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1.
J Am Chem Soc ; 143(36): 14482-14486, 2021 09 15.
Article in English | MEDLINE | ID: mdl-34469129

ABSTRACT

The hypothesis that life on Earth may have started with a heterogeneous nucleic acid genetic system including both RNA and DNA has attracted broad interest. The recent finding that two RNA subunits (cytidine, C, and uridine, U) and two DNA subunits (deoxyadenosine, dA, and deoxyinosine, dI) can be coproduced in the same reaction network, compatible with a consistent geological scenario, supports this theory. However, a prebiotically plausible synthesis of the missing units (purine ribonucleosides and pyrimidine deoxyribonucleosides) in a unified reaction network remains elusive. Herein, we disclose a strictly stereoselective and furanosyl-selective synthesis of purine ribonucleosides (adenosine, A, and inosine, I) and purine deoxynucleosides (dA and dI), alongside one another, via a key photochemical reaction of thioanhydroadenosine with sulfite in alkaline solution (pH 8-10). Mechanistic studies suggest an unexpected recombination of sulfite and nucleoside alkyl radicals underpins the formation of the ribo C2'-O bond. The coproduction of A, I, dA, and dI from a common intermediate, and under conditions likely to have prevailed in at least some primordial locales, is suggestive of the potential coexistence of RNA and DNA building blocks at the dawn of life.


Subject(s)
Deoxyribonucleosides/chemical synthesis , Purine Nucleosides/chemical synthesis , Ribonucleosides/chemical synthesis , Adenosine/analogs & derivatives , Adenosine/radiation effects , Evolution, Chemical , Hydrogen-Ion Concentration , Models, Chemical , Sulfites/chemistry , Sulfites/radiation effects , Ultraviolet Rays
2.
Acta Crystallogr D Biol Crystallogr ; 71(Pt 5): 1087-94, 2015 May.
Article in English | MEDLINE | ID: mdl-25945574

ABSTRACT

Octahaem cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens catalyzes the reduction of nitrite to ammonium and of sulfite to sulfide. The reducing properties of X-ray radiation and the high quality of the enzyme crystals allow study of the catalytic reaction of cytochrome c nitrite reductase directly in a crystal of the enzyme, with the reaction being induced by X-rays. Series of diffraction data sets with increasing absorbed dose were collected from crystals of the free form of the enzyme and its complexes with nitrite and sulfite. The corresponding structures revealed gradual changes associated with the reduction of the catalytic haems by X-rays. In the case of the nitrite complex the conversion of the nitrite ions bound in the active sites to NO species was observed, which is the beginning of the catalytic reaction. For the free form, an increase in the distance between the oxygen ligand bound to the catalytic haem and the iron ion of the haem took place. In the case of the sulfite complex no enzymatic reaction was detected, but there were changes in the arrangement of the active-site water molecules that were presumably associated with a change in the protonation state of the sulfite ions.


Subject(s)
Cytochromes a1/chemistry , Cytochromes a1/metabolism , Cytochromes c1/chemistry , Cytochromes c1/metabolism , Ectothiorhodospiraceae/enzymology , Heme/chemistry , Nitrate Reductases/chemistry , Nitrate Reductases/metabolism , Nitrites/metabolism , Protein Conformation/radiation effects , Sulfites/metabolism , Catalytic Domain , Crystallography, X-Ray , Cytochromes a1/radiation effects , Cytochromes c1/radiation effects , Ectothiorhodospiraceae/radiation effects , Models, Molecular , Nitrate Reductases/radiation effects , Nitrites/chemistry , Nitrites/radiation effects , Protein Binding , Radiation Effects , Substrate Specificity , Sulfites/chemistry , Sulfites/radiation effects , X-Rays
3.
PDA J Pharm Sci Technol ; 52(3): 129-33, 1998.
Article in English | MEDLINE | ID: mdl-9691676

ABSTRACT

On exposure to UV light at 254 nm in a borosilicate glass actinometer, vitamin k1 decomposed rapidly with a degradation rate constant of 7.63 day-1. Under UV irradiation, DL methionine and sodium metabisulphite were found to have some photostabilizing effect for vitamin k1 formulations. The degradation rates were reduced by 43.4% and 60.4% in the presence of 0.1% w/v of DL methionine and 0.2% w/v of sodium metabisuphite, respectively. When vitamin k1 formulations were stored at room temperature in clear glass bottles and exposed to the weaker light source of both room fluorescent light and natural daylight, vitamin k1 decomposed at a much slower degradation rate constant of 0.31 day-1. Despite the slower degradation rate, DL methionine and sodium metabisuphite failed to protect vitamin k1 from degradation on exposure to this weaker light source. When vitamin k1 was stored in white plastic bottles under the same testing conditions, the photo-protective effect of these photostabilizers reappeared. The protection provided extended the shelf-life from one day to 2.5 days. When amber glass bottles replaced white plastic bottles as storage containers, vitamin k1 was found stable on an open bench for at least 30 days. Such stability was also observed when vitamin k1 was stored in a refrigerator in either white plastic bottles or amber bottles. Findings in this study showed that package and storage conditions that shield the products from light are still the most efficient ways to maintain the photostability of vitamin k1. However, photostabilizers such as DL methionine and sodium metabisulphite may provide additional protection to vitamin k1 when it is stored in less effective light-resistant containers.


Subject(s)
Methionine/chemistry , Sulfites/chemistry , Vitamin K 1/chemistry , Drug Stability , Methionine/radiation effects , Pharmaceutic Aids , Photochemistry , Spectrophotometry, Ultraviolet , Sulfites/radiation effects
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