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1.
Elife ; 112022 01 19.
Article in English | MEDLINE | ID: mdl-35044299

ABSTRACT

Serum response factor (SRF) is an essential transcription factor that influences many cellular processes including cell proliferation, migration, and differentiation. SRF directly regulates and is required for immediate early gene (IEG) and actin cytoskeleton-related gene expression. SRF coordinates these competing transcription programs through discrete sets of cofactors, the ternary complex factors (TCFs) and myocardin-related transcription factors (MRTFs). The relative contribution of these two programs to in vivo SRF activity and mutant phenotypes is not fully understood. To study how SRF utilizes its cofactors during development, we generated a knock-in SrfaI allele in mice harboring point mutations that disrupt SRF-MRTF-DNA complex formation but leave SRF-TCF activity unaffected. Homozygous SrfaI/aI mutants die at E10.5 with notable cardiovascular phenotypes, and neural crest conditional mutants succumb at birth to defects of the cardiac outflow tract but display none of the craniofacial phenotypes associated with complete loss of SRF in that lineage. Our studies further support an important role for MRTF mediating SRF function in cardiac neural crest and suggest new mechanisms by which SRF regulates transcription during development.


Subject(s)
Neural Crest/embryology , Serum Response Factor/genetics , Ternary Complex Factors/genetics , Transcription Factors/genetics , Animals , Mice , Serum Response Factor/metabolism , Ternary Complex Factors/metabolism , Transcription Factors/metabolism
2.
FEBS J ; 288(10): 3120-3134, 2021 05.
Article in English | MEDLINE | ID: mdl-32885587

ABSTRACT

Serum response factor (SRF), a member of the Mcm1, Agamous, Deficiens, and SRF (MADS) box transcription factor, is widely expressed in all cell types and plays a crucial role in the physiological function and development of diseases. SRF regulates its downstream genes by binding to their CArG DNA box by interacting with various cofactors. However, the underlying mechanisms are not fully understood, therefore attracting increasing research attention due to the importance of this topic. This review's objective is to discuss the new progress in the studies of the molecular mechanisms involved in the activation of SRF and its impacts in physiological and pathological conditions. Notably, we summarized the recent studies on the interaction of SRF with its two main types of cofactors belonging to the myocardin families of transcription factors and the members of the ternary complex factors. The knowledge of these mechanisms will create new opportunities for understanding the dynamics of many traits and disease pathogenesis especially, cardiovascular diseases and cancer that could serve as targets for pharmacological control and treatment of these diseases.


Subject(s)
Cardiovascular Diseases/genetics , Neoplasms/genetics , Nuclear Proteins/genetics , Serum Response Factor/genetics , Ternary Complex Factors/genetics , Trans-Activators/genetics , Transcription, Genetic , Actin Cytoskeleton/metabolism , Actin Cytoskeleton/pathology , Animals , Apoptosis/genetics , Cardiovascular Diseases/metabolism , Cardiovascular Diseases/pathology , Cell Proliferation , DNA/genetics , DNA/metabolism , Gene Expression Regulation , Humans , Mice , Neoplasms/metabolism , Neoplasms/pathology , Nuclear Proteins/metabolism , Protein Binding , Protein Isoforms/genetics , Protein Isoforms/metabolism , Serum Response Factor/metabolism , Signal Transduction , Stress, Physiological , Ternary Complex Factors/metabolism , Trans-Activators/metabolism
3.
J Struct Biol ; 209(1): 107411, 2020 01 01.
Article in English | MEDLINE | ID: mdl-31689503

ABSTRACT

Dystrophin is a large intracellular protein that prevents sarcolemmal ruptures by providing a mechanical link between the intracellular actin cytoskeleton and the transmembrane dystroglycan complex. Dystrophin deficiency leads to the severe muscle wasting disease Duchenne Muscular Dystrophy and the milder allelic variant, Becker Muscular Dystrophy (DMD and BMD). Previous work has shown that concomitant interaction of the actin binding domain 2 (ABD2) comprising spectrin like repeats 11 to 15 (R11-15) of the central domain of dystrophin, with both actin and membrane lipids, can greatly increase membrane stiffness. Based on a combination of SAXS and SANS measurements, mass spectrometry analysis of cross-linked complexes and interactive low-resolution simulations, we explored in vitro the molecular properties of dystrophin that allow the formation of ABD2-F-actin and ABD2-membrane model complexes. In dystrophin we identified two subdomains interacting with F-actin, one located in R11 and a neighbouring region in R12 and another one in R15, while a single lipid binding domain was identified at the C-terminal end of R12. Relative orientations of the dystrophin central domain with F-actin and a membrane model were obtained from docking simulation under experimental constraints. SAXS-based models were then built for an extended central subdomain from R4 to R19, including ABD2. Overall results are compatible with a potential F-actin/dystrophin/membrane lipids ternary complex. Our description of this selected part of the dystrophin associated complex bridging muscle cell membrane and cytoskeleton opens the way to a better understanding of how cell muscle scaffolding is maintained through this essential protein.


Subject(s)
Dystrophin/ultrastructure , Muscular Dystrophy, Duchenne/genetics , Sarcolemma/genetics , Actin Cytoskeleton/genetics , Actin Cytoskeleton/ultrastructure , Actins/genetics , Actins/ultrastructure , Dystrophin/genetics , Humans , Lipids/chemistry , Lipids/genetics , Muscular Dystrophy, Duchenne/pathology , Protein Binding , Sarcolemma/ultrastructure , Scattering, Small Angle , Ternary Complex Factors/genetics , Ternary Complex Factors/ultrastructure , X-Ray Diffraction
4.
Nucleic Acids Res ; 47(5): 2574-2593, 2019 03 18.
Article in English | MEDLINE | ID: mdl-30576497

ABSTRACT

In translation initiation, a 43S preinitiation complex (PIC) containing eIF1 and a ternary complex (TC) of GTP-bound eIF2 and Met-RNAi scans the mRNA for the start codon. AUG recognition triggers eIF1 release and rearrangement from an open PIC conformation to a closed state with more tightly-bound Met-tRNAi (PIN state). Cryo-EM models reveal eIF2ß contacts with eIF1 and Met-tRNAi exclusive to the open complex that should destabilize the closed state. eIF2ß or eIF1 substitutions disrupting these contacts increase initiation at UUG codons, and compound substitutions also derepress translation of GCN4, indicating slower TC recruitment. The latter substitutions slow TC loading while stabilizing TC binding at UUG codons in reconstituted PICs, indicating a destabilized open complex and shift to the closed/PIN state. An eIF1 substitution that should strengthen the eIF2ß:eIF1 interface has the opposite genetic and biochemical phenotypes. eIF2ß is also predicted to restrict Met-tRNAi movement into the closed/PIN state, and substitutions that should diminish this clash increase UUG initiation in vivo and stabilize Met-tRNAi binding at UUG codons in vitro with little effect on TC loading. Thus, eIF2ß anchors eIF1 and TC to the open complex, enhancing PIC assembly and scanning, while impeding rearrangement to the closed conformation at non-AUG codons.


Subject(s)
Basic-Leucine Zipper Transcription Factors/genetics , Eukaryotic Initiation Factor-2B/genetics , Peptide Chain Initiation, Translational , Protein Biosynthesis , Saccharomyces cerevisiae Proteins/genetics , Codon, Initiator/genetics , Cryoelectron Microscopy , Eukaryotic Initiation Factor-1 , RNA, Transfer, Met , Saccharomyces cerevisiae/genetics , Ternary Complex Factors/genetics
5.
Am J Physiol Cell Physiol ; 315(6): C873-C884, 2018 12 01.
Article in English | MEDLINE | ID: mdl-30332284

ABSTRACT

The endothelin type B receptor (ETB or EDNRB) is highly plastic and is upregulated in smooth muscle cells (SMCs) by arterial injury and following organ culture in vitro. We hypothesized that this transcriptional plasticity may arise, in part, because EDNRB is controlled by a balance of transcriptional inputs from myocardin-related transcription factors (MRTFs) and ternary complex factors (TCFs). We found significant positive correlations between the TCFs ELK3 and FLI1 versus EDNRB in human arteries. The MRTF MKL2 also correlated with EDNRB. Overexpression of ELK3, FLI1, and MKL2 in human coronary artery SMCs promoted expression of EDNRB, and the effect of MKL2 was antagonized by myocardin (MYOCD), which also correlated negatively with EDNRB at the tissue level. Silencing of MKL2 reduced basal EDNRB expression, but depolymerization of actin using latrunculin B (LatB) or overexpression of constitutively active cofilin, as well as treatment with the Rho-associated kinase (ROCK) inhibitor Y27632, increased EDNRB in a MEK/ERK-dependent fashion. Transcript-specific primers indicated that the second EDNRB transcript (EDNRB_2) was targeted, but this promoter was largely unresponsive to LatB and was inhibited rather than stimulated by MKL2 and FLI1, suggesting distant control elements or an indirect effect. LatB also reduced expression of endothelin-1, but supplementation experiments argued that this was not the cause of EDNRB induction. EDNRB finally changed in parallel with ELK3 and FLI1 in rat and human carotid artery lesions. These studies implicate the actin cytoskeleton and ELK3, FLI1, and MKL2 in the transcriptional control of EDNRB and increase our understanding of the plasticity of this receptor.


Subject(s)
Actin Cytoskeleton/genetics , Carotid Artery Injuries/genetics , Proto-Oncogene Proteins/genetics , Receptor, Endothelin B/genetics , Transcription Factors/genetics , Actin Cytoskeleton/metabolism , Actin Depolymerizing Factors/pharmacology , Amides/pharmacology , Animals , Bridged Bicyclo Compounds, Heterocyclic/pharmacology , Carotid Artery Injuries/metabolism , Carotid Artery Injuries/pathology , Endothelin-1/genetics , Gene Expression Regulation, Developmental/drug effects , Humans , Myocytes, Smooth Muscle/metabolism , Nuclear Proteins/genetics , Proto-Oncogene Protein c-fli-1/genetics , Proto-Oncogene Proteins c-ets , Pyridines/pharmacology , Rats , Ternary Complex Factors/genetics , Thiazolidines/pharmacology , Trans-Activators/genetics , rho-Associated Kinases/antagonists & inhibitors , rho-Associated Kinases/genetics
6.
Sci Rep ; 8(1): 6707, 2018 04 30.
Article in English | MEDLINE | ID: mdl-29712996

ABSTRACT

Yeast p20 is a small, acidic protein that binds eIF4E, the cap-binding protein. It has been proposed to affect mRNA translation and degradation, however p20's function as an eIF4E-binding protein (4E-BP) and its physiological significance has not been clearly established. In this paper we present data demonstrating that p20 is capable of binding directly to mRNA due to electrostatic interaction of a stretch of arginine and histidine residues in the protein with negatively charged phosphates in the mRNA backbone. This interaction contributes to formation of a ternary eIF4E/p20/capped mRNA complex that is more stable than complexes composed of capped mRNA bound to eIF4E in the absence of p20. eIF4E/p20 complex was found to have a more pronounced stimulatory effect on capped mRNA translation than purified eIF4E alone. Addition of peptides containing the eIF4E-binding domains present in p20 (motif  YTIDELF), in eIF4G (motif  YGPTFLL) or Eap1 (motif  YSMNELY) completely inhibited eIF4E-dependent capped mRNA translation (in vitro), but had a greatly reduced inhibitory effect when eIF4E/p20 complex was present. We propose that the eIF4E/p20/mRNA complex serves as a stable depository of mRNAs existing in a dynamic equilibrium with other complexes such as eIF4E/eIF4G (required for translation) and eIF4E/Eap1 (required for mRNA degradation).


Subject(s)
Eukaryotic Initiation Factor-4E/chemistry , Nuclear Cap-Binding Protein Complex/chemistry , RNA, Messenger/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Ternary Complex Factors/chemistry , Amino Acid Sequence/genetics , Arginine/chemistry , Binding Sites , Eukaryotic Initiation Factor-4E/genetics , Histidine/chemistry , Nuclear Cap-Binding Protein Complex/genetics , Nucleotide Motifs/genetics , Protein Binding/genetics , RNA Stability/genetics , RNA, Messenger/genetics , Saccharomyces cerevisiae/chemistry , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae Proteins/genetics , Ternary Complex Factors/genetics
7.
Int J Biol Macromol ; 107(Pt A): 1113-1121, 2018 Feb.
Article in English | MEDLINE | ID: mdl-28964842

ABSTRACT

In this study, we newly developed the ternary complexes consisting of lactosylated dendrimer (generation 3)/α-cyclodextrin conjugate (Lac-α-CDE), siRNA and the anionic polysaccharide sacrans, and evaluated their utility as siRNA transfer carriers. Three kinds of the low-molecular-weight sacrans, i.e. sacran (100) (Mw 44,889Da), sacran (1000) (Mw 943,692Da) and sacran (10,000) (Mw 1,488,281Da) were used. Lac-α-CDE/siRNA/sacran ternary complexes were prepared by adding the low-molecular-weight sacrans to the Lac-α-CDE/siRNA binary complex solution. Cellular uptake of the ternary complex with sacran (100) was higher than that of the binary complex or the other ternary complexes with sacran (1000) and sacran (10,000) in HepG2 cells. Additionally, the ternary complex possessed high serum resistance and endosomal escaping ability in HepG2 cells. High liver levels of siRNA and Lac-α-CDE were observed after the intravenous administration of the ternary complex rather than that of the binary complex. Moreover, intravenous administration of the ternary complex (siRNA 5mg/kg) induced the significant RNAi effect in the liver of mice with negligible change of blood chemistry values. Therefore, a ternary complexation of the Lac-α-CDE/siRNA binary complex with sacran is useful as a hepatocyte-specific siRNA delivery system.


Subject(s)
Cyclodextrins/chemistry , Dendrimers/chemistry , Polysaccharides/chemistry , RNA, Small Interfering/chemistry , Animals , Cyclodextrins/genetics , Dendrimers/pharmacology , Drug Carriers , Gene Transfer Techniques , Hep G2 Cells , Hepatocytes/metabolism , Humans , Lactose/chemistry , Mice , Polysaccharides/genetics , Polysaccharides/pharmacology , RNA, Small Interfering/genetics , Ternary Complex Factors/chemistry , Ternary Complex Factors/genetics
8.
Mol Cell ; 64(6): 1048-1061, 2016 12 15.
Article in English | MEDLINE | ID: mdl-27867007

ABSTRACT

The ERK-regulated ternary complex factors (TCFs) act with the transcription factor serum response factor (SRF) to activate mitogen-induced transcription. However, the extent of their involvement in the immediate-early transcriptional response, and their wider functional significance, has remained unclear. We show that, in MEFs, TCF inactivation significantly inhibits over 60% of TPA-inducible gene transcription and impairs cell proliferation. Using integrated SRF ChIP-seq and Hi-C data, we identified over 700 TCF-dependent SRF direct target genes involved in signaling, transcription, and proliferation. These also include a significant number of cytoskeletal gene targets for the Rho-regulated myocardin-related transcription factor (MRTF) SRF cofactor family. The TCFs act as general antagonists of MRTF-dependent SRF target gene expression, competing directly with the MRTFs for access to SRF. As a result, TCF-deficient MEFs exhibit hypercontractile and pro-invasive behavior. Thus, competition between TCFs and MRTFs for SRF determines the balance between antagonistic proliferative and contractile programs of gene expression.


Subject(s)
Fibroblasts/metabolism , Gene Expression Regulation , Serum Response Factor/genetics , Ternary Complex Factors/genetics , Animals , Base Sequence , Cell Line , Cell Proliferation/drug effects , Extracellular Signal-Regulated MAP Kinases/genetics , Extracellular Signal-Regulated MAP Kinases/metabolism , Fibroblasts/cytology , Fibroblasts/drug effects , Gene Expression Profiling , Genetic Complementation Test , Humans , Mice , Serum Response Factor/metabolism , Signal Transduction , Ternary Complex Factors/antagonists & inhibitors , Ternary Complex Factors/metabolism , Tetradecanoylphorbol Acetate/pharmacology , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription, Genetic , ets-Domain Protein Elk-1/genetics , ets-Domain Protein Elk-1/metabolism
9.
Proc Natl Acad Sci U S A ; 113(48): 13744-13749, 2016 11 29.
Article in English | MEDLINE | ID: mdl-27837019

ABSTRACT

Aminoacyl-tRNAs (aa-tRNAs) are selected by the messenger RNA programmed ribosome in ternary complex with elongation factor Tu (EF-Tu) and GTP and then, again, in a proofreading step after GTP hydrolysis on EF-Tu. We use tRNA mutants with different affinities for EF-Tu to demonstrate that proofreading of aa-tRNAs occurs in two consecutive steps. First, aa-tRNAs in ternary complex with EF-Tu·GDP are selected in a step where the accuracy increases linearly with increasing aa-tRNA affinity to EF-Tu. Then, following dissociation of EF-Tu·GDP from the ribosome, the accuracy is further increased in a second and apparently EF-Tu-independent step. Our findings identify the molecular basis of proofreading in bacteria, highlight the pivotal role of EF-Tu for fast and accurate protein synthesis, and illustrate the importance of multistep substrate selection in intracellular processing of genetic information.


Subject(s)
Peptide Elongation Factor Tu/genetics , Protein Biosynthesis , RNA, Transfer/genetics , Ribosomes/genetics , Amino Acyl-tRNA Synthetases/genetics , Genetic Code/genetics , Guanosine Diphosphate/metabolism , Mutation , Nucleic Acid Conformation , RNA, Messenger/genetics , Ternary Complex Factors/genetics
10.
Amino Acids ; 48(12): 2831-2842, 2016 12.
Article in English | MEDLINE | ID: mdl-27613409

ABSTRACT

Amino-acid deprivation is sensed by the eIF2α kinase GCN2. Under conditions of essential amino-acid limitation, GCN2 phosphorylates eIF2α, inhibiting the formation of a new ternary complex and hence mRNA translation initiation. While decreasing global mRNA translation, eIF2α phosphorylation also increases the translation of the integrated stress response (ISR) transcription factor ATF4, which increases the expression of many stress response genes that contain a C/EBP-ATF response element (CARE), including Atf4, 4Ebp1, Asns, and Chop. Using wild-type as well as Gcn2 knockout and unphosphorylatable eIF2α mutant MEFs, we characterized a novel GCN2/eIF2α phosphorylation-independent, but ATF4-dependent, pathway that upregulates the expression of CARE-containing genes in MEFs lacking GCN2 or phosphorylatable eIF2α when these cells are exposed to methionine-deficient, and to a lesser extent arginine- or histidine-deficient, medium. Thus, we demonstrate a GCN2/eIF2α phosphorylation-independent pathway that converges with the GCN2/eIF2α kinase-dependent pathway at the level of ATF4 and similarly results in the upregulation of CARE-containing genes. We hypothesize that the essential role of methionine-charged initiator tRNA in forming ternary complex is responsible for the robust ability of methionine deficiency to induce ATF4 and the ISR even in the absence of GCN2 or eIF2α kinase activity.


Subject(s)
Activating Transcription Factor 4/genetics , Glial Cell Line-Derived Neurotrophic Factor/genetics , Methionine/metabolism , Protein Biosynthesis , Protein Serine-Threonine Kinases/genetics , Activating Transcription Factor 4/chemistry , Activating Transcription Factor 4/metabolism , Amino Acids/metabolism , Eukaryotic Initiation Factor-2/genetics , Eukaryotic Initiation Factor-2/metabolism , Fibroblasts , Glial Cell Line-Derived Neurotrophic Factor/metabolism , Humans , Methionine/deficiency , Methionine/genetics , Phosphorylation , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/metabolism , RNA, Messenger/biosynthesis , Signal Transduction , Ternary Complex Factors/chemistry , Ternary Complex Factors/genetics , Transcriptional Activation/genetics
11.
Hum Mol Genet ; 25(11): 2234-2244, 2016 06 01.
Article in English | MEDLINE | ID: mdl-27005423

ABSTRACT

Classic galactosemia is a potentially lethal disease caused by the dysfunction of galactose 1-phosphate uridylyltransferase (GALT). Over 300 disease-associated GALT mutations have been reported, with the majority being missense changes, although a better understanding of their underlying molecular effects has been hindered by the lack of structural information for the human enzyme. Here, we present the 1.9 Å resolution crystal structure of human GALT (hGALT) ternary complex, revealing a homodimer arrangement that contains a covalent uridylylated intermediate and glucose-1-phosphate in the active site, as well as a structural zinc-binding site, per monomer. hGALT reveals significant structural differences from bacterial GALT homologues in metal ligation and dimer interactions, and therefore is a zbetter model for understanding the molecular consequences of disease mutations. Both uridylylation and zinc binding influence the stability and aggregation tendency of hGALT. This has implications for disease-associated variants where p.Gln188Arg, the most commonly detected, increases the rate of aggregation in the absence of zinc likely due to its reduced ability to form the uridylylated intermediate. As such our structure serves as a template in the future design of pharmacological chaperone therapies and opens new concepts about the roles of metal binding and activity in protein misfolding by disease-associated mutants.


Subject(s)
Galactosemias/genetics , Structure-Activity Relationship , Ternary Complex Factors/chemistry , UTP-Hexose-1-Phosphate Uridylyltransferase/genetics , Binding Sites/genetics , Catalytic Domain/genetics , Crystallography, X-Ray , Galactose/chemistry , Galactose/metabolism , Galactosemias/metabolism , Galactosemias/pathology , Humans , Kinetics , Models, Molecular , Mutagenesis, Site-Directed , Mutation , Protein Conformation , Ternary Complex Factors/genetics , UTP-Hexose-1-Phosphate Uridylyltransferase/chemistry
12.
Mol Pharmacol ; 87(4): 617-28, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25576487

ABSTRACT

The steroid pregnenolone sulfate activates the transcription factor activator protein-1 (AP-1) via stimulation of transient receptor potential melastatin-3 (TRPM3) channels. Here, we show that the signaling pathway requires an influx of Ca(2+) ions into the cells and a rise in the intracellular Ca(2+) levels. The upregulation of AP-1 was attenuated in cells that overexpressed mitogen activated protein kinase phosphatase-1, indicating that Ca(2+) ions prolong the signaling cascade via activation of mitogen activated protein kinases. On the transcriptional level, expression of a dominant-negative mutant of the basic region leucine zipper protein c-Jun, a major constituent of the AP-1 transcription factor complex, or expression of a c-Jun-specific short hairpin RNA attenuated pregnenolone sulfate-induced AP-1 activation. In addition, stimulation of TRPM3 channels increased the transcriptional activation potential of the basic region leucine zipper protein ATF2. Inhibition of ATF2 target gene expression via expression of a dominant-negative mutant of ATF2 or expression of an ATF2-specific short hairpin RNA interfered with TRPM3-mediated stimulation of AP-1. Moreover, we show that a dominant-negative mutant of the ternary complex factor (TCF) Elk-1 attenuated the upregulation of AP-1 following stimulation of TRPM3 channels. Thus, c-Jun, ATF2, and TCFs are required to connect the intracellular signaling cascade elicited by activation of TRPM3 channels with enhanced transcription of AP-1-regulated genes. We conclude that pregnenolone sulfate-induced TRPM3 channel activation changes the gene expression pattern of the cells by activating transcription of c-Jun-, ATF2-, and TCF-controlled genes.


Subject(s)
Activating Transcription Factor 2/metabolism , Calcium/metabolism , Proto-Oncogene Proteins c-jun/metabolism , TRPM Cation Channels/metabolism , Ternary Complex Factors/metabolism , Transcription Factor AP-1/metabolism , Activating Transcription Factor 2/genetics , Cations , HEK293 Cells , Humans , Pregnenolone/pharmacology , Proto-Oncogene Proteins c-jun/genetics , TRPM Cation Channels/genetics , Ternary Complex Factors/genetics , Transcription, Genetic , Up-Regulation , ets-Domain Protein Elk-1/genetics , ets-Domain Protein Elk-1/metabolism
13.
Genes Cells ; 17(8): 688-97, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22734669

ABSTRACT

Dock3, a new member of the guanine nucleotide exchange factor family, causes cellular morphological changes by activating the small GTPase Rac1. Overexpression of Dock3 in neural cells promotes neurite outgrowth through the formation of a protein complex with Fyn and WAVE downstream of brain-derived neurotrophic factor (BDNF) signaling. Here, we report a novel Dock3-mediated BDNF pathway for neurite outgrowth. We show that Dock3 forms a complex with Elmo and activated RhoG downstream of BDNF-TrkB signaling and induces neurite outgrowth via Rac1 activation in PC12 cells. We also show the importance of Dock3 phosphorylation in Rac1 activation and show two key events that are necessary for efficient Dock3 phosphorylation: membrane recruitment of Dock3 and interaction of Dock3 with Elmo. These results suggest that Dock3 plays important roles downstream of BDNF signaling in the central nervous system where it stimulates actin polymerization by multiple pathways.


Subject(s)
Carrier Proteins/metabolism , Nerve Tissue Proteins/metabolism , Neurites/metabolism , Receptor, trkB/metabolism , Signal Transduction , Ternary Complex Factors/metabolism , Adaptor Proteins, Signal Transducing/genetics , Adaptor Proteins, Signal Transducing/metabolism , Animals , Brain-Derived Neurotrophic Factor/pharmacology , COS Cells , Carrier Proteins/genetics , Cell Membrane/genetics , Cell Membrane/metabolism , Chlorocebus aethiops , Enzyme Activation , GTP Phosphohydrolases/genetics , GTP Phosphohydrolases/metabolism , Guanine Nucleotide Exchange Factors , Mice , Mice, Inbred C57BL , Nerve Tissue Proteins/genetics , Neurites/drug effects , Neurites/physiology , Neuropeptides/genetics , Neuropeptides/metabolism , PC12 Cells , Phosphorylation , Protein Interaction Mapping , Protein Transport , Rats , Receptor, trkB/genetics , Ternary Complex Factors/genetics , Transfection , rac GTP-Binding Proteins/genetics , rac GTP-Binding Proteins/metabolism , rac1 GTP-Binding Protein , rho GTP-Binding Proteins
14.
Trends Biochem Sci ; 37(6): 220-9, 2012 Jun.
Article in English | MEDLINE | ID: mdl-22410197

ABSTRACT

Centromeres direct faithful chromosome inheritance at cell division but are not defined by a conserved DNA sequence. Instead, a specialized form of chromatin containing the histone H3 variant, CENP-A, epigenetically specifies centromere location. We discuss current models where CENP-A serves as the marker for the centromere during the entire cell cycle in addition to generating the foundational chromatin for the kinetochore in mitosis. Recent elegant experiments have indicated that engineered arrays of CENP-A-containing nucleosomes are sufficient to serve as the site of kinetochore formation and for seeding centromeric chromatin that self-propagates through cell generations. Finally, recent structural and dynamic studies of CENP-A-containing histone complexes - before and after assembly into nucleosomes - provide models to explain underlying molecular mechanisms at the centromere.


Subject(s)
Centromere/chemistry , Chromatin Assembly and Disassembly , Chromatin/chemistry , DNA-Binding Proteins/chemistry , Drosophila Proteins/chemistry , Histones/chemistry , Amino Acid Sequence , Animals , Centromere/genetics , Centromere Protein A , Chromatin/genetics , DNA-Binding Proteins/genetics , Drosophila/chemistry , Drosophila/genetics , Drosophila Proteins/genetics , Epigenesis, Genetic , Histones/genetics , Humans , Mitosis , Molecular Sequence Data , Protein Interaction Mapping , Ternary Complex Factors/chemistry , Ternary Complex Factors/genetics
15.
J Pharmacol Exp Ther ; 342(1): 41-52, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22454534

ABSTRACT

Morphine-induced signaling via opioid receptors (ORs) in dorsal root ganglia (DRG) neurons, the spinal cord, and various brain regions has been shown to modulate gene activity. Hitherto, little attention has been paid to extracellular signal-regulated kinases-1/2 (ERK-1/2)-mediated activation of the serum response factor (SRF) and ternary complex factors (TCFs) such as the E twenty six-like transcription factor-1 (ELK-1) in this context. Using TCF/SRF-dependent reporter gene constructs, a specific ERK-1/2 inhibitor and a dominant-negative ELK-1 mutant, we show herein that morphine activates ELK-1 via ERK-1/2 in DRG-derived F11 cells endogenously expressing µ and δ ORs. Previous studies with glioma cell lines such as NG108-15 cells attributed morphine-induced gene expression to the activation of the cAMP-responsive element binding protein (CREB). Thus, we also analyzed morphine-dependent activation of CREB in F11 and NG108-15 cells. In contrast to the CREB stimulation found in NG108-15 cells, we observed an inhibitory effect of morphine in F11 cells, indicating cell type-specific regulation of CREB by morphine. To obtain data about putative target genes of morphine-induced ELK-1/SRF activation, we analyzed mRNA levels of 15 ELK-1/SRF-dependent genes in cultured rat DRG neurons and F11 cells. We identified the early growth response protein-4 (EGR-4) as the strongest up-regulated gene in both cell types and observed ELK-1 activity-dependent activation of an EGR-4-driven reporter in F11 cells. Overall, we reveal an important role of ELK-1 for morphine-dependent gene induction in DRG-derived cells and propose that ELK-1 and EGR-4 contribute to the effects of morphine on neuronal plasticity.


Subject(s)
Ganglia, Spinal/drug effects , MAP Kinase Signaling System/drug effects , Morphine/pharmacology , Neurons/drug effects , Serum Response Factor/metabolism , ets-Domain Protein Elk-1/metabolism , Animals , Cells, Cultured , Cyclic AMP Response Element-Binding Protein/genetics , Cyclic AMP Response Element-Binding Protein/metabolism , Early Growth Response Transcription Factors/genetics , Early Growth Response Transcription Factors/metabolism , Ganglia, Spinal/metabolism , Mice , Neurons/metabolism , RNA, Messenger/genetics , Rats , Rats, Sprague-Dawley , Receptors, Opioid, delta/genetics , Receptors, Opioid, delta/metabolism , Receptors, Opioid, mu/genetics , Receptors, Opioid, mu/metabolism , Serum Response Factor/genetics , Signal Transduction/drug effects , Ternary Complex Factors/genetics , Ternary Complex Factors/metabolism , Transcription, Genetic/drug effects , Transcriptional Activation/drug effects , Up-Regulation/drug effects , ets-Domain Protein Elk-1/genetics
16.
Cell Cycle ; 11(6): 1217-34, 2012 Mar 15.
Article in English | MEDLINE | ID: mdl-22391203

ABSTRACT

HIV-1 Tat triggers intrinsic and extrinsic apoptosis pathways in both infected and uninfected cells and plays an important role in the pathogenesis of AIDS. Knocking down Tip60, an interactive protein of Tat, leads to the impairment of cell cycle progression, indicating a key role of Tip60 in cell cycle control. We found that Tip60 interacts with Plk1 through its ZnFMYST domain, and that this interaction is enhanced in the G 2/M phase. In addition, cyclin B1 was confirmed to interact with the ZnF domain of Tip60. Immunofluorescence imaging showed that Tip60 co-localizes with both Plk1 and cyclin B1 at the centrosome during the mitotic phase and to the mid-body during cytokinesis. Further experiments revealed that Tip60 forms a ternary complex with Plk1 and cyclin B1 and acetylates Plk1 but not cyclin B1. HIV-1 Tat likely forms a quaternary complex with Tip60, cyclin B1 and Plk1. Fluorescent microscopy showed that Tat causes an unscheduled nuclear translocation of both cyclin B1 and Plk1, causing their co-localization with Tip60 in the nucleus. Tat, Tip60, cyclin B1 and Plk1 interactions provide new a mechanistic explanation for Tat-mediated cell cycle dysregulation and apoptosis.


Subject(s)
Cell Cycle Proteins/metabolism , Cell Cycle , Cyclin B1/metabolism , Histone Acetyltransferases/metabolism , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/metabolism , tat Gene Products, Human Immunodeficiency Virus/metabolism , Acetylation , Cell Cycle Proteins/genetics , Cell Nucleus/genetics , Cell Nucleus/metabolism , Centrosome/metabolism , Cyclin B1/genetics , Fluorescent Antibody Technique , Genetic Vectors/genetics , Genetic Vectors/metabolism , HEK293 Cells , HIV-1/metabolism , Histone Acetyltransferases/genetics , Humans , Lysine Acetyltransferase 5 , Protein Binding , Protein Interaction Domains and Motifs , Protein Interaction Mapping , Protein Serine-Threonine Kinases/genetics , Protein Transport , Proto-Oncogene Proteins/genetics , Ternary Complex Factors/genetics , Ternary Complex Factors/metabolism , Time-Lapse Imaging , Transfection , Polo-Like Kinase 1
17.
Mol Cell Neurosci ; 44(2): 165-77, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20304071

ABSTRACT

ELK transcription factors are known to be expressed in a number of regions in the nervous system. We show by RT-PCR that the previously described Elk1, Elk3/Elk3b/Elk3c and Elk4 mRNAs are expressed in adult dorsal root ganglia (DRG), together with the novel alternatively spliced isoforms Elk1b, Elk3d and Elk4c/Elk4d/Elk4e. These isoforms are also expressed in brain, heart, kidney and testis. In contrast to Elk3 protein, the novel Elk3d isoform is cytoplasmic, fails to bind ETS binding sites and yet can activate transcription by an indirect mechanism. The Elk3 and Elk4 genes are overlapped by co-expressed Pctk2 (Cdk17) and Mfsd4 genes, respectively, with the potential formation of Elk3/Pctaire2 and Elk4/Mfsd4 sense-antisense mRNA heteroduplexes. After peripheral nerve injury the Elk3 mRNA isoforms are each upregulated approximately 2.3-fold in DRG (P<0.005), whereas the natural antisense Pctaire2 isoforms show only a small increase (21%, P<0.01) and Elk1 and Elk4 mRNAs are unchanged.


Subject(s)
Alternative Splicing/genetics , Ganglia, Spinal/metabolism , RNA, Antisense/genetics , RNA, Messenger/genetics , Sensory Receptor Cells/metabolism , Ternary Complex Factors/metabolism , Animals , Axotomy/adverse effects , Cyclin-Dependent Kinases/genetics , Cyclin-Dependent Kinases/metabolism , Disease Models, Animal , Ganglia, Spinal/cytology , Gene Expression Regulation/genetics , Mice , Mice, Transgenic , Molecular Sequence Data , Nerve Regeneration/genetics , Organ Culture Techniques , Peripheral Nerve Injuries , Peripheral Nerves/metabolism , Protein Isoforms/genetics , Protein Isoforms/metabolism , Proto-Oncogene Proteins c-ets/genetics , Proto-Oncogene Proteins c-ets/metabolism , Sensory Receptor Cells/cytology , Ternary Complex Factors/genetics , Up-Regulation/genetics , ets-Domain Protein Elk-1/genetics , ets-Domain Protein Elk-1/metabolism , ets-Domain Protein Elk-4/genetics , ets-Domain Protein Elk-4/metabolism
18.
Sci Signal ; 2(69): ra20, 2009 May 05.
Article in English | MEDLINE | ID: mdl-19417216

ABSTRACT

Transcript elongation by polymerase II paused at the Egr1 promoter is activated by mitogen-activated protein kinase phosphorylation of the ternary complex factor (TCF) ELK1 bound at multiple upstream sites and subsequent phospho-ELK1 interaction with mediator through the MED23 subunit. Consequently, Med23 knockout (KO) nearly eliminates Egr1 (early growth response factor 1) transcription in embryonic stem (ES) cells, leaving a paused polymerase at the promoter. Med23 KO did not, however, eliminate Egr1 transcription in fibroblasts. Chromatin immunoprecipitation analysis and direct visualization of fluorescently labeled TCF derivatives and mediator subunits revealed that three closely related TCFs bound to the same control regions. The relative amounts of these TCFs, which responded differently to the loss of MED23, differed in ES cells and fibroblasts. Transcriptome analysis suggests that most genes expressed in both cell types, such as Egr1, are regulated by alternative transcription factors in the two cell types that respond differently to the same signal transduction pathways.


Subject(s)
Adaptor Proteins, Signal Transducing/metabolism , Early Growth Response Protein 1/genetics , Trans-Activators/metabolism , Transcription, Genetic , Adaptor Proteins, Signal Transducing/genetics , Amino Acid Sequence , Animals , Binding Sites , Cell Line , Chromatin Immunoprecipitation , Early Growth Response Protein 1/metabolism , Embryonic Stem Cells/cytology , Embryonic Stem Cells/metabolism , Fibroblasts/cytology , Fibroblasts/metabolism , Gene Expression Profiling , Gene Expression Regulation , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Mediator Complex , Mice , Mice, Knockout , Molecular Sequence Data , Promoter Regions, Genetic/genetics , Protein Binding , RNA Polymerase II/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Sequence Homology, Amino Acid , Ternary Complex Factors/genetics , Ternary Complex Factors/metabolism , Trans-Activators/genetics
19.
BMC Mol Biol ; 10: 40, 2009 May 11.
Article in English | MEDLINE | ID: mdl-19432968

ABSTRACT

BACKGROUND: The serine protease thrombin catalyzes fibrin clot formation by converting fibrinogen into fibrin. Additionally, thrombin stimulation leads to an activation of stimulus-responsive transcription factors in different cell types, indicating that the gene expression pattern is changed in thrombin-stimulated cells. The objective of this study was to analyze the signaling cascade leading to the expression of the zinc finger transcription factor Egr-1 in thrombin-stimulated lung fibroblasts. RESULTS: Stimulation of 39M1-81 fibroblasts with thrombin induced a robust and transient biosynthesis of Egr-1. Reporter gene analysis revealed that the newly synthesized Egr-1 was biologically active. The signaling cascade connecting thrombin stimulation with Egr-1 gene expression required elevated levels of cytosolic Ca2+, the activation of diacylgycerol-dependent protein kinase C isoenzymes, and the activation of extracellular signal-regulated protein kinase (ERK). Stimulation of the cells with thrombin triggered the phosphorylation of the transcription factor Elk-1. Expression of a dominant-negative mutant of Elk-1 completely prevented Egr-1 expression in stimulated 39M1-81 cells, indicating that Elk-1 or related ternary complex factors connect the intracellular signaling cascade elicited by activation of protease-activated receptors with transcription of the Egr-1 gene. Lentiviral-mediated expression of MAP kinase phosphatase-1, a dual-specific phosphatase that dephosphorylates and inactivates ERK in the nucleus, prevented Elk-1 phosphorylation and Egr-1 biosynthesis in thrombin stimulated 39M1-81 cells, confirming the importance of nuclear ERK and Elk-1 for the upregulation of Egr-1 expression in thrombin-stimulated lung fibroblasts. 39M1-81 cells additionally express M1 muscarinic acetylcholine receptors. A comparison between the signaling cascades induced by thrombin or carbachol showed no differences, except that signal transduction via M1 muscarinic acetylcholine receptors required the transactivation of the EGF receptor, while thrombin signaling did not. CONCLUSION: This study shows that stimulus-transcription coupling in thrombin-treated lung fibroblasts relies on the elevation of the intracellular Ca2+-concentration and the activation of PKC and ERK. In the nucleus, ternary complex factors function as key proteins linking the intracellular signaling cascade with enhanced transcription of the Egr-1 gene. This study further shows that the dominant-negative Elk-1 mutant is a valuable tool to study Elk-1-mediated gene transcription.


Subject(s)
Calcium/metabolism , Early Growth Response Protein 1/biosynthesis , Extracellular Signal-Regulated MAP Kinases/metabolism , Fibroblasts/metabolism , Ternary Complex Factors/genetics , Thrombin/metabolism , Transcriptional Activation , Up-Regulation , Animals , Cricetinae , Cricetulus , Cytosol/metabolism , Early Growth Response Protein 1/genetics , Extracellular Signal-Regulated MAP Kinases/genetics , Gene Expression , Humans , Phosphorylation , Signal Transduction , Ternary Complex Factors/metabolism , Thrombin/genetics
20.
Tohoku J Exp Med ; 216(2): 139-47, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18832796

ABSTRACT

Pancreatic carcinoma is one of the most aggressive malignancies and carries the most dismal prognoses of all cancers. A better understanding of the genes involving in tumor development may allow us to tackle this rapidly progressive disease. The Net gene belongs to the ternary complex transcription factor (TCF) family and is regulated by the Ras/mitogen-activated protein kinase-signaling pathway. Under basal conditions, Net shows strong repressing function on transcription of proto-oncogene gene c-fos. Moreover, the lower expression of Net has been noted in some carcinoma cells, such as cervical cancer. To study the effect of Net on c-fos expression and its potential role in the growth of pancreatic carcinoma, we developed a recombinant plasmid, a pEGFP-N1-Net, which codes for Net-EGFP fusion proteins, and stably transfected it into BxPC-3 human pancreatic carcinoma cells. Using stable transformants, we were able to show that overexpression of Net decreased the expression of c-fos and inhibited pancreatic cancer cell proliferation. Cell cycle analysis demonstrated that Net overexpression inhibited cell cycle progression. These findings suggested that loss of Net repression could augment c-fos expression and further trigger neoplastic cell proliferation, which was involved in the pathogenesis of pancreatic cancer. Therefore, Net might be a potential target for the treatment of c-fos-positive pancreatic cancer.


Subject(s)
Oncogene Proteins/metabolism , Pancreatic Neoplasms/pathology , Ternary Complex Factors/metabolism , Transcription Factors/metabolism , Cell Cycle , Cell Line, Tumor , Cell Proliferation , DNA, Complementary/genetics , Gene Expression Regulation, Neoplastic , Humans , Oncogene Proteins/genetics , Pancreatic Neoplasms/genetics , Proto-Oncogene Mas , Proto-Oncogene Proteins , Proto-Oncogene Proteins c-ets , Proto-Oncogene Proteins c-fos/genetics , Proto-Oncogene Proteins c-fos/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Ternary Complex Factors/genetics , Transcription Factors/genetics , Transfection
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