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1.
Protein Sci ; 32(12): e4795, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37807423

ABSTRACT

Overexpression of specific matrix metalloproteinases (MMPs) has a key role in development of several diseases, such as cancer, neurological disorders, and cardiovascular diseases due to their critical role in degradation and remodeling of the extracellular matrix (ECM). Tissue inhibitors of metalloproteinases (TIMPs), a family of four in humans, are endogenous inhibitors of MMPs. TIMPs have a high level of sequence and structure homology, with a broad range of binding and inhibition to the family of MMPs. It is important to identify the key motifs of TIMPs responsible for inhibition of MMPs to develop efficient therapeutics targeting specific MMPs. We used DNA shuffling between the human TIMP family to generate a minimal TIMP hybrid library in yeast to identify the dominant minimal MMP inhibitory regions. The minimal TIMP variants screened toward MMP-3 and MMP-9 using fluorescent-activated cell sorting (FACS). Interestingly, several minimal TIMP variants selected after screening toward MMP-3cd or MMP-9cd, with lengths as short as 20 amino acids, maintained or improved binding to MMP-3 and MMP-9. The TIMP-MMP binding dissociation constant (KD ), in the nM range, and MMP inhibition constants (Ki ), in the pM range, of these minimal TIMP variants were similar to the N-terminal domain of TIMP-1 on the yeast surface and in solution indicating the potency of these minimal variants as MMP inhibitors. We further used molecular modeling simulation, and molecular docking of the minimal TIMP variants in complex with MMP-3cd to understand the binding and inhibition mechanism of these variants.


Subject(s)
Matrix Metalloproteinase 3 , Matrix Metalloproteinase 9 , Humans , Matrix Metalloproteinase 3/genetics , Matrix Metalloproteinase 3/chemistry , Matrix Metalloproteinase 3/metabolism , Matrix Metalloproteinase 9/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Molecular Docking Simulation , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism
2.
Future Med Chem ; 14(1): 35-51, 2022 01.
Article in English | MEDLINE | ID: mdl-34779649

ABSTRACT

Protease inhibitors are of considerable interest as anticancer agents. Matrix metalloproteinases (MMPs) were the earliest type of proteases considered as anticancer targets. The developments of MMP inhibitors (MMPIs) by pharmaceutical companies can be dated from the early 1980s. Thus far, none of the over 50 MMPIs entering clinical trials have been approved. This work summarizes the reported studies on the structure of MMPs and complexes with ligands and inhibitors, based on which, the authors analyzed the clinical failures of MMPIs in a structural biological manner. Furthermore, MMPs were systematically compared with urokinase, a protease-generating plasmin, which plays similar pathological roles in cancer development; the reasons for the clinical successes of urokinase inhibitors and the clinical failures of MMPIs are discussed.


Subject(s)
Matrix Metalloproteinase Inhibitors/therapeutic use , Matrix Metalloproteinases/metabolism , Neoplasms/drug therapy , Binding Sites , Catalytic Domain , Humans , Hydroxamic Acids/chemistry , Hydroxamic Acids/metabolism , Hydroxamic Acids/therapeutic use , Matrix Metalloproteinase Inhibitors/chemistry , Matrix Metalloproteinase Inhibitors/metabolism , Matrix Metalloproteinases/chemistry , Molecular Dynamics Simulation , Neoplasms/metabolism , Neoplasms/pathology , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism , Urokinase-Type Plasminogen Activator/metabolism , Urokinase-Type Plasminogen Activator/therapeutic use
3.
Biomolecules ; 10(5)2020 05 05.
Article in English | MEDLINE | ID: mdl-32380782

ABSTRACT

Matrix metalloproteinases are enzymes that degrade the extracellular matrix. They have different substrates but similar structural organization. Matrix metalloproteinases are involved in many physiological and pathological processes and there is a need to develop inhibitors for these enzymes in order to modulate the degradation of the extracellular matrix (ECM). There exist two classes of inhibitors: endogenous and synthetics. The development of synthetic inhibitors remains a great challenge due to the low selectivity and specificity, side effects in clinical trials, and instability. An extensive review of currently reported synthetic inhibitors and description of their properties is presented.


Subject(s)
Matrix Metalloproteinase Inhibitors/chemistry , Matrix Metalloproteinases/metabolism , Tissue Inhibitor of Metalloproteinases/metabolism , Animals , Drug Discovery/methods , Humans , Matrix Metalloproteinase Inhibitors/adverse effects , Matrix Metalloproteinase Inhibitors/pharmacokinetics , Tissue Inhibitor of Metalloproteinases/chemistry
4.
J Biol Chem ; 294(20): 8037-8045, 2019 05 17.
Article in English | MEDLINE | ID: mdl-30926607

ABSTRACT

The protease ADAMTS7 functions in the extracellular matrix (ECM) of the cardiovascular system. However, its physiological substrate specificity and mechanism of regulation remain to be explored. To address this, we conducted an unbiased substrate analysis using terminal amine isotopic labeling of substrates (TAILS). The analysis identified candidate substrates of ADAMTS7 in the human fibroblast secretome, including proteins with a wide range of functions, such as collagenous and noncollagenous extracellular matrix proteins, growth factors, proteases, and cell-surface receptors. It also suggested that autolysis occurs at Glu-729-Val-730 and Glu-732-Ala-733 in the ADAMTS7 Spacer domain, which was corroborated by N-terminal sequencing and Western blotting. Importantly, TAILS also identified proteolysis of the latent TGF-ß-binding proteins 3 and 4 (LTBP3/4) at a Glu-Val and Glu-Ala site, respectively. Using purified enzyme and substrate, we confirmed ADAMTS7-catalyzed proteolysis of recombinant LTBP4. Moreover, we identified multiple additional scissile bonds in an N-terminal linker region of LTBP4 that connects fibulin-5/tropoelastin and fibrillin-1-binding regions, which have an important role in elastogenesis. ADAMTS7-mediated cleavage of LTBP4 was efficiently inhibited by the metalloprotease inhibitor TIMP-4, but not by TIMP-1 and less efficiently by TIMP-2 and TIMP-3. As TIMP-4 expression is prevalent in cardiovascular tissues, we propose that TIMP-4 represents the primary endogenous ADAMTS7 inhibitor. In summary, our findings reveal LTBP4 as an ADAMTS7 substrate, whose cleavage may potentially impact elastogenesis in the cardiovascular system. We also identify TIMP-4 as a likely physiological ADAMTS7 inhibitor.


Subject(s)
ADAMTS Proteins , Fibroblasts/enzymology , Latent TGF-beta Binding Proteins , Proteolysis , Tissue Inhibitor of Metalloproteinases , ADAMTS Proteins/chemistry , ADAMTS Proteins/genetics , ADAMTS Proteins/metabolism , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/genetics , Extracellular Matrix Proteins/metabolism , HEK293 Cells , Humans , Latent TGF-beta Binding Proteins/chemistry , Latent TGF-beta Binding Proteins/genetics , Latent TGF-beta Binding Proteins/metabolism , Protein Domains , Proteomics , Tissue Inhibitor of Metalloproteinase-1/chemistry , Tissue Inhibitor of Metalloproteinase-1/genetics , Tissue Inhibitor of Metalloproteinase-1/metabolism , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinases/metabolism , Tropoelastin/chemistry , Tropoelastin/genetics , Tropoelastin/metabolism , Tissue Inhibitor of Metalloproteinase-4
5.
Angew Chem Int Ed Engl ; 58(12): 4051-4055, 2019 03 18.
Article in English | MEDLINE | ID: mdl-30615822

ABSTRACT

De novo drug discovery is still a challenge in the search for potent and selective modulators of therapeutically relevant target proteins. Here, we disclose the unexpected discovery of a peptidic ligand 1 by X-ray crystallography, which was auto-tailored by the therapeutic target MMP-13 through partial self-degradation and subsequent structure-based optimization to a highly potent and selective ß-sheet peptidomimetic inhibitor derived from the endogenous tissue inhibitors of metalloproteinases (TIMPs). The incorporation of non-proteinogenic amino acids in combination with a cyclization strategy proved to be key for the de novo design of TIMP peptidomimetics. The optimized cyclic peptide 4 (ZHAWOC7726) is membrane permeable with an IC50 of 21 nm for MMP-13 and an attractive selectivity profile with respect to a polypharmacology approach including the anticancer targets MMP-2 (IC50 : 170 nm) and MMP-9 (IC50 : 140 nm).


Subject(s)
Drug Design , Protease Inhibitors/chemistry , Binding Sites , Crystallography, X-Ray , Cyclization , Matrix Metalloproteinase 13/chemistry , Matrix Metalloproteinase 13/metabolism , Matrix Metalloproteinase Inhibitors/chemical synthesis , Matrix Metalloproteinase Inhibitors/chemistry , Matrix Metalloproteinase Inhibitors/metabolism , Molecular Dynamics Simulation , Peptides, Cyclic/chemistry , Peptides, Cyclic/metabolism , Peptidomimetics , Protease Inhibitors/chemical synthesis , Protease Inhibitors/metabolism , Tissue Inhibitor of Metalloproteinases/chemistry
6.
Genome Biol Evol ; 8(4): 1056-71, 2016 Apr 13.
Article in English | MEDLINE | ID: mdl-26957029

ABSTRACT

Deciphering the events leading to protein evolution represents a challenge, especially for protein families showing complex evolutionary history. Among them, TIMPs represent an ancient eukaryotic protein family widely distributed in the animal kingdom. They are known to control the turnover of the extracellular matrix and are considered to arise early during metazoan evolution, arguably tuning essential features of tissue and epithelial organization. To probe the structure and molecular evolution of TIMPs within metazoans, we report the mining and structural characterization of a large data set of TIMPs over approximately 600 Myr. The TIMPs repertoire was explored starting from the Cnidaria phylum, coeval with the origins of connective tissue, to great apes and humans. Despite dramatic sequence differences compared with highest metazoans, the ancestral proteins displayed the canonical TIMP fold. Only small structural changes, represented by an α-helix located in the N-domain, have occurred over the evolution. Both the occurrence of such secondary structure elements and the relative solvent accessibility of the corresponding residues in the three-dimensional structures raises the possibility that these sites represent unconserved element prone to accept variations.


Subject(s)
Cnidaria/chemistry , Cnidaria/genetics , Evolution, Molecular , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics , Amino Acid Sequence , Animals , Conserved Sequence , Models, Molecular , Phylogeny , Protein Conformation , Sequence Alignment
7.
J Biol Chem ; 290(10): 6620-9, 2015 Mar 06.
Article in English | MEDLINE | ID: mdl-25564618

ABSTRACT

ADAMDEC1 is a proteolytically active metzincin metalloprotease displaying rare active site architecture with a zinc-binding Asp residue (Asp-362). We previously demonstrated that substitution of Asp-362 for a His residue, thereby reconstituting the canonical metzincin zinc-binding environment with three His zinc ligands, increases the proteolytic activity. The protease also has an atypically short domain structure with an odd number of Cys residues in the metalloprotease domain. Here, we investigated how these rare structural features in the ADAMDEC1 metalloprotease domain impact the proteolytic activity, the substrate specificity, and the effect of inhibitors. We identified carboxymethylated transferrin (Cm-Tf) as a new ADAMDEC1 substrate and determined the primary and secondary cleavage sites, which suggests a strong preference for Leu in the P1' position. Cys(392), present in humans but only partially conserved within sequenced ADAMDEC1 orthologs, was found to be unpaired, and substitution of Cys(392) for a Ser increased the reactivity with α2-macroglobulin but not with casein or Cm-Tf. Substitution of Asp(362) for His resulted in a general increase in proteolytic activity and a change in substrate specificity was observed with Cm-Tf. ADAMDEC1 was inhibited by the small molecule inhibitor batimastat but not by tissue inhibitor of metalloproteases (TIMP)-1, TIMP-2, or the N-terminal inhibitory domain of TIMP-3 (N-TIMP-3). However, N-TIMP-3 displayed profound inhibitory activity against the D362H variants with a reconstituted consensus metzincin zinc-binding environment. We hypothesize that these unique features of ADAMDEC1 may have evolved to escape from inhibition by endogenous metalloprotease inhibitors.


Subject(s)
ADAM Proteins/chemistry , Catalytic Domain , Metalloproteases/chemistry , Tissue Inhibitor of Metalloproteinases/chemistry , ADAM Proteins/antagonists & inhibitors , ADAM Proteins/genetics , Amino Acid Sequence/genetics , Crystallography, X-Ray , Gene Expression Regulation, Enzymologic , Humans , Metalloproteases/antagonists & inhibitors , Metalloproteases/genetics , Protein Structure, Tertiary , Proteolysis , Substrate Specificity , Tissue Inhibitor of Metalloproteinases/metabolism , Zinc/chemistry
8.
PLoS One ; 8(9): e75836, 2013.
Article in English | MEDLINE | ID: mdl-24073280

ABSTRACT

Matrix metalloproteinases (MMPs) play central roles in vertebrate tissue development, remodeling, and repair. The endogenous tissue inhibitors of metalloproteinases (TIMPs) regulate proteolytic activity by binding tightly to the MMP active site. While each of the four TIMPs can inhibit most MMPs, binding data reveal tremendous heterogeneity in affinities of different TIMP/MMP pairs, and the structural features that differentiate stronger from weaker complexes are poorly understood. Here we report the crystal structure of the comparatively weakly bound human MMP-10/TIMP-2 complex at 2.1 Å resolution. Comparison with previously reported structures of MMP-3/TIMP-1, MT1-MMP/TIMP-2, MMP-13/TIMP-2, and MMP-10/TIMP-1 complexes offers insights into the structural basis of binding selectivity. Our analyses identify a group of highly conserved contacts at the heart of MMP/TIMP complexes that define the conserved mechanism of inhibition, as well as a second category of diverse adventitious contacts at the periphery of the interfaces. The AB loop of the TIMP N-terminal domain and the contact loops of the TIMP C-terminal domain form highly variable peripheral contacts that can be considered as separate exosite interactions. In some complexes these exosite contacts are extensive, while in other complexes the AB loop or C-terminal domain contacts are greatly reduced and appear to contribute little to complex stability. Our data suggest that exosite interactions can enhance MMP/TIMP binding, although in the relatively weakly bound MMP-10/TIMP-2 complex they are not well optimized to do so. Formation of highly variable exosite interactions may provide a general mechanism by which TIMPs are fine-tuned for distinct regulatory roles in biology.


Subject(s)
Matrix Metalloproteinase 10/chemistry , Matrix Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinase-2/chemistry , Tissue Inhibitor of Metalloproteinases/chemistry , Binding Sites , Catalytic Domain , Crystallography, X-Ray , Humans , Matrix Metalloproteinase 10/metabolism , Matrix Metalloproteinases/metabolism , Protein Binding , Protein Structure, Tertiary , Substrate Specificity , Tissue Inhibitor of Metalloproteinase-2/metabolism , Tissue Inhibitor of Metalloproteinases/metabolism
9.
Bauru; s.n; 2013. 83 p. ilus, tab, graf.
Thesis in Portuguese | BBO - Dentistry | ID: biblio-866486

ABSTRACT

A evolução das resinas compostas fez com que esses materiais passassem a ter uma durabilidade maior e características estéticas muito boas, mas o risco de cárie recorrente é ainda um problema a ser resolvido. Na tentativa de solucionar esse problema, estudos vêm sendo conduzidos na tentativa de se formularem resinas compostas contendo agentes antibacterianos, como é o caso da incorporação de clorexidina (CHX). Outro fato que impede a longevidade deste material é a degradação de matriz de colágeno por proteases ativadas por pH ácido. Para tentar contornar esse problema, a adição de clorexidina, assim como Epigallocatechin gallate (EGCg), clássicos antibacterianos e inibidores de proteases da matriz , como as metaloproteinases da matriz (MMP) a resinas, poderia melhorar a eficácia destes materiais como substitutos de dentina em procedimentos restauradores, aumentando a longevidade do tratamento restaurador, mediante preservação das propriedades mecânicas do material. Assim, o objetivo desse estudo é avaliar o poder de inibição de resinas experimentais contendo inibidores conhecidos de proteases da matriz sobre gelatinases e colagenase. Para isso, copolímeros experimentais foram preparados combinando Bis-GMA com o diluente TEGDMA (70/30 mol%). Com exceção do copolímero placebo (sem drogas), EGCg ou CHX foram incorporados a 1% em peso isoladamente ou em combinação, a 0,5% em peso cada. Amostras contendo EGCg, CHX ou EGCg e CHX concentradas 10X foram obtidas do armazenamento de espécimes polimerizados da resina experimental em água deionizada (1 mL) após o período de 24h a 37°C e sua posterior concentração. O efeito da ação dos inibidores foi checado por zimografia e confirmado por um ensaio enzimático específico para colagenases e gelatinases. Os dados passaram por teste de homogeneidade (Bartlett) e normalidade (Kolmogorov-Smirnov) e foram avaliados por ANOVA a 2 critérios, seguido pelo teste de Bonferroni para comparações individuais (p<0,05). Os resultados...


The evolution of composite resins made these materials to have a greater durability and very good esthetics characteristics, but the risk of recurrent caries is still a problem to be solved. In the attempt to solve this problem, studies are being conducted with the purpose to formulate composite resins containing antibacterial agents, such as chlorhexidine (CHX). Another fact that prevents the longevity of this material is the degradation of the collagen matrix by the proteases activated by acidic pH. In order to solve this problem, the addition of chlorhexidine and/or Epigallocatechin gallate (EGCg), classical antibacterial agents and inhibitors of matrix proteases, such as matrix metalloproteinases (MMP) in resins, could improve the efficacy of these materials as dentin substitutes in restorative procedures, increasing the longevity of the restorative treatment, while preserving the mechanical properties of the material. Thus, the aim of this study is to evaluate the ability of experimental resins containing known matrix protease inhibitors on the inhibition of gelatinases and collagenase. For this purpose, experimental copolymers were prepared combining Bis-GMA with the diluent TEGDMA (70/30 mol%). Except for the placebo copolymer (drug free), EGCg or CHX were incorporated at 1% in weight, isolated or in combination (0.5% in weight each). Samples containing EGCg, CHX or EGCg and CHX concentrated 10X were obtained after storage of polymerized specimens of the experimental resin in deionized water (1 mL) after the period of 24 h, at 37°C and after that were concentra. The effect of the action of the inhibitors was checked by zymography and confirmed by an enzymatic test specific for collagenases and gelatinases. The data passed in the tests of homogeneity (Bartlett test) and normality (Kolmogorov-Smirnov test), and were evaluated by 2-way ANOVA, followed by Bonferroni test for individual comparisons (p<0.05). The results of this study showed that the...


Subject(s)
Chlorhexidine/chemistry , Collagenases/chemistry , Gelatinases/chemistry , Tissue Inhibitor of Metalloproteinases/chemistry , Composite Resins/chemistry , Analysis of Variance , Gels/chemistry , Materials Testing
10.
Fish Shellfish Immunol ; 33(3): 645-51, 2012 Sep.
Article in English | MEDLINE | ID: mdl-22771965

ABSTRACT

Tissue inhibitor of metalloproteinases (TIMPs) were originally characterized as inhibitors of matrix metalloproteinases (MMPs), but their range of activities has been found to be broader as it includes the inhibition of several of the MMPs, etc. The cDNA encoding TIMP-4-like gene from blood clam Tegillarca granosa (designated as Tg-TIMP-4-like) which is the first tissue inhibitor of metalloproteinase identified in blood clams, was cloned and characterized. It was of 1164 bp, and an open reading frame (ORF) of 666 bp encoding a putative protein of 222 amino acids. The predicted amino acid sequence comprised all recognized functional domains found in other TIMP homologues and showed the highest (30.56%) identity to the TIMP-1.3 from Crassostrea gigas. Several highly conserved motifs including several TIMP signatures, amino acid residue Cys³° responsible for coordinating the metal ions, the Cys-X-Cys motif and the putative NTR (netrin) domain were almost completely conserved in the deduced amino acid of Tg-TIMP-4 like, which indicated that Tg-TIMP-4-like should be a member of the TIMP family. The mRNA expression of Tg-TIMP-4-like in the tissues of mantle, adductor muscle, foot, gill, hemocyte and hepatopancreas was examined by quantitative real-time PCR (qT-PCR) and mRNA transcripts of Tg-TIMP-4-like were mainly detected in hemocyte, and weakly detected in the other tissues. We also observed that Tg-TIMP-4 like mRNA accumulated significantly during Vibrio parahaemolyticus, Peptidogylcan (PGN) and Lipopolysaccharide (LPS) challenge, whereas the timing and quantitative differences of mRNA expression against different challenge indicated that Tg-TIMP-4-like may play a pivotal role in mollusc defense mechanisms.


Subject(s)
Arcidae/genetics , Arcidae/metabolism , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinases/metabolism , Amino Acid Sequence , Animals , Arcidae/immunology , Arcidae/microbiology , Base Sequence , Cloning, Molecular , DNA, Complementary/genetics , Gene Expression Profiling/veterinary , Gene Expression Regulation , Lipopolysaccharides/administration & dosage , Molecular Sequence Data , Organ Specificity , Peptidoglycan/administration & dosage , Phylogeny , RNA, Messenger/analysis , Real-Time Polymerase Chain Reaction/veterinary , Sequence Alignment/veterinary , Sequence Homology, Amino Acid , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/immunology , Vibrio parahaemolyticus/physiology
11.
Heart Fail Rev ; 17(4-5): 693-706, 2012 Sep.
Article in English | MEDLINE | ID: mdl-21717224

ABSTRACT

Remodeling of the myocardium and the extracellular matrix (ECM) occurs in heart failure irrespective of its initial cause. The ECM serves as a scaffold to provide structural support as well as housing a number of cytokines and growth factors. Hence, disruption of the ECM will result in structural instability as well as activation of a number of signaling pathways that could lead to fibrosis, hypertrophy, and apoptosis. The ECM is a dynamic entity that undergoes constant turnover, and the integrity of its network structure is maintained by a balance in the function of matrix metalloproteinases (MMPs) and their inhibitors, the tissue inhibitor of metalloproteinases (TIMPs). In heart disease, levels of MMPs and TIMPs are altered resulting in an imbalance between these two families of proteins. In this review, we will discuss the structure, function, and regulation of TIMPs, their MMP-independent functions, and their role in heart failure. We will review the knowledge that we have gained from clinical studies and animal models on the contribution of TIMPs in the development and progression of heart disease. We will further discuss how ECM molecules and regulatory genes can be used as biomarkers of disease in heart failure patients.


Subject(s)
Extracellular Matrix/metabolism , Heart Failure/metabolism , Matrix Metalloproteinases/metabolism , Tissue Inhibitor of Metalloproteinases/metabolism , Ventricular Remodeling/physiology , Biomarkers/metabolism , Humans , Male , Molecular Structure , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics
12.
An. R. Acad. Farm ; 77(4): 99-117, oct.-dic. 2011. tab, ilus
Article in Spanish | IBECS | ID: ibc-96170

ABSTRACT

Siguiendo una estrategia de diseño basado en fragmentos, se describe la síntesis de una nueva serie de inhibidores de MMP-2. Para ello, se parte de un fragmento que contiene simultáneamente un grupo hidroxamato como Zinc Binding Group (ZBG) y un grupo azida. Esta subunidad se conecta mediante química “click" con otros fragmentos lipófilos que contienen un alquino terminal y que han sido seleccionados para interaccionar de manera selectiva con el subsitio S1’ de la MMP-2. Los compuestos sintetizados más activos, 20 y 21, presentan una alta potencia inhibitoria en MMP-2. Además, el compuesto 20 presenta un prometedor perfil de selectividad frente a algunas metaloproteasas consideradas anti-diana en cáncer, como MMP-8 y MMP-9(AU)


A new series of selective MMP-2 inhibitors is described, following a fragment-based drug design approach. A fragment containing an azide group and a well known hydroxamate ZBG, was synthesized. A click chemistry reaction was used to connect the azide to lipophilic alkynes selected to interact selectively with the S1’ subunit of MMP-2. The most active compounds, 20 and 21, displayed high values of IC50 against MMP-2. In addition, compound 20 has shown also a promissing selectivity profile against some antitarget metalloproteinases in cancer, such as MMP-8, and MMP-9(AU)


Subject(s)
Humans , Tissue Inhibitor of Metalloproteinases/chemistry , Matrix Metalloproteinases/antagonists & inhibitors , Drug Design , Drug Evaluation/methods , Antineoplastic Agents/chemistry
13.
Genome Biol ; 12(11): 233, 2011 Nov 11.
Article in English | MEDLINE | ID: mdl-22078297

ABSTRACT

Orchestration of the growth and remodeling of tissues and responses of cells to their extracellular environment is mediated by metalloproteinases of the Metzincin clan. This group of proteins comprises several families of endopeptidases in which a zinc atom is liganded at the catalytic site to three histidine residues and an invariant methionine residue. Tissue inhibitors of metalloproteinases (TIMPs) are endogenous protein regulators of the matrix metalloproteinase (MMPs) family, and also of families such as the disintegrin metalloproteinases (ADAM and ADAMTS). TIMPs therefore have a pivotal role in determining the influence of the extracellular matrix, of cell adhesion molecules, and of many cytokines, chemokines and growth factors on cell phenotype. The TIMP family is an ancient one, with a single representative in lower eukaryotes and four members in mammals. Although much is known about their mechanism of action in proteinase regulation in mammalian cells, less is known about their functions in lower organisms. Recently, non-inhibitory functions of TIMPs have been identified in mammalian cells, including signaling roles downstream of specific receptors. There are clearly still questions to be answered with regard to their overall roles in biology.


Subject(s)
Matrix Metalloproteinase Inhibitors , Tissue Inhibitor of Metalloproteinases/metabolism , Animals , Biological Evolution , Catalytic Domain , Disintegrins/chemistry , Disintegrins/genetics , Disintegrins/metabolism , Drosophila melanogaster , Humans , Mammals , Matrix Metalloproteinases/metabolism , Models, Molecular , Phylogeny , Protein Binding , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism , Signal Transduction , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics
14.
J Biol Chem ; 286(23): 21002-12, 2011 Jun 10.
Article in English | MEDLINE | ID: mdl-21518756

ABSTRACT

Because of their important function, matrix metalloproteinases (MMPs) are promising drug targets in multiple diseases, including malignancies. The structure of MMPs includes a catalytic domain, a hinge, and a hemopexin domain (PEX), which are followed by a transmembrane and cytoplasmic tail domains or by a glycosylphosphatidylinositol linker in membrane-type MMPs (MT-MMPs). TIMPs-1, -2, -3, and -4 are potent natural regulators of the MMP activity. These are the inhibitory N-terminal and the non-inhibitory C-terminal structural domains in TIMPs. Based on our structural modeling, we hypothesized that steric clashes exist between the non-inhibitory C-terminal domain of TIMPs and the PEX of MMPs. Conversely, a certain mobility of the PEX relative to the catalytic domain is required to avoid these obstacles. Because of its exceedingly poor association constant and, in contrast with TIMP-2, TIMP-1 is inefficient against MT1-MMP. We specifically selected an MT1-MMP·TIMP-1 pair to test our hypothesis, because any improvement of the inhibitory potency would be readily recorded. We characterized the domain-swapped MT1-MMP chimeras in which the PEX of MMP-2 (that forms a complex with TIMP-2) and of MMP-9 (that forms a complex with TIMP-1) replaced the original PEX in the MT1-MMP structure. In contrast with the wild-type MT1-MMP, the diverse proteolytic activities of the swapped-PEX chimeras were then inhibited by both TIMP-1 and TIMP-2. Overall, our studies suggest that the structural parameters of both domains of TIMPs have to be taken into account for their re-engineering to harness the therapeutic in vivo potential of the novel TIMP-based MMP antagonists with constrained selectivity.


Subject(s)
Collagenases/chemistry , Matrix Metalloproteinase Inhibitors , Models, Molecular , Tissue Inhibitor of Metalloproteinases/chemistry , Animals , CHO Cells , Collagenases/genetics , Collagenases/metabolism , Cricetinae , Cricetulus , Humans , Mice , Protein Structure, Quaternary , Protein Structure, Tertiary , Recombinant Fusion Proteins/antagonists & inhibitors , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinases/metabolism
15.
J Biol Chem ; 285(21): 15950-9, 2010 May 21.
Article in English | MEDLINE | ID: mdl-20207734

ABSTRACT

The netrin-like (NTR) domain is a feature of several extracellular proteins, most notably the N-terminal domain of tissue inhibitors of metalloproteinases (TIMPs), where it functions as a strong inhibitor of matrix metalloproteinases and some other members of the metzincin superfamily. The presence of a C-terminal NTR domain in procollagen C-proteinase enhancers (PCPEs), proteins that stimulate the activity of astacin-like tolloid proteinases, raises the possibility that this might also have inhibitory activity. Here we show that both long and short forms of the PCPE-1 NTR domain, the latter beginning at the N-terminal cysteine known to be critical for TIMP activity, show no inhibition, at micromolar concentrations, of several members of the metzincin superfamily, including matrix metalloproteinase-2, bone morphogenetic protein-1 (a tolloid proteinase), and different ADAMTS (a disintegrin and a metalloproteinase with thrombospondin motifs) proteinases from the adamalysin family. In contrast, we report that the NTR domain within PCPE-1 leads to superstimulation of bone morphogenetic protein-1 activity in the presence of heparin and heparan sulfate. These observations point to a new mechanism whereby binding to cell surface-associated or extracellular heparin-like sulfated glycosaminoglycans might provide a means to accelerate procollagen processing in specific cellular and extracellular microenvironments.


Subject(s)
ADAM Proteins/metabolism , Extracellular Matrix Proteins/metabolism , Glycoproteins/metabolism , Tolloid-Like Metalloproteinases/metabolism , ADAM Proteins/chemistry , ADAM Proteins/genetics , Cell Line , Extracellular Matrix Proteins/chemistry , Extracellular Matrix Proteins/genetics , Glycoproteins/chemistry , Glycoproteins/genetics , Humans , Procollagen/chemistry , Procollagen/genetics , Procollagen/metabolism , Protein Structure, Tertiary , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinases/metabolism , Tolloid-Like Metalloproteinases/chemistry , Tolloid-Like Metalloproteinases/genetics
16.
Biochim Biophys Acta ; 1803(1): 55-71, 2010 Jan.
Article in English | MEDLINE | ID: mdl-20080133

ABSTRACT

Tissue inhibitors of metalloproteinases (TIMPs) are widely distributed in the animal kingdom and the human genome contains four paralogous genes encoding TIMPs 1 to 4. TIMPs were originally characterized as inhibitors of matrix metalloproteinases (MMPs), but their range of activities has now been found to be broader as it includes the inhibition of several of the disintegrin-metalloproteinases, ADAMs and ADAMTSs. TIMPs are therefore key regulators of the metalloproteinases that degrade the extracellular matrix and shed cell surface molecules. Structural studies of TIMP-MMP complexes have elucidated the inhibition mechanism of TIMPs and the multiple sites through which they interact with target enzymes, allowing the generation of TIMP variants that selectively inhibit different groups of metalloproteinases. Engineering such variants is complicated by the fact that TIMPs can undergo changes in molecular dynamics induced by their interactions with proteases. TIMPs also have biological activities that are independent of metalloproteinases; these include effects on cell growth and differentiation, cell migration, anti-angiogenesis, anti- and pro-apoptosis, and synaptic plasticity. Receptors responsible for some of these activities have been identified and their signaling pathways have been investigated. A series of studies using mice with specific TIMP gene deletions has illuminated the importance of these molecules in biology and pathology.


Subject(s)
Evolution, Molecular , Multigene Family , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism , Amino Acid Sequence , Animals , Disease , Humans , Molecular Sequence Data , Protein Engineering , Tissue Inhibitor of Metalloproteinases/deficiency , Tissue Inhibitor of Metalloproteinases/genetics
17.
Future Med Chem ; 1(6): 1095-1111, 2009 Sep.
Article in English | MEDLINE | ID: mdl-20161478

ABSTRACT

Matrix metalloproteinases (MMPs) are a group of proteases that belong to the metazincin family. These proteins consist of similar structures featuring a signaling peptide, a propeptide domain, a catalytic domain where the notable zinc ion binding site is found and a hinge region that binds to the C-terminal hemoplexin domain. MMPs can be produced by numerous cell types through secretion or localization to the cell membrane. While certain chemical compounds have been known to generally inhibit MMPs, naturally occurring proteins known as tissue inhibitors of metalloproteinases (TIMPs) effectively interact with MMPs to modify their biological roles. MMPs are very important enzymes that actively participate in remodeling the extracellular matrix by degrading certain constituents, along with promoting cell proliferation, migration, differentiation, apoptosis and angiogenesis. In normal adult tissue, they are almost undetectable; however, when perturbed through injury, disease or pregnancy, they have elevated expression. The goal of this review is to identify new experimental findings that have provided further insight into the role of MMPs in skeletal muscle, nerve and dermal tissue, as well as in the liver, heart and kidneys. Increased expression of MMPs can improve the regeneration potential of wounds; however, an imbalance between MMP and TIMP expression can prove to be destructive for afflicted tissues.


Subject(s)
Matrix Metalloproteinases/metabolism , Regeneration/physiology , Animals , Central Nervous System/physiology , Enzyme Activation , Female , Heart/physiology , Humans , Kidney/physiology , Liver/physiology , Matrix Metalloproteinase Inhibitors , Matrix Metalloproteinases/chemistry , Matrix Metalloproteinases/genetics , Muscle, Skeletal/physiology , Pregnancy , Protein Precursors/metabolism , Skin/metabolism , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism
18.
Mol Cancer ; 7: 85, 2008 Nov 21.
Article in English | MEDLINE | ID: mdl-19025595

ABSTRACT

Tissue inhibitors of metalloproteinases (TIMPs) regulate diverse processes, including extracellular matrix (ECM) remodeling, and growth factors and their receptors' activities through the inhibition of matrix metalloproteinases (MMPs). Recent evidence has shown that this family of four members (TIMP-1 to TIMP-4) can also control other important processes, such as proliferation and apoptosis, by a mechanism independent of their MMP inhibitory actions. Of these inhibitors, the most recently identified and least studied is TIMP-4. Initially cloned in human and, later, in mouse, TIMP-4 expression is restricted to heart, kidney, pancreas, colon, testes, brain and adipose tissue. This restricted expression suggests specific and different physiological functions. The present review summarizes the information available for this protein and also provides a putative structural model in order to propose potential relevant directions toward solving its function and role in diseases such as cancer.


Subject(s)
Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism , Animals , Disease Progression , Gene Expression Regulation, Enzymologic , Humans , Matrix Metalloproteinases/metabolism , Neoplasms/enzymology , Neoplasms/pathology , Organ Specificity , Tissue Inhibitor of Metalloproteinases/genetics , Tissue Inhibitor of Metalloproteinase-4
19.
Mol Biochem Parasitol ; 162(2): 142-8, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18804124

ABSTRACT

Ac-TMP-2, an immunodominant hookworm antigen encoding a tissue inhibitor of metalloproteinase (TIMP) was cloned by immunoscreening an Ancylostoma caninum larval cDNA library with sera pooled from dogs immunized with irradiated A. caninum third stage larvae (ir-L3). The open reading frame of Ac-tmp-2 cDNA encoded a 244 amino acids (predicted molecular weight of 27.7 kDa), which shared a common N-terminus with other vertebrate and invertebrate TIMPs, including Ac-TMP-1, the most abundant adult hookworm secreted protein. However Ac-TMP-2 also contains an unusual multicopy (ten) repeat of the amino acid sequence, KTVEENDE. By immunoblotting, Ac-TMP-2 was detected only in adult hookworms and their excretory secretory products although the corresponding mRNA was also detected in L3. Immunolocalization with specific antiserum showed that native Ac-TMP-2 was located in adult worm's esophagus and cephalic glands. Recombinant Ac-TMP-2 expressed in bacteria was highly immunogenic and recognized by ir-L3 immunized dog immune sera. The recombinant Ac-TMP-2 protein inhibited the human matrix metalloproteinases, MMP-2, MMP-7 and MMP-13. As an immunodominant protein having a possible role in the parasite-host relationship of canine hookworm infection, recombinant Ac-TMP-2 represents a plausible target for vaccine development.


Subject(s)
Ancylostoma/metabolism , Antigens, Helminth/chemistry , Antigens, Helminth/genetics , Helminth Proteins/chemistry , Helminth Proteins/genetics , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/genetics , Amino Acid Sequence , Ancylostoma/enzymology , Animals , Antigens, Helminth/analysis , Cloning, Molecular , Dogs , Helminth Proteins/analysis , Humans , Matrix Metalloproteinases, Secreted/antagonists & inhibitors , Matrix Metalloproteinases, Secreted/metabolism , Molecular Sequence Data , Reverse Transcriptase Polymerase Chain Reaction , Tissue Inhibitor of Metalloproteinases/analysis
20.
Postepy Hig Med Dosw (Online) ; 62: 328-36, 2008 Jul 03.
Article in Polish | MEDLINE | ID: mdl-18614970

ABSTRACT

Matrix metalloproteinases (MMPs) belong to a large family of multidomain zinc endopeptidases. They are one of the most important proteolitic enzymes which digest components of the extracellular matrix and abundant macromolecules on cell surface and take part in many physiological processes, such as apoptosis or angiogenesis. MMPs are also engaged in the pathogenesis of many diseases such as arthritis and cancer. The development of effective inhibitors and discovery of their mechanisms of action can have significant influence on therapeutic strategy.


Subject(s)
Matrix Metalloproteinases/chemistry , Matrix Metalloproteinases/metabolism , 4-Aminobenzoic Acid/metabolism , Animals , Apoptosis/physiology , Arthritis/drug therapy , Arthritis/enzymology , Autoimmune Diseases/enzymology , Cell Movement/physiology , Chloroquine/metabolism , Drug Combinations , Enzyme Activation , Extracellular Matrix/metabolism , Humans , Matrix Metalloproteinase Inhibitors , Matrix Metalloproteinases/classification , Membrane Proteins/metabolism , Models, Molecular , Neoplasms/drug therapy , Neoplasms/enzymology , Neovascularization, Physiologic/physiology , Pantothenic Acid/metabolism , Pyridoxine/metabolism , Quinacrine/metabolism , Tissue Inhibitor of Metalloproteinases/chemistry , Tissue Inhibitor of Metalloproteinases/metabolism
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