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1.
J Vis Exp ; (208)2024 Jun 21.
Article in English | MEDLINE | ID: mdl-38975789

ABSTRACT

Lens epithelial cells (LECs) play multiple important roles in maintaining the homeostasis and normal function of the lens. LECs determine lens growth, development, size, and transparency. Conversely, dysfunctional LECs can lead to cataract formation and posterior capsule opacification (PCO). Consequently, establishing a robust primary LEC culture system is important to researchers engaged in lens development, biochemistry, cataract therapeutics, and PCO prevention. However, cultivating primary LECs has long presented challenges due to their limited availability, slow proliferation rate, and delicate nature. This study addresses these hurdles by presenting a comprehensive protocol for primary LEC culture. The protocol encompasses essential steps such as the formulation of an optimized culture medium, precise isolation of lens capsules, trypsinization techniques, subculture procedures, harvest protocols, and guidelines for storage and shipment. Throughout the culture process, cell morphology was monitored using phase-contrast microscopy. To confirm the authenticity of the cultured LECs, immunofluorescence assays were conducted to detect the presence and subcellular distribution of critical lens proteins, namely αA- and γ-crystallins. This detailed protocol equips researchers with a valuable resource for cultivating and characterizing primary LECs, enabling advancements in our comprehension of lens biology and the development of therapeutic strategies for lens-related disorders.


Subject(s)
Epithelial Cells , Lens, Crystalline , Trypsin , Epithelial Cells/cytology , Lens, Crystalline/cytology , Animals , Mice , Trypsin/chemistry , Trypsin/metabolism , Cell Culture Techniques/methods , Primary Cell Culture/methods
2.
ACS Appl Mater Interfaces ; 16(28): 37248-37254, 2024 Jul 17.
Article in English | MEDLINE | ID: mdl-38957146

ABSTRACT

Gas cluster ion beam (GCIB)-assisted deposition is used to build multilayered protein-based structures. In this process, Ar3000-5000+ clusters bombard and sputter molecules from a reservoir (target) to a collector, an operation that can be sequentially repeated with multiple targets. The process occurs under a vacuum, making it adequate for further sample conservation in the dry state, since many proteins do not have long-term storage stability in the aqueous state. First of all, the stability in time and versatility in terms of molecule selection are demonstrated with the fabrication of peptide multilayers featuring a clear separation. Then, lysozyme and trypsin are used as protein models to show that the activity remaining on the collector after deposition is linearly proportional to the argon ion dose. The energy per atom (E/n) of the Ar clusters is a parameter that was also changed for lysozyme deposition, and its increase negatively affects activity. The intact detection of larger protein molecules by SDS-PAGE gel electrophoresis and a bioassay (trypsin at ≈25 kDa and glucose oxidase (GOx) at ≈80 kDa) is demonstrated. Finally, GOx and horseradish peroxidase, two proteins involved in the same enzymatic cascade, are successively deposited on ß-d-glucose to build an on-demand release material in which the enzymes and the substrate (ß-d-glucose) are combined in a dry trilayer, and the reaction occurs only upon reintroduction in aqueous medium.


Subject(s)
Glucose Oxidase , Horseradish Peroxidase , Muramidase , Trypsin , Muramidase/chemistry , Muramidase/metabolism , Glucose Oxidase/chemistry , Glucose Oxidase/metabolism , Trypsin/chemistry , Trypsin/metabolism , Horseradish Peroxidase/chemistry , Horseradish Peroxidase/metabolism , Peptides/chemistry , Animals , Glucose/chemistry
3.
Sci Rep ; 14(1): 15667, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38977741

ABSTRACT

The microreactor with two types of immobilized enzymes, exhibiting excellent orthogonal performance, represents an effective approach to counteract the reduced digestion efficiency resulting from the absence of a single enzyme cleavage site, thereby impacting protein identification. In this study, we developed a hydrophilic dual-enzyme microreactor characterized by rapid mass transfer and superior enzymatic activity. Initially, we selected KIT-6 molecular sieve as the carrier for the dual-IMER due to its three-dimensional network pore structure. Modification involved co-deposition of polyethyleneimine (PEI) and acrylamide (AM) as amine donors, along with dopamine to enhance material hydrophilicity. Remaining amino and double bond functional groups facilitated stepwise immobilization of trypsin and Glu-C. Digestion times for bovine serum albumin (BSA) and bovine hemoglobin (BHb) on the dual-IMER were significantly reduced compared to solution-based digestion (1 min vs. 36 h), resulting in improved sequence coverage (91.30% vs. 82.7% for BSA; 90.24% vs. 89.20% for BHb). Additionally, the dual-IMER demonstrated excellent durability, retaining 96.08% relative activity after 29 reuse cycles. Enhanced protein digestion efficiency can be attributed to several factors: (1) KIT-6's large specific surface area, enabling higher enzyme loading capacity; (2) Its three-dimensional network pore structure, facilitating faster mass transfer and substance diffusion; (3) Orthogonality of trypsin and Glu-C enzyme cleavage sites; (4) The spatial effect introduced by the chain structure of PEI and glutaraldehyde's spacing arm, reducing spatial hindrance and enhancing enzyme-substrate interactions; (5) Mild and stable enzyme immobilization. The KIT-6-based dual-IMER offers a promising technical tool for protein digestion, while the PDA/PEI/AM-KIT-6 platform holds potential for immobilizing other proteins or active substances.


Subject(s)
Acrylamide , Dopamine , Enzymes, Immobilized , Polyethyleneimine , Serum Albumin, Bovine , Trypsin , Polyethyleneimine/chemistry , Dopamine/chemistry , Dopamine/metabolism , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Acrylamide/chemistry , Trypsin/chemistry , Trypsin/metabolism , Animals , Cattle , Serum Albumin, Bovine/chemistry , Serum Albumin, Bovine/metabolism , Porosity , Hydrophobic and Hydrophilic Interactions , Hemoglobins/chemistry , Hemoglobins/metabolism , Proteolysis
4.
Langmuir ; 40(26): 13505-13514, 2024 Jul 02.
Article in English | MEDLINE | ID: mdl-38896798

ABSTRACT

Development of an energy-driven self-assembly process is a matter of interest for understanding and mimicking diverse ranges of biological and environmental patterns in a synthetic system. In this article, first we demonstrate transient and temporally controlled self-assembly of a DNA-histone condensate where trypsin (already present in the system) hydrolyzes histone, resulting in disassembly. Upon performing this dynamic self-assembly process in a gel matrix under an electric field, we observe diverse kinds of DNA patterning across the gel matrix depending on the amount of trypsin, incubation time of the reaction mixture, and gel porosity. Notably, here, the micrometer-sized DNA-histone condensate does not move through the gel and only free DNA can pass; therefore, transport and accumulation of DNA at different zones depend on the release rate of DNA by trypsin. Furthermore, we show that the viscoelasticity of the native gel increases in the presence of DNA and a pattern over gel viscoelasticity at different zones can be achieved by tuning the amount of enzyme, i.e., the dissociation rate of the DNA-histone condensate. We believe enabling spatiotemporally controlled DNA patterning by applying an electric field will be potentially important in designing different kinds of spatiotemporally distinct dynamic materials.


Subject(s)
DNA , Elasticity , Histones , Hydrogels , Trypsin , DNA/chemistry , Histones/chemistry , Histones/metabolism , Trypsin/chemistry , Trypsin/metabolism , Hydrogels/chemistry , Viscosity , Electrophoresis
5.
J Proteomics ; 303: 105215, 2024 Jul 15.
Article in English | MEDLINE | ID: mdl-38843981

ABSTRACT

Automated methods for enzyme immobilization via 4-triethoxysilylbutyraldehyde (TESB) derived silicone-based coupling agents were developed. TESB and its oxidized derivative, 4-triethoxysilylbutanoic acid (TESBA), were determined to be the most effective. The resulting immobilized enzyme particles (IEPs) displayed robustness, rapid digestion, and immobilization efficiency of 51 ± 8%. Furthermore, we automated the IEP procedure, allowing for multiple enzymes, and/or coupling agents to be fabricated at once, in a fraction of the time via an Agilent Bravo. The automated trypsin TESB and TESBA IEPs were shown to rival a classical in-gel digestion method. Moreover, pepsin IEPs favored cleavage at leucine (>50%) over aromatic and methionine residues. The IEP method was then adapted for an in-situ immobilized enzyme microreactor (IMER) fabrication. We determined that TESBA could functionalize the silica capillary's inner wall while simultaneously acting as an enzyme coupler. The IMER digestion of bovine serum albumin (BSA), mirroring IEP digestion conditions, yielded a 33-40% primary sequence coverage per LC-MS/MS analysis in as little as 15 min. Overall, our findings underscore the potential of both IEP and IMER methods, paving the way for automated analysis and a reduction in enzyme waste through reuse, thereby contributing to a more cost-effective and timely study of the proteome. SIGNIFICANCE: This research introduces 4-triethoxysilylbutyraldehyde (TESB) and its derivatives as silicon-based enzyme coupling agents and an automated liquid handling method for bottom-up proteomics (BUP) while streamlining sample preparation for high-throughput processing. Additionally, immobilized enzyme particle (IEP) fabrication and digestion within the 96-well plate allows for flexibility in protocol where different enzyme-coupler combinations can be employed simultaneously. By enabling the digestion of entire microplates and reducing manual labor, the proposed method enhances reproducibility and offers a more efficient alternative to classical in-gel techniques. Furthermore, pepsin IEPs were noted to favor cleavage at leucine residues which represents an interesting finding when compared to the literature that warrants further study. The capability of immobilized enzyme microreactors (IMER) for rapid digestion (in as little as 15 min) demonstrated the system's efficiency and potential for rapid proteomic analysis. This advancement in BUP not only improves efficiency, but also opens avenues for a fully automated, mass spectrometry-integrated proteomics workflow, promising to expedite research and discoveries in complex biological studies.


Subject(s)
Enzymes, Immobilized , Proteomics , Proteomics/methods , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Silicon/chemistry , Serum Albumin, Bovine/chemistry , Serum Albumin, Bovine/analysis , Serum Albumin, Bovine/metabolism , Workflow , Animals , Trypsin/chemistry , Trypsin/metabolism , Cattle
6.
Analyst ; 149(14): 3783-3792, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38845587

ABSTRACT

Abrin toxin, highly dangerous with an estimated human lethal dose of 0.1-1 µg per kg body weight, has attracted much attention regarding criminal and terroristic misuse over the past decade. Therefore, developing a rapid detection method for abrin toxin is of great significance in the field of biosecurity. In this study, based on the specific dissociation method of an immobilized enzyme reactor, the trypsin immobilized reactor Fe3O4@CTS-GA-Try was prepared to replace free trypsin, and the immobilized enzyme digestion process was systematically investigated and optimized by using bovine serum albumin as the simulant of abrin. After 5 min one-step denaturation and reduction, a satisfactory peptide number and coverage were yielded with only 15 s assisted by an ultrasound probe to identify model proteins. Subsequently, abrin was rapidly digested using the established method, resulting in a stable and highly reproducible characteristic peptide number of 39, which can be analyzed by nanoelectrospray ionization coupled with high-resolution mass spectrometry. With the acquisition mode of full MS scan coupled with PRM, not only MS spectroscopy of total abrin peptides but also the corresponding MS/MS spectroscopy of specific abrin peptides can achieve the characteristic detection of abrin toxin and its different isoforms in less than 10 minutes, with high repeatability. This assay provides a universal platform and has great potential for the development of on-site detection and rapid mass spectrometric analysis techniques for macromolecular protein toxins and can further be applied to the integrated detection of chemical and biological agents.


Subject(s)
Abrin , Enzymes, Immobilized , Serum Albumin, Bovine , Trypsin , Abrin/analysis , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Trypsin/metabolism , Trypsin/chemistry , Serum Albumin, Bovine/chemistry , Animals , Cattle , Tandem Mass Spectrometry/methods , Spectrometry, Mass, Electrospray Ionization/methods , Proteolysis
7.
J Chem Inf Model ; 64(13): 5194-5206, 2024 Jul 08.
Article in English | MEDLINE | ID: mdl-38870039

ABSTRACT

The serine protease trypsin forms a tightly bound inhibitor complex with the bovine pancreatic trypsin inhibitor (BPTI). The complex is stabilized by the P1 residue Lys15, which interacts with negatively charged amino acids at the bottom of the S1 pocket. Truncating the P1 residue of wildtype BPTI to α-aminobutyric acid (Abu) leaves a complex with moderate inhibitor strength, which is held in place by additional hydrogen bonds at the protein-protein interface. Fluorination of the Abu residue partially restores the inhibitor strength. The mechanism with which fluorination can restore the inhibitor strength is unknown, and accurate computational investigation requires knowledge of the binding and unbinding pathways. The preferred unbinding pathway is likely to be complex, as encounter states have been described before, and unrestrained umbrella sampling simulations of these complexes suggest additional energetic minima. Here, we use random acceleration molecular dynamics to find a new metastable state in the unbinding pathway of Abu-BPTI variants and wildtype BPTI from trypsin, which we call the prebound state. The prebound state and the fully bound state differ by a substantial shift in the position, a slight shift in the orientation of the BPTI variants, and changes in the interaction pattern. Particularly important is the breaking of three hydrogen bonds around Arg17. Fluorination of the P1 residue lowers the energy barrier of the transition between the fully bound state and prebound state and also lowers the energy minimum of the prebound state. While the effect of fluorination is in general difficult to quantify, here, it is in part caused by favorable stabilization of a hydrogen bond between Gln194 and Cys14. The interaction pattern of the prebound state offers insights into the inhibitory mechanism of BPTI and might add valuable information for the design of serine protease inhibitors.


Subject(s)
Aprotinin , Molecular Dynamics Simulation , Protein Binding , Trypsin , Trypsin/metabolism , Trypsin/chemistry , Aprotinin/chemistry , Aprotinin/metabolism , Animals , Cattle , Halogenation , Hydrogen Bonding , Protein Conformation , Trypsin Inhibitors/chemistry , Trypsin Inhibitors/metabolism , Trypsin Inhibitors/pharmacology
8.
Cell Rep Methods ; 4(6): 100795, 2024 Jun 17.
Article in English | MEDLINE | ID: mdl-38861989

ABSTRACT

The polyclonal repertoire of circulating antibodies potentially holds valuable information about an individual's humoral immune state. While bottom-up proteomics is well suited for serum proteomics, the vast number of antibodies and dynamic range of serum challenge this analysis. To acquire the serum proteome more comprehensively, we incorporated high-field asymmetric waveform ion-mobility spectrometry (FAIMS) or two-dimensional chromatography into standard trypsin-based bottom-up proteomics. Thereby, the number of variable region (VR)-related spectra increased 1.7-fold with FAIMS and 10-fold with chromatography fractionation. To match antibody VRs to spectra, we combined de novo searching and BLAST alignment. Validation of this approach showed that, as peptide length increased, the de novo accuracy decreased and BLAST performance increased. Through in silico calculations on antibody repository sequences, we determined the uniqueness of tryptic VR peptides and their suitability as antibody surrogate. Approximately one-third of these peptides were unique, and about one-third of all antibodies contained at least one unique peptide.


Subject(s)
Peptides , Trypsin , Humans , Trypsin/chemistry , Trypsin/metabolism , Peptides/immunology , Peptides/chemistry , Immunoglobulin Variable Region/chemistry , Immunoglobulin Variable Region/immunology , Proteomics/methods , Ion Mobility Spectrometry/methods
9.
Anal Chem ; 96(24): 9859-9865, 2024 Jun 18.
Article in English | MEDLINE | ID: mdl-38830623

ABSTRACT

In drug discovery, ligands are sought that modulate the (mal-)function of medicinally relevant target proteins. In order to develop new drugs, typically a multitude of potential ligands are initially screened for binding and subsequently characterized for their affinity. Nuclear magnetic resonance (NMR) is a well-established and highly sensitive technology for characterizing such interactions. However, it has limited throughput, because only one sample can be measured at a time. In contrast, magnetic resonance imaging (MRI) is inherently parallel and MR parameters can conveniently be encoded in its images, potentially offering increased sample throughput. We explore this application using a custom-built 9-fold sample holder and a 19F-MRI coil. With this setup, we show that ligand binding can be detected by T2-weighted 19F-MRI using 4-(trifluoromethyl)benzamidine (TFBA) and trypsin as the reporter ligand and target protein, respectively. Furthermore, we demonstrate that the affinity of nonfluorinated ligands can be determined in a competition format by monitoring the dose-dependent displacement of TFBA. By comparing 19F-T2-weighted MR images of TFBA in the presence of different benzamidine (BA) concentrations-all recorded in parallel-the affinity of BA could be derived. Therefore, this approach promises parallel characterization of protein-ligand interactions and increased throughput of biochemical assays, with potential for increased sensitivity when combined with hyperpolarization techniques.


Subject(s)
Benzamidines , Ligands , Benzamidines/chemistry , Protein Binding , Trypsin/metabolism , Trypsin/chemistry , Magnetic Resonance Imaging/methods , Proteins/chemistry , Proteins/metabolism
10.
Methods Mol Biol ; 2832: 233-239, 2024.
Article in English | MEDLINE | ID: mdl-38869800

ABSTRACT

The regulation of proteolytic enzymes by protease inhibitors is crucial for maintaining the balance between protein synthesis and degradation, preventing uncontrolled proteolysis and fine-tuning cellular processes essential for optimal function and survival of the plants. It is known that the plant protease inhibitors activities are induced in defense of biotic as well as abiotic stresses. Thus, beyond their fundamental physiological functions, their involvement in stress responses, such as drought, cold, and salinity, is of equally significant. The X-ray film contact print method is an effective method for assessing various protease inhibitors exposed to stress conditions. In this approach, initially plant protease inhibitors will be separated using electrophoresis, and then the gel is treated with trypsin, which inhibits protease inhibitors. This gel when placed on X-ray film, the trypsin will digest the gelatin layer present on the film and the gelatinolytic activity stalled at the premises of protease inhibitors. This will provide the impression of the differentially expressed protease inhibitors in stress-treated plants.


Subject(s)
Protease Inhibitors , Stress, Physiological , Protease Inhibitors/pharmacology , Plant Proteins/metabolism , Plant Proteins/genetics , Gene Expression Regulation, Plant/drug effects , Plants/metabolism , X-Rays , Trypsin/metabolism
11.
Talanta ; 277: 126392, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38865959

ABSTRACT

Heparin is a highly negatively charged sulfated linear polymer glycosaminoglycan that has been widely used as an anticoagulant in medicine. Protamine is a cationic protein rich in arginine that is used to treat the blood-brain barrier during excess heparin surgery. Trypsin is the most important digestive enzyme-encoding generated by the pancreas and can specifically cleave the carboxyl ends of arginine and lysine residues. Heparin, protamine, and trypsin interact and constrain each other, and their fluctuations reflect the body's dysfunction. Therefore, it is necessary to develop a fast, sensitive, and highly selective assay for regularly monitoring the levels of heparin, protamine, and trypsin in serum. Herein, a fluorescent and colorimetric dual-mode upconversion nanoparticle (UCNP) biosensor was used for the determination of heparin, protamine, and trypsin based on the oxidase-mimicking activity of Ce4+ and electrostatic control. The biosensor exhibited sensitive detection of heparin, protamine, and trypsin with low limits of detection (LODs) of 16 ng/mL, 87 ng/mL and 31 ng/mL, respectively. Furthermore, the designed biosensor could eliminate autofluorescence, which not only effectively increased the accuracy of the sensor but also provided a new sensing pathway for the detection of differently charged biotargets.


Subject(s)
Biosensing Techniques , Heparin , Protamines , Static Electricity , Trypsin , Protamines/chemistry , Protamines/metabolism , Biosensing Techniques/methods , Heparin/chemistry , Heparin/metabolism , Heparin/analysis , Trypsin/metabolism , Trypsin/chemistry , Nanoparticles/chemistry , Humans , Limit of Detection , Oxidoreductases/chemistry , Oxidoreductases/metabolism , Colorimetry/methods , Spectrometry, Fluorescence/methods
12.
Talanta ; 277: 126386, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38876027

ABSTRACT

The detection of trypsin and its inhibitors is important for both clinical diagnosis and disease treatment. Abnormal trypsin activity affects pancreatic function and leads to corresponding pathological changes in the body. Therefore, the study presented a riboflavin-induced photo-ATRP electrochemical assay of trypsin activity and its inhibitor, including detection of trypsin activity in real urine samples. Experiments were performed on indium tin oxide (ITO) electrodes modified with sulfhydryl groups of 3-mercaptopropionic acid, and target trypsin-specific cleavage of BSA-Au nanocluster (BSA-Au NCs) was followed by the modification of Au NCs to the electrodes using Au-S. The Au NCs immobilized monodeoxy-monomercapto-ß-cyclodextrin@adamantan-2-amine (SH-ß-CD@2-NH2-Ada) host-guest inclusion complexes to the electrode surfaces via Au-S. In a two-component photo-initiator system consisting of riboflavin as an initiator and ascorbic acid (AA) as a mild reducing agent under mild blue light radiation, a large number of electroactive substances were grafted onto the electrode surface to generate electrochemical signals. In addition, we have successfully realized the detection of clinical drug inhibitors of trypsin. The detection limit of the system is as low as 0.0024 ng/mL, which much littler than the average standard of trypsin in the patient's urine or serum. It's worth noting that this work will provide researchers with a different route to design electrochemical sensors based on non-covalent recognition strategies.


Subject(s)
Electrochemical Techniques , Electrodes , Gold , Riboflavin , Trypsin , Riboflavin/chemistry , Riboflavin/urine , Trypsin/metabolism , Trypsin/chemistry , Humans , Gold/chemistry , Biomarkers/urine , Biomarkers/blood , Metal Nanoparticles/chemistry , Photochemical Processes , Limit of Detection , Serum Albumin, Bovine/chemistry , Tin Compounds/chemistry , Trypsin Inhibitors/chemistry , Trypsin Inhibitors/pharmacology , Trypsin Inhibitors/urine
13.
J Proteome Res ; 23(7): 2386-2396, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38900499

ABSTRACT

Tyrosine sulfation, an understudied but crucial post-translational modification, cannot be directly detected in conventional nanoflow liquid chromatography-tandem mass spectrometry (nanoLC-MS/MS) due to the extreme sulfate lability. Here, we report the detection of sulfate-retaining fragments from LC-electron capture dissociation (ECD) and nanoLC-electron transfer higher energy collision dissociation (EThcD). Sulfopeptide candidates were identified by Proteome Discoverer and MSFragger analysis of nanoLC-HCD MS/MS data and added to inclusion lists for LC-ECD or nanoLC-EThcD MS/MS. When this approach failed, targeted LC-ECD with fixed m/z isolation windows was performed. For the plasma protein fibrinogen, the known pyroglutamylated sulfopeptide QFPTDYDEGQDDRPK from the beta chain N-terminus was identified despite a complete lack of sulfate-containing fragment ions. The peptide QVGVEHHVEIEYD from the gamma-B chain C-terminus was also identified as sulfated or phosphorylated. This sulfopeptide is not annotated in Uniprot but was previously reported. MSFragger further identified a cysteine-containing peptide from the middle of the gamma chain as sulfated and deamidated. NanoLC-EThcD and LC-ECD MS/MS confirmed the two former sulfopeptides via sulfate-retaining fragment ions, whereas an unexpected fragmentation pattern was observed for the third sulfopeptide candidate. Manual interpretation of the LC-ECD spectrum revealed two additional isobaric identifications: a trisulfide-linked cysteinyl-glycine or a carbamidomethyl-dithiothreiotol covalent adduct. Synthesis of such adducts confirmed the latter identity.


Subject(s)
Fibrinogen , Tandem Mass Spectrometry , Tyrosine , Tyrosine/chemistry , Tyrosine/analogs & derivatives , Tandem Mass Spectrometry/methods , Fibrinogen/chemistry , Fibrinogen/metabolism , Chromatography, Liquid/methods , Humans , Protein Processing, Post-Translational , Trypsin/chemistry , Trypsin/metabolism , Sulfates/chemistry , Amino Acid Sequence , Peptides/chemistry , Peptides/analysis , Electrons
14.
Int J Mol Sci ; 25(11)2024 May 21.
Article in English | MEDLINE | ID: mdl-38891766

ABSTRACT

Despite the high quality of soybean protein, raw soybeans and soybean meal cannot be directly included in animal feed mixtures due to the presence of Kunitz (KTi) and Bowman-Birk protease inhibitors (BBis), which reduces animal productivity. Heat treatment can substantially inactivate trypsin and chymotrypsin inhibitors (BBis), but such treatment is energy-intensive, adds expense, and negatively impacts the quality of seed proteins. As an alternative approach, we have employed CRISPR/Cas9 gene editing to create mutations in BBi genes to drastically lower the protease inhibitor content in soybean seed. Agrobacterium-mediated transformation was used to generate several stable transgenic soybean events. These independent CRISPR/Cas9 events were examined in comparison to wild-type plants using Sanger sequencing, proteomic analysis, trypsin/chymotrypsin inhibitor activity assays, and qRT-PCR. Collectively, our results demonstrate the creation of an allelic series of loss-of-function mutations affecting the major BBi gene in soybean. Mutations in two of the highly expressed seed-specific BBi genes lead to substantial reductions in both trypsin and chymotrypsin inhibitor activities.


Subject(s)
Gene Editing , Glycine max , Trypsin Inhibitor, Bowman-Birk Soybean , Chymotrypsin/metabolism , Chymotrypsin/genetics , CRISPR-Cas Systems , Gene Editing/methods , Glycine max/genetics , Glycine max/metabolism , Mutation , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified/genetics , Seeds/genetics , Seeds/metabolism , Trypsin/metabolism , Trypsin/genetics , Trypsin/chemistry , Trypsin Inhibitor, Bowman-Birk Soybean/metabolism , Trypsin Inhibitor, Bowman-Birk Soybean/genetics , Trypsin Inhibitors/metabolism
15.
Am J Vet Res ; 85(7)2024 Jul 01.
Article in English | MEDLINE | ID: mdl-38729202

ABSTRACT

OBJECTIVE: Assess markers for pancreatic function and gastrointestinal malabsorption in African painted dogs (Lycaon pictus), including canine trypsin-like immunoreactivity (cTLI), canine pancreatic lipase immunoreactivity (cPLI), cobalamin, and folate at one North American facility. ANIMALS: 15 healthy African painted dogs held at one institution were sampled during routine health examinations. METHODS: Blood was collected at routine health examinations, and serum was separated and stored until testing. Serum was analyzed for cTLI, cPLI, cobalamin, and folate. The results were evaluated for correlation to sex, age, and storage time of samples. RESULTS: All individuals had cTLI and folate levels below normal reference ranges for domestic dogs (< 5.0 µg/L and < 7.7 µg/L, respectively). Cobalamin values were within or above reported domestic dog ranges, and cPLI values were within range as well. No analytes were significantly influenced by sex or time in storage, while cTLI was positively correlated with age. CLINICAL RELEVANCE: cTLI and folate did not fall within normal domestic canid reference ranges in this population of healthy African painted dogs. Clinical interpretation of these values based on domestic canid recommendations would indicate clinical disease, which was not apparent in this population. Analytes for pancreatic function and malabsorption or gastrointestinal indicators, including cTLI, cPLI, and folate, in African painted dogs should be interpreted with caution when using domestic dog references ranges.


Subject(s)
Animals, Zoo , Folic Acid , Lipase , Vitamin B 12 , Animals , Male , Lipase/blood , Lipase/metabolism , Female , Vitamin B 12/blood , Folic Acid/blood , Canidae , Reference Values , Trypsin/metabolism , Trypsin/blood , Pancreas/enzymology
16.
Org Biomol Chem ; 22(21): 4243-4248, 2024 05 29.
Article in English | MEDLINE | ID: mdl-38712975

ABSTRACT

Protamine-mediated micellar aggregates, featuring an AIE-based fluorescent sensor, facilitate efficient detection of trypsin activity. This method enables the detection of trypsin at exceptionally low concentrations (0.01-0.1 µg mL-1) in urine, demonstrating its potential for early clinical diagnosis of trypsin-related pancreatic diseases.


Subject(s)
Fluorescent Dyes , Micelles , Pancreatic Diseases , Trypsin , Trypsin/metabolism , Trypsin/urine , Fluorescent Dyes/chemistry , Fluorescent Dyes/chemical synthesis , Humans , Pancreatic Diseases/diagnosis , Spectrometry, Fluorescence , Protamines/analysis
17.
Spectrochim Acta A Mol Biomol Spectrosc ; 318: 124517, 2024 Oct 05.
Article in English | MEDLINE | ID: mdl-38801790

ABSTRACT

The effects of common migration substances in milk packaging on digestive protease were studied. We choose the common migrants found in eight types of multi-layer composite milk packaging. Enzyme activity experiments revealed that pepsin activity decreased by approximately 18 % at 500 µg/mL of stearic acid and stearamide treatment, while trypsin activity decreased by approximately 18 % only by stearic acid treatment (500 µg/mL). Subsequently, fluorescence spectroscopy, circular dichroism spectroscopy, and molecular docking technology were employed to investigate the inhibition mechanism of protease activity by migrating substances in three systems: stearic acid-trypsin, stearic acid-pepsin, and stearamide-pepsin. Results showed that the inhibitory effect of stearic acid on trypsin is a reversible mixed inhibition, whereas the inhibitory effects of stearic acid and stearamide on pepsin are non-competitive. In all three systems, ΔH < 0, ΔS < 0, and ΔG < 0, indicating the binding process between the migrant and the protease is a spontaneous exothermic process primarily driven by hydrogen bonding and van der Waals forces. In addition, their binding constants are all around 104 L/moL, indicating that there are moderate binding affinities exist between migrants and proteases. The binding process results in the quenching of the protease's endogenous fluorescence and induces alterations in the enzyme's secondary structure. Synchronized fluorescence spectroscopy showed that stearic acid enhanced the hydrophobicity near the Tyr residue of trypsin. The molecular docking results indicated that the binding affinity of stearic acid-trypsin, stearic acid-pepsin, and stearamide-pepsin was -22.51 kJ/mol, -12.35 kJ/mol, -19.28 kJ/mol respectively, which consistent with the trend in the enzyme activity results. This study can provide references for the selection of milk packaging materials and the use of processing additives, ensuring food health and safety.


Subject(s)
Food Packaging , Milk , Molecular Docking Simulation , Spectrometry, Fluorescence , Trypsin , Animals , Milk/chemistry , Trypsin/metabolism , Trypsin/chemistry , Stearic Acids/chemistry , Stearic Acids/metabolism , Pepsin A/metabolism , Pepsin A/chemistry , Circular Dichroism , Peptide Hydrolases/metabolism , Peptide Hydrolases/chemistry , Thermodynamics
18.
Food Chem ; 452: 139567, 2024 Sep 15.
Article in English | MEDLINE | ID: mdl-38718456

ABSTRACT

In this study, a hydroxyl radical oxidation system was established to simulate the oxidation process in fermented meat products. This system was employed to examine the structural changes in myofibrillar proteins (MPs) resulting from tryptic hydrolysis after a hydroxyl radical oxidative regime. The effect of these changes on the ability of MPs to bind selected aldehydes (3-methyl butanal, pentanal, hexanal, and heptanal) was also investigated. Moderate oxidation (H2O2 ≤ 1.0 mM) unfolded the structure of MPs, facilitating trypsin-mediated hydrolysis and increasing their binding capacity for the four selected aldehydes. However, excessive oxidation (H2O2 ≥ 2.5 mM) led to cross-linking and aggregation of MPs, inhibiting trypsin-mediated hydrolysis. The oxidised MPs had the best binding capacity for heptanal. The interaction of the oxidised trypsin-hydrolysed MPs with heptanal was driven by hydrophobic interactions. The binding of heptanal affected the structure of the oxidised trypsin-hydrolysed MPs and reduced their α-helix content.


Subject(s)
Aldehydes , Hydroxyl Radical , Oxidative Stress , Hydroxyl Radical/chemistry , Hydroxyl Radical/metabolism , Aldehydes/chemistry , Aldehydes/metabolism , Hydrolysis , Animals , Muscle Proteins/chemistry , Muscle Proteins/metabolism , Oxidation-Reduction , Myofibrils/chemistry , Myofibrils/metabolism , Trypsin/chemistry , Trypsin/metabolism , Swine , Protein Binding , Meat Products/analysis
19.
J Nanobiotechnology ; 22(1): 216, 2024 May 02.
Article in English | MEDLINE | ID: mdl-38698399

ABSTRACT

The enhanced permeability and retention (EPR) effect has become the guiding principle for nanomedicine against cancer for a long time. However, several biological barriers severely resist therapeutic agents' penetration and retention into the deep tumor tissues, resulting in poor EPR effect and high tumor mortality. Inspired by lava, we proposed a proteolytic enzyme therapy to improve the tumor distribution and penetration of nanomedicine. A trypsin-crosslinked hydrogel (Trypsin@PSA Gel) was developed to maintain trypsin's activity. The hydrogel postponed trypsin's self-degradation and sustained the release. Trypsin promoted the cellular uptake of nanoformulations in breast cancer cells, enhanced the penetration through endothelial cells, and degraded total and membrane proteins. Proteomic analysis reveals that trypsin affected ECM components and down-regulated multiple pathways associated with cancer progression. Intratumoral injection of Trypsin@PSA Gel significantly increased the distribution of liposomes in tumors and reduced tumor vasculature. Combination treatment with intravenous injection of gambogic acid-loaded liposomes and intratumoral injection of Trypsin@PSA Gel inhibited tumor growth. The current study provides one of the first investigations into the enhanced tumor distribution of liposomes induced by a novel proteolytic enzyme therapy.


Subject(s)
Hydrogels , Liposomes , Polyethylene Glycols , Trypsin , Xanthones , Liposomes/chemistry , Animals , Polyethylene Glycols/chemistry , Hydrogels/chemistry , Humans , Trypsin/metabolism , Trypsin/chemistry , Female , Mice , Cell Line, Tumor , Mice, Inbred BALB C , Breast Neoplasms/drug therapy , Proteolysis
20.
Sci Rep ; 14(1): 12383, 2024 05 29.
Article in English | MEDLINE | ID: mdl-38811772

ABSTRACT

Mesotrypsin, encoded by the PRSS3 gene, is a distinctive trypsin isoform renowned for its exceptional resistance to traditional trypsin inhibitors and unique substrate specificity. Within the skin epidermis, this protein primarily expresses in the upper layers of the stratified epidermis and plays a crucial role in processing pro-filaggrin (Pro-FLG). Although prior studies have partially elucidated its functions using primary cultured keratinocytes, challenges persist due to these cells' differentiation-activated cell death program. In the present study, HaCaT keratinocytes, characterized by minimal endogenous mesotrypsin expression and sustained proliferation in differentiated states, were utilized to further scrutinize the function of mesotrypsin. Despite the ready degradation of the intact form of active mesotrypsin in these cells, fusion with Venus, flanked by a peptide linker, enables evasion from the protein elimination machinery, thus facilitating activation of the Pro-FLG processing system. Inducing Venus-mesotrypsin expression in the cells resulted in a flattened phenotype and reduced proliferative capacity. Moreover, these cells displayed altered F-actin assembly, enhanced E-cadherin adhesive activity, and facilitated tight junction formation without overtly influencing epidermal differentiation. These findings underscore mesotrypsin's potentially pivotal role in shaping the characteristic cellular morphology of upper epidermal layers.


Subject(s)
Cadherins , Cell Differentiation , Cell Proliferation , Filaggrin Proteins , Keratinocytes , Trypsin , Keratinocytes/metabolism , Humans , Trypsin/metabolism , Filaggrin Proteins/metabolism , Cadherins/metabolism , Epidermis/metabolism , Actins/metabolism , HaCaT Cells , Tight Junctions/metabolism , Cell Adhesion , Cell Line , Epidermal Cells/metabolism
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