Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 29
Filter
Add more filters










Publication year range
1.
J Appl Microbiol ; 127(6): 1665-1676, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31461193

ABSTRACT

AIMS: A mathematical model of the nonribosomal synthesis of tyrocidines and analogues by Brevibacillus parabrevis was constructed using a competitive binding mechanism (CBM) for the incorporation of the three variable aromatic amino acid (Aaa) residues in their sequence. These antimicrobial peptides have a conserved structure (D-Phe1 -Pro2 -Aaa3 -D-Aaa4 -Asn5 -Gln6 -Aaa7 -Val8 -Orn9 -Leu10 ), apart from the Aaa in positions 3, 4 and 7 containing either Phe, Trp or Tyr. METHODS AND RESULTS: Ultra-performance liquid chromatography linked mass spectrometry was used to profile peptides from extracts of cultures grown in media with various Phe : Trp ratios. The CBM model describes the production of peptides as a function of growth medium Aaa concentration. The model accounts for variable Aaa incorporation by simultaneously considering the influence of maximal incorporation rate and cooperativity, despite similar KM' s of synthetase modules. CONCLUSIONS: Our CBM model can be utilized to predict the Aaa composition of produced peptides from the concentration of Aaas in the growth medium. SIGNIFICANCE AND IMPACT OF THE STUDY: Subtly exploiting the inherent promiscuity of the nontemplate coded peptide synthesis allows for external control of peptide identity, without using genetic manipulation. Such versatility is exploitable in the production of targeted peptide complexes and rare peptides where production processes are reliant on nonribosomal synthesis.


Subject(s)
Amino Acids, Aromatic/metabolism , Anti-Bacterial Agents/biosynthesis , Brevibacillus/metabolism , Peptides, Cyclic/biosynthesis , Tyrocidine/biosynthesis , Binding, Competitive , Chromatography, Liquid , Mass Spectrometry , Models, Theoretical , Peptide Biosynthesis, Nucleic Acid-Independent
2.
J Pept Sci ; 25(5): e3163, 2019 May.
Article in English | MEDLINE | ID: mdl-30884009

ABSTRACT

Tyrocidines are a family of cyclic decapeptides produced by the soil bacterium, Brevibacillus parabrevis. These antibiotic peptides can be used to prevent infections in agriculture and food industry but also to prepare antimicrobial lozenges, creams, and dressings for medical applications. It has been observed that the tyrocidines interact with saccharides such as cellulose from their soil environment, as well as sugars in culture media and glycans in fungal cell walls. Here, we investigated the interactions of tyrocidines with glucose, sucrose, and cellotetraose (as cellulose model) in a quantitative fashion utilising CD and NMR spectroscopy. The CD and NMR spectra of tyrocidine A (TrcA) were analysed as a function of solvent composition, and the spectral properties agree with the formation of oligomeric structures that are governed by ß-sheet secondary structures once the acetonitrile content of the solvent is increased. Saccharides seem to also induce TrcA spectral changes reverting those induced by organic solvents. The CD spectral changes of TrcA in the presence of glucose agree with new ordered H-bonding, possibly ß-sheet structures. The amides involved in intramolecular H-bonding remained largely unaffected by the environmental changes. In contrast, amides exposed to the exterior and/or involved in TrcA intermolecular association show the largest 1 H chemical shift changes. CD and NMR spectroscopic investigations correlated well with TrcA-glucose interactions characterized by a dissociation constant around 200 µM. Interestingly, the association of cellotetraose corresponds closely to the additive effect from four glucose moieties, while a much higher dissociation constant was observed for sucrose. Similar trends to TrcA for binding to the three saccharides were observed for the analogous tyrocidines, tyrocidine B, and tyrocidine C. These results therefore indicate that the tyrocidine interactions with the glucose monosaccharide unit are fairly specific and reversible.


Subject(s)
Brevibacillus/chemistry , Oligosaccharides/chemistry , Tyrocidine/chemistry , Brevibacillus/metabolism , Circular Dichroism , Mass Spectrometry , Models, Molecular , Nuclear Magnetic Resonance, Biomolecular , Protein Conformation , Tyrocidine/biosynthesis , Tyrocidine/isolation & purification
3.
Angew Chem Int Ed Engl ; 52(28): 7098-124, 2013 Jul 08.
Article in English | MEDLINE | ID: mdl-23729217

ABSTRACT

Freestanding nonproteinogenic amino acids have long been recognized for their antimetabolite properties and tendency to be uncovered to reactive functionalities by the catalytic action of target enzymes. By installing them regiospecifically into biogenic peptides and proteins, it may be possible to usher a new era at the interface between small molecule and large molecule medicinal chemistry. Site-selective protein functionalization offers uniquely attractive strategies for posttranslational modification of proteins. Last, but not least, many of the amino acids not selected by nature for protein incorporation offer rich architectural possibilities in the context of ribosomally derived polypeptides. This Review summarizes the biosynthetic routes to and metabolic logic for the major classes of the noncanonical amino acid building blocks that end up in both nonribosomal peptide frameworks and in hybrid nonribosomal peptide-polyketide scaffolds.


Subject(s)
Amino Acids/chemistry , Peptides/chemistry , Polyketides/chemistry , Amino Acids/biosynthesis , Macrocyclic Compounds/chemistry , Macrocyclic Compounds/metabolism , Peptides/metabolism , Polyketides/metabolism , Proteins/chemistry , Proteins/metabolism , Sirolimus/chemistry , Sirolimus/metabolism , Tyrocidine/biosynthesis , Tyrocidine/chemistry
4.
Proc Natl Acad Sci U S A ; 101(44): 15585-90, 2004 Nov 02.
Article in English | MEDLINE | ID: mdl-15498872

ABSTRACT

Nonribosomal peptide synthetases (NRPSs) catalyze the formation of structurally diverse and biologically important peptides. Given their modular organization, NRPSs provide an enormous potential for biocombinatorial approaches to generate novel bioactive compounds. Crucial for the exploitation of this potential is a profound knowledge of the intermolecular communication between partner NRPSs. The overall goal of this study was to understand the basis of protein-protein communication that facilitates the selective interaction in these multienzyme complexes. On this account, we studied the relevance of short regions at the termini of the NRPSs tyrocidine (Tyc) synthetases TycA, TycB, and TycC, constituting the Tyc biosynthetic template. In vitro and in vivo investigations of C-terminal deletion mutants of the initiation module TycA provided evidence for the existence and impact of short communication-mediating (COM) domains. Their decisive role in protein-protein recognition was subsequently proven by means of COM domain-swapping experiments. Substitution of the terminal COM domains between the donor modules TycA and TycB3, as well as between the acceptor modules TycB1 and TycC1, clearly demonstrated that matching pairs of COM domains are both necessary and sufficient for the establishment of communication between partner NRPSs in trans. These results corroborated the generality of COM domains, which were subsequently exploited to induce crosstalk, even between NRPSs derived from different biosynthetic systems. In conclusion, COM domains represent interesting tools for biocombinatorial approaches, which, for example, could be used for the generation of innovative natural product derivatives.


Subject(s)
Peptide Synthases/chemistry , Peptide Synthases/metabolism , Amino Acid Sequence , Anti-Bacterial Agents/biosynthesis , Bacillus/enzymology , Bacillus/genetics , Escherichia coli/genetics , Molecular Sequence Data , Multienzyme Complexes/chemistry , Multienzyme Complexes/genetics , Multienzyme Complexes/metabolism , Peptide Biosynthesis, Nucleic Acid-Independent , Peptide Synthases/genetics , Plasmids/genetics , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Deletion , Sequence Homology, Amino Acid , Stereoisomerism , Tyrocidine/biosynthesis
5.
Appl Microbiol Biotechnol ; 64(2): 275-83, 2004 Apr.
Article in English | MEDLINE | ID: mdl-12898064

ABSTRACT

Biofilms were used to produce gramicidin S (a cyclic decapeptide) to inhibit corrosion-causing, sulfate-reducing bacteria (SRB). In laboratory studies these biofilms protected mild steel 1010 continuously from corrosion in the aggressive, cooling service water of the AmerGen Three-Mile-Island (TMI) nuclear plant, which was augmented with reference SRB. The growth of both reference SRB (Gram-positive Desulfosporosinus orientis and Gram-negative Desulfovibrio vulgaris) was shown to be inhibited by supernatants of the gramicidin-S-producing bacteria as well as by purified gramicidin S. Electrochemical impedance spectroscopy and mass loss measurements showed that the protective biofilms decreased the corrosion rate of mild steel by 2- to 10-fold when challenged with the natural SRB of the TMI process water supplemented with D. orientis or D. vulgaris. The relative corrosion inhibition efficiency was 50-90% in continuous reactors, compared to a biofilm control which did not produce the antimicrobial gramicidin S. Scanning electron microscope and reactor images also revealed that SRB attack was thwarted by protective biofilms that secrete gramicidin S. A consortium of beneficial bacteria (GGPST consortium, producing gramicidin S and other antimicrobials) also protected the mild steel.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Antibiosis , Bacteria/growth & development , Biofilms/growth & development , Steel , Sulfur-Reducing Bacteria/growth & development , Anti-Bacterial Agents/pharmacology , Bacteria/metabolism , Bacterial Proteins/metabolism , Bacterial Proteins/pharmacology , Bacteriocins , Biotechnology/methods , Corrosion , Desulfovibrio/drug effects , Desulfovibrio/growth & development , Gramicidin/biosynthesis , Gramicidin/pharmacology , Industrial Microbiology/methods , Oxidation-Reduction , Peptides/metabolism , Peptides/pharmacology , Peptococcaceae/drug effects , Peptococcaceae/growth & development , Polymyxins/biosynthesis , Polymyxins/pharmacology , Steel/chemistry , Sulfur-Reducing Bacteria/drug effects , Tyrocidine/biosynthesis , Tyrocidine/pharmacology , Water Microbiology
6.
Biochemistry ; 42(41): 12095-104, 2003 Oct 21.
Article in English | MEDLINE | ID: mdl-14556641

ABSTRACT

Nonribosomal peptides (NRP) such as the antibiotic tyrocidine have D-amino acids, introduced by epimerase (E) domains embedded within modules of the enzymatic assembly lines. We predict that the peptide bond-forming condensation (C) domains immediately downstream of E domains are D-specific for the peptidyl donor and L-specific for the aminoacyl acceptor ((D)C(L)). To validate this prediction and establish that the C(5) domain of tyrocidine synthetase is indeed (D)C(L), the apoT (thiolation) forms of module 4 (TycB(3) AT(4)E) and module 5 (TycC(1) C(5)AT(5)) were expressed. T(5) was posttranslationally primed with CoASH to introduce the HS-pantetheinyl group and autoaminoacylated with radiolabeled L-Asn* or L-Asp*. Alternate donor substrates were introduced by priming apo AT(4)E with synthetically prepared tetrapeptidyl-CoA's differing in the chirality of Phe-4, D-Phe-L-Pro-L-Phe-L-Phe-CoA, and D-Phe-L-Pro-L-Phe-D-Phe-CoA. The tetrapeptidyl-S-T(4) and L-Asp-S-T(5) were studied for peptide bond formation and chain translocation by C(5) to yield pentapeptidyl-S-T(5), whose chirality (D-L-L-D-L- vs D-L-L-L-L-) was assayed by thioester cleavage and chiral chromatography of the released pentapeptides. Only the D-Phe-4 pentapeptidyl-S-T(5) was generated, implying that only D-L-L-D-S-T(4) was utilized, proving C(5) is indeed a (D)C(L) catalyst. Furthermore, a mutant with an inactive E domain transferred tetrapeptide only when loaded with D-Phe-4 tetrapeptidyl donor, not L-Phe-4, confirming that in the wild-type assembly line C(5) only transfers D-L-L-L-tetrapeptidyl-S-T(4) after in situ epimerization by the E domain. These results contrast the observation that C(5) can make both L-Phe-L-Asn and D-Phe-L-Asn when assayed with Phe as the donor substrate. Hence, utilizing an aminoacyl-S-T(4) versus the natural peptidyl-S-T(4) donor produced misleading information regarding the specificity of the condensation domain.


Subject(s)
Oligopeptides/chemistry , Peptide Synthases/chemistry , Tyrocidine/biosynthesis , Tyrocidine/chemistry , Amino Acid Substitution/genetics , Aminoacylation/genetics , Binding Sites/genetics , Coenzyme A/chemistry , Dipeptides/chemistry , Oligopeptides/genetics , Peptide Synthases/genetics , Protein Processing, Post-Translational/genetics , Protein Structure, Tertiary/genetics , Racemases and Epimerases/chemistry , Stereoisomerism , Substrate Specificity
7.
J Biomol NMR ; 26(1): 1-11, 2003 May.
Article in English | MEDLINE | ID: mdl-12766398

ABSTRACT

The three-dimensional structure of bilayer-associated gramicidin A is available from a structural data base. This and related peptides are, therefore, ideal model compounds to use during the implementation and development of new NMR techniques for the structural investigations of membrane proteins. As these methods rely on the isotopic labelling of single, selected or all sites, we have, investigated and optimised biochemical protocols using different strains of the Gram-positive bacterium Bacillus brevis. With newly developed schemes for isotopic labelling large amounts of gramicidin and tyrocidin enriched with stable isotopes such as (15)N or (15)N/(13)C have been obtained at low cost. A variety of analytical and spectroscopic techniques, including HPLC, mass spectrometry and NMR spectroscopy are used to characterise the resulting products.


Subject(s)
Bacillus/metabolism , Gramicidin/biosynthesis , Tyrocidine/biosynthesis , Amino Acid Sequence , Carbon Isotopes , Chromatography, High Pressure Liquid/methods , Gramicidin/chemistry , Magnetic Resonance Spectroscopy/methods , Mass Spectrometry , Molecular Sequence Data , Nitrogen Isotopes , Tyrocidine/chemistry
8.
Biochemistry ; 42(17): 5114-24, 2003 May 06.
Article in English | MEDLINE | ID: mdl-12718555

ABSTRACT

We present a systematic and quantitative study of the protein-protein recognition between the three tyrocidine synthetases TycA, TycB, and TycC investigated with two artificial in trans assay systems, which had been previously developed: the "DKP assay system" for the interaction of TycA with TycB and the "L/D-Phe-L-Asn assay system" for the interaction of TycB with TycC. TycA-A(Phe)TE and TycB(3)-A(Phe)TE, which are used as donor enzymes, both provide D-Phe-S-Ppant, so that no substrate specificities interfered with the quantification of protein-protein recognition. We tested all donor/acceptor enzyme combinations between the two artificial assay systems for product formation activities as well as two hybrid enzymes, where the E-domains of TycA and TycB(3) had been exchanged against each other. Furthermore, four donor/acceptor protein fusions were constructed on gene level, resulting in dimodular proteins. We were able to show that the E-domains mediate protein-protein recognition in trans. Product formation of the different donor assayed with the two acceptor enzymes TycB(1)-CA(Pro)T and TycC(1)-CA(Asn)T/Te in trans was only obtained if the donor enzyme harbored the cognate E-domain. Interestingly, all in cis fusions (dimodular proteins) were active, giving strong evidence that unnatural protein-protein interactions can be "forced" by fusion of the distinct enzymes. Finally, we were able to detect product formation in the "DKP system" with engineered hybrid proteins where the A-domain of TycA had been exchanged against the isoleucine-activating A-domain of BacA(1) and the valine-activating A-domain of TycC(4), respectively. All of these findings are of high relevance for future NRPS engineering approaches.


Subject(s)
Peptide Synthases/metabolism , Tyrocidine/biosynthesis , Anti-Bacterial Agents/biosynthesis , Anti-Bacterial Agents/chemistry , Base Sequence , DNA Primers , Kinetics , Molecular Conformation , Peptide Synthases/genetics , Phosphorylation , Recombinant Proteins/metabolism , Tyrocidine/chemistry
9.
Nature ; 418(6898): 658-61, 2002 Aug 08.
Article in English | MEDLINE | ID: mdl-12167866

ABSTRACT

Molecules in nature are often brought to a bioactive conformation by ring formation (macrocyclization). A recurrent theme in the enzymatic synthesis of macrocyclic compounds by non-ribosomal and polyketide synthetases is the tethering of activated linear intermediates through thioester linkages to carrier proteins, in a natural analogy to solid-phase synthesis. A terminal thioesterase domain of the synthetase catalyses release from the tether and cyclization. Here we show that an isolated thioesterase can catalyse the cyclization of linear peptides immobilized on a solid-phase support modified with a biomimetic linker, offering the possibility of merging natural-product biosynthesis with combinatorial solid-phase chemistry. Starting from the cyclic decapeptide antibiotic tyrocidine A, this chemoenzymatic approach allows us to diversify the linear peptide both to probe the enzymology of the macrocyclizing enzyme, TycC thioesterase, and to create a library of cyclic peptide antibiotic products. We have used this method to reveal natural-product analogues of potential therapeutic utility; these compounds have an increased preference for bacterial over eukaryotic membranes and an improved spectrum of activity against some common bacterial pathogens.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Anti-Bacterial Agents/chemical synthesis , Peptides, Cyclic/biosynthesis , Peptides, Cyclic/chemical synthesis , Amino Acid Sequence , Anti-Bacterial Agents/pharmacology , Bacteria/drug effects , Biological Products/biosynthesis , Biological Products/chemical synthesis , Biological Products/pharmacology , Catalysis , Cyclization , Erythrocytes/drug effects , Humans , Hydrolysis , Microbial Sensitivity Tests , Molecular Mimicry , Molecular Sequence Data , Peptides, Cyclic/pharmacology , Substrate Specificity , Thiolester Hydrolases/metabolism , Tyrocidine/analogs & derivatives , Tyrocidine/biosynthesis , Tyrocidine/chemical synthesis , Tyrocidine/pharmacology
10.
Eur J Biochem ; 269(2): 620-9, 2002 Jan.
Article in English | MEDLINE | ID: mdl-11856321

ABSTRACT

The initial condensation event in the nonribosomal biosynthesis of the peptide antibiotics gramicidin S and tyrocidine A takes place between a phenylalanine activating racemase GrsA/TycA and the first proline-activating module of GrsB/TycB. Recently we established a minimal in vitro model system for NRPS with recombinant His6-tagged GrsA (GrsAPhe-ATE; 127 kDa) and TycB1 (TycB1Pro-CAT; 120 kDa) and demonstrated the catalytic function of the C-domain in TycB1Pro-CAT to form a peptide bond between phenylalanine and proline during diketopiperazine formation (DKP). In this work we took advantage of this system to identify catalytically important residues in the C-domain of TycB1Pro-CAT using site-directed mutagenesis and peptide mapping. Mutations in TycB1Pro-CAT of 10 strictly conserved residues among 80 other C-domains with potential catalytic function, revealed that only R62A, H147R and D151N are impaired in peptide-bond formation. All other mutations led to either unaffected (Q19A, C154A/S, Y166F/W and R284A) or insoluble proteins (H146A, R67A and W202L). Although 100 nm of the serine protease inhibitors N-alpha-tosyl-l-phenylalanylchloromethane or phenylmethanesulfonyl fluoride completely abolished DKP synthesis, no covalently bound inhibitor derivatives in the C-domain could be identified by peptide mapping using HPLC-MS. Though the results do not reveal a particular mechanism for the C-domain, they exhibit a possible way of catalysis analogous to the functionally related enzymes chloramphenicol acetyltransferase and dihydrolipoyl transacetylase. Based on this, we propose a mechanism in which one catalytic residue (H147) and two other structural residues (R62 and D151) are involved in amino-acid condensation.


Subject(s)
Gramicidin/biosynthesis , Tyrocidine/biosynthesis , Amino Acid Isomerases/metabolism , Amino Acid Sequence , Base Sequence , Chromatography, High Pressure Liquid , Cloning, Molecular , DNA Primers , Gramicidin/chemistry , Mass Spectrometry , Molecular Sequence Data , Mutagenesis, Site-Directed , Peptide Synthases/metabolism , Tyrocidine/chemistry
11.
Proc Natl Acad Sci U S A ; 99(3): 1247-52, 2002 Feb 05.
Article in English | MEDLINE | ID: mdl-11805307

ABSTRACT

Nonribosomal peptide synthetases responsible for the production of macrocyclic compounds often use their C-terminal thioesterase (TE) domain for enzymatic cyclization of a linear precursor. The excised TE domain from the nonribosomal peptide synthetase responsible for the production of the cyclic decapeptide tyrocidine A, TycC TE, retains autonomous ability to catalyze head-to-tail macrocyclization of a linear peptide thioester with the native sequence of tyrocidine A and can additionally cyclize peptide analogs that incorporate limited alterations in the peptide sequence. Here we show that TycC TE can catalyze macrocyclization of peptide substrates that are dramatically different from the native tyrocidine linear precursor. Several peptide thioesters that retain a limited number of elements of the native peptide sequence are shown to be substrates for TycC TE. These peptides were designed to integrate an Arg-Gly-Asp sequence that confers potential activity in the inhibition of ligand binding by integrin receptors. Although enzymatic hydrolysis of the peptide thioester substrates is preferred over cyclization, TycC TE can be used on a preparative scale to generate both linear and cyclic peptide products for functional characterization. The products are shown to be inhibitors of ligand binding by integrin receptors, with cyclization and N(alpha)-methylation being important contributors to the nanomolar potency of the best inhibitors of fibrinogen binding to alpha IIb beta 3 integrin. This study provides evidence for TycC TE as a versatile macrocyclization catalyst and raises the prospect of using TE catalysis for the generation of diverse macrocyclic peptide libraries that can be probed for novel biological function.


Subject(s)
Integrins/metabolism , Palmitoyl-CoA Hydrolase/metabolism , Peptide Synthases/metabolism , Peptides, Cyclic/biosynthesis , Amino Acid Sequence , Anti-Bacterial Agents/biosynthesis , Anti-Bacterial Agents/chemistry , Catalysis , Ligands , Oligopeptides , Palmitoyl-CoA Hydrolase/chemistry , Tyrocidine/biosynthesis , Tyrocidine/chemistry
12.
Proc Natl Acad Sci U S A ; 97(11): 5848-53, 2000 May 23.
Article in English | MEDLINE | ID: mdl-10811885

ABSTRACT

Nonribosomal peptide synthetases are modular enzymes that assemble peptides of diverse structures and important biological activities. Their modular organization provides a great potential for the rational design of novel compounds by recombination of the biosynthetic genes. Here we describe the extension of a dimodular system to trimodular ones based on whole-module fusion. The recombinant hybrid enzymes were purified to monitor product assembly in vitro. We started from the first two modules of tyrocidine synthetase, which catalyze the formation of the dipeptide dPhe-Pro, to construct such hybrid systems. Fusion of the second, proline-specific module with the ninth and tenth modules of the tyrocidine synthetases, specific for ornithine and leucine, respectively, resulted in dimodular hybrid enzymes exhibiting the combined substrate specificities. The thioesterase domain was fused to the terminal module. Upon incubation of these dimodular enzymes with the first tyrocidine module, TycA, incorporating dPhe, the predicted tripeptides dPhe-Pro-Orn and dPhe-Pro-Leu were obtained at rates of 0.15 min(-1) and 2.1 min(-1). The internal thioesterase domain was necessary and sufficient to release the products from the hybrid enzymes and thereby facilitate a catalytic turnover. Our approach of whole-module fusion is based on an improved definition of the fusion sites and overcomes the recently discovered editing function of the intrinsic condensation domains. The stepwise construction of hybrid peptide synthetases from catalytic subunits reinforces the inherent potential for the synthesis of novel, designed peptides.


Subject(s)
Peptide Synthases/chemistry , Protein Structure, Tertiary , Adenosine Triphosphate/metabolism , Amino Acid Sequence , Amino Acid Substitution , Catalysis , Genes, Synthetic , Mass Spectrometry , Molecular Sequence Data , Oligopeptides/metabolism , Peptide Synthases/genetics , Protein Structure, Tertiary/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Substrate Specificity , Tyrocidine/biosynthesis
13.
J Bacteriol ; 179(21): 6843-50, 1997 Nov.
Article in English | MEDLINE | ID: mdl-9352938

ABSTRACT

The cyclic decapeptide antibiotic tyrocidine is produced by Bacillus brevis ATCC 8185 on an enzyme complex comprising three peptide synthetases, TycA, TycB, and TycC (tyrocidine synthetases 1, 2, and 3), via the nonribosomal pathway. However, previous molecular characterization of the tyrocidine synthetase-encoding operon was restricted to tycA, the gene that encodes the first one-module-bearing peptide synthetase. Here, we report the cloning and sequencing of the entire tyrocidine biosynthesis operon (39.5 kb) containing the tycA, tycB, and tycC genes. As deduced from the sequence data, TycB (404,562 Da) consists of three modules, including an epimerization domain, whereas TycC (723,577 Da) is composed of six modules and harbors a putative thioesterase domain at its C-terminal end. Each module incorporates one amino acid into the peptide product and can be further subdivided into domains responsible for substrate adenylation, thiolation, condensation, and epimerization (optional). We defined, cloned, and expressed in Escherichia coli five internal adenylation domains of TycB and TycC. Soluble His6-tagged proteins, ranging from 536 to 559 amino acids, were affinity purified and found to be active by amino acid-dependent ATP-PPi exchange assay. The detected amino acid specificities of the investigated domains manifested the colinear arrangement of the peptide product with the respective module in the corresponding peptide synthetases and explain the production of the four known naturally occurring tyrocidine variants. The Km values of the investigated adenylation domains for their amino acid substrates were found to be comparable to those published for undissected wild-type enzymes. These findings strongly support the functional integrities of single domains within multifunctional peptide synthetases. Directly downstream of the 3' end of the tycC gene, and probably transcribed in the tyrocidine operon, two tandem ABC transporters, which may be involved in conferring resistance against tyrocidine, and a putative thioesterase were found.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Bacillus/genetics , Operon , Peptide Synthases/genetics , Tyrocidine/biosynthesis , ATP-Binding Cassette Transporters/genetics , Adenosine Monophosphate/metabolism , Binding Sites , Cloning, Molecular , Genes, Bacterial , Molecular Sequence Data , Sequence Analysis, DNA , Thiolester Hydrolases/genetics
14.
J Biochem ; 113(5): 637-41, 1993 May.
Article in English | MEDLINE | ID: mdl-7687994

ABSTRACT

Bacillus brevis (ATCC 8185) produces an antibiotic peptide, linear gramicidin, in the early stationary growth phase. Since we observed that preculture in milk medium is essential for production of the antibiotic in broth medium, we studied the role of the preculture in the antibiotic production. We found that addition of the supernatant of the precultured milk medium was sufficient to induce gramicidin production in broth medium. Fresh milk medium had no effect. The effector substance in the overnight cultured milk medium was labile at both acidic and alkaline pH and was destroyed by heat. We also found that addition of a protease (for example, bovine pancreas chymotrypsin or Streptomyces griseus protease) instead of the supernatant could induce the gramicidin production. Addition of Mn2+ was not required for the protease-induced production of gramicidin. It is known that B. brevis cells secrete protease into milk medium. But neither use of the protease-pretreated broth medium nor addition of casamino acids to broth medium induced gramicidin production. These results suggest that B. brevis cells secrete a factor for linear gramicidin production, that the inducing factor is protease and that the target of the protease is a substance(s) produced by the bacteria.


Subject(s)
Bacillus/metabolism , Chlorides , Endopeptidases/metabolism , Gramicidin/biosynthesis , Manganese Compounds , Tyrocidine/biosynthesis , Animals , Bacillus/drug effects , Chromatography, Thin Layer , Culture Media , Gramicidin/antagonists & inhibitors , Hydrogen-Ion Concentration , Manganese/pharmacology , Milk
15.
Mol Microbiol ; 7(5): 631-6, 1993 Mar.
Article in English | MEDLINE | ID: mdl-7682277

ABSTRACT

In Bacillus species, starvation leads to the activation of a number of processes that affect the ability to survive during periods of nutritional stress. Activities that are induced include the development of genetic competence, sporulation, the synthesis of degradative enzymes, motility, and antibiotic production. The genes that function in these processes are activated during the transition from exponential to stationary phase and are controlled by mechanisms that operate primarily at the level of transcription initiation. One class of genes functions in the synthesis of special metabolites such as the peptide antibiotics tyrocidine and gramicidin S as well as the cyclic lipopeptide surfactin. These genes include the grs and tyc operons in Bacillus brevis, which encode gramicidin S synthetase and tyrocidine synthetase, respectively, and the srfA operon of Bacillus subtilis which encodes the enzymes of the surfactin synthetase complex. Peptide antibiotic biosynthesis genes are regulated by factors as diverse as the early sporulation gene product Spo0A, the transition-state regulator AbrB, and gene products (ComA, ComP, and ComQ) required for the initiation of the competence developmental pathway.


Subject(s)
Amino Acid Isomerases/genetics , Bacillus/metabolism , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , DNA-Binding Proteins , Gene Expression Regulation, Bacterial , Gramicidin/biosynthesis , Membrane Proteins , Multienzyme Complexes/genetics , Peptide Synthases/genetics , Peptides, Cyclic , Transferases , Tyrocidine/biosynthesis , Amino Acid Isomerases/metabolism , Bacillus/genetics , Bacillus subtilis/genetics , Bacillus subtilis/metabolism , Bacterial Proteins/metabolism , Base Sequence , Enzyme Induction , Lipopeptides , Models, Biological , Molecular Sequence Data , Multienzyme Complexes/metabolism , Operon , Peptide Synthases/metabolism , Spores, Bacterial
16.
FEMS Microbiol Lett ; 54(1-3): 277-9, 1990 Jan 01.
Article in English | MEDLINE | ID: mdl-2157624

ABSTRACT

Bacillus brevis (ATCC 8185) produces an antibiotic peptide, tyrocidine. We found that adenosine or 5'-AMP suppressed the production of tyrocidine with half-maximum inhibition at 100-300 microM. This inhibition was specific to the production of tyrocidine since neither adenosine nor 5'-AMP showed any effect on bacterial growth. Cyclic nucleotides had no effect. These results suggest that adenosine, 5'-AMP or its metabolite was specifically involved in the regulation of tyrocidine production.


Subject(s)
Bacillus/drug effects , Purine Nucleotides/pharmacology , Tyrocidine/biosynthesis , Tyrothricin/biosynthesis , Adenosine/pharmacology , Adenosine Monophosphate/pharmacology , Bacillus/metabolism , Kinetics , Nucleotides, Cyclic/pharmacology
17.
Crit Rev Biotechnol ; 10(3): 223-40, 1990.
Article in English | MEDLINE | ID: mdl-1702690

ABSTRACT

Several species of the genus Bacillus produce peptide antibiotics which are synthesized either through a ribosomal or non-ribosomal mechanism. The antibiotics gramicidin, tyrocidine, and bacitracin are synthesized nonribosomally by the multienzyme thiotemplate mechanism. Surfactin and mycobacillin are also synthesized nonribosomally but by a mechanism that, apparently, is distinct from that of the multienzyme thiotemplate. Other antibiotics such as subtilin are gene encoded and are ribosomally synthesized. Molecular genetic and DNA sequence analysis have shown that biosynthesis genes for some antibiotics are clustered into polycistronic transcription units and are under the control of global regulatory systems that govern the expression of genes that are induced when Bacillus cells enter stationary phase of growth. Future experiments involving the molecular dissection of peptide antibiotic biosynthesis genes in Bacillus will be attempted in hopes of further examining the mechanism and regulation of antibiotic production.


Subject(s)
Anti-Bacterial Agents/biosynthesis , Bacillus/metabolism , Peptides, Cyclic , Amino Acid Sequence , Bacillus/genetics , Bacterial Proteins/biosynthesis , Base Sequence , Gramicidin/biosynthesis , Lipopeptides , Molecular Sequence Data , Mutation , Ribosomes/metabolism , Tyrocidine/biosynthesis
18.
Proc Natl Acad Sci U S A ; 86(21): 8457-61, 1989 Nov.
Article in English | MEDLINE | ID: mdl-2554317

ABSTRACT

The abrB gene of Bacillus subtilis is believed to encode a repressor that controls the expression of genes involved in starvation-induced processes such as sporulation and the production of antibiotics and degradative enzymes. Two such genes, spoVG, a sporulation gene of B. subtilis, and tycA, which encodes tyrocidine synthetase I of the tyrocidine biosynthetic pathway in Bacillus brevis, are negatively regulated by abrB in B. subtilis. To examine the role of abrB in the repression of gene transcription, the AbrB protein was purified and then tested for its ability to bind to spoVG and tycA promoter DNA. In a gel mobility shift experiment, AbrB was found to bind to a DNA fragment containing the sequence from -95 to +61 of spoVG. AbrB protein exhibited reduced affinity for DNA of two mutant forms of the spoVG promoter that had been shown to be insensitive to abrB-dependent repression in vivo. These studies showed that an upstream A + T-rich sequence from -37 to -95 was required for optimal AbrB binding. AbrB protein was also observed to bind to the tycA gene within a region between the transcription start site and the tycA coding sequence as well as to a region containing the putative tycA promoter. These findings reinforce the hypothesis that AbrB represses gene expression through its direct interaction with the transcription initiation regions of genes under its control.


Subject(s)
Bacillus subtilis/genetics , Bacterial Proteins/genetics , Gene Expression Regulation, Bacterial , Genes, Bacterial , Genes, Regulator , Repressor Proteins/genetics , Transcription Factors/genetics , Transcription, Genetic , Amino Acid Sequence , Bacillus subtilis/physiology , Bacterial Proteins/isolation & purification , Bacterial Proteins/metabolism , Base Sequence , Escherichia coli/genetics , Molecular Sequence Data , Peptide Synthases/genetics , Plasmids , Promoter Regions, Genetic , Spores, Bacterial , Tyrocidine/biosynthesis
19.
Arch Microbiol ; 143(3): 248-52, 1985 Dec.
Article in English | MEDLINE | ID: mdl-2420301

ABSTRACT

When Bacillus brevis ATCC 8185 was subjected to nutritional shiftdown from a rich medium to one completely devoid of a nitrogen source, sporulation could be stimulated by the addition of linear gramicidin. Gramicidin-induced sporulation occurred after a considerably longer lag period than the earlier described tyrocidine-induced process (Ristow and Paulus 1982) but involved similar associated biochemical changes, such as extracellular protease production, rapid incorporation of radioactive precursors into RNA, and dipicolinate synthesis. The increased incorporation of [3H]leucine into tyrocidine was a characteristic element in gramicidin-induced sporulation, not being observed when spore formation was accelerated by limited nitrogen supplementation. Nitrogen supplementation (0.02-0.01% nutrient broth) caused a slow and gradual increase in dipicolinate production, in contrast to the sudden, rapid rise of dipicolinate synthesis provoked by the addition of gramicidin or tyrocidine. The induction of sporulation by gramicidin occurred at very low peptide concentrations (0.03 microM), which also brought about an acute depletion of intracellular ATP. In sporulation accelerated by nutrient broth, no depression of ATP level was observed and nonionophoric analogues of gramicidin were unable to substitute for gramicidin in inducing sporulation.


Subject(s)
Adenosine Triphosphate/metabolism , Bacillus/physiology , Gramicidin/pharmacology , Adenosine Diphosphate/metabolism , Bacillus/drug effects , Bacillus/metabolism , Culture Media , Gramicidin/biosynthesis , Nitrogen/pharmacology , Peptide Hydrolases/biosynthesis , Picolinic Acids/biosynthesis , Spores, Bacterial , Tyrocidine/biosynthesis , Tyrocidine/pharmacology
20.
J Gen Microbiol ; 130(4): 747-55, 1984 Apr.
Article in English | MEDLINE | ID: mdl-6204006

ABSTRACT

Mutants of Bacillus brevis ATCC 8185 were isolated which were unable to produce detectable amounts of either tyrocidine or linear gramicidin, or both peptide antibiotics. Tyrocidine-negative mutants (BM5, BM21, BM44) sporulated normally. Gramicidin-negative mutants (BM2, BM24) were oligosporogenous, and mutants unable to produce both peptides (S18, S19) were asporogenous. Addition of tyrocidine and/or gramicidin to asporogenous mutants in rich medium did not stimulate sporulation. However, these mutants formed normal spores after being transferred to nitrogen-free medium and upon the addition of tyrocidine. It was demonstrated that nutrient broth has a suppressive effect on tyrocidine-induced sporulation of S18. The tyrocidine-negative mutant BM44, sporogenous in rich medium, could sporulate under nitrogen deprivation only if supplemented with tyrocidine. The significance of the peptide antibiotics for a regulatory role in sporogenesis of B. brevis is discussed.


Subject(s)
Bacillus/physiology , Gramicidin/biosynthesis , Tyrocidine/biosynthesis , Tyrothricin/biosynthesis , Bacillus/genetics , Bacillus/metabolism , Gramicidin/pharmacology , Mutation , Spores, Bacterial , Tyrocidine/pharmacology
SELECTION OF CITATIONS
SEARCH DETAIL
...