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1.
Microbiol Immunol ; 63(7): 261-268, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31209918

ABSTRACT

Pasteurella multocida is one of the most important bacteria responsible for diseases of animals. Crude extracts from sonicated P. multocida strain Dainai-1, which is serotype A isolated from bovine pneumonia, were found to inhibit proliferation of mouse spleen cells stimulated with Con A. The crude extract was purified by cation and anion exchange chromatography and hydroxyapatite chromatography. Its molecular weight was 27 kDa by SDS-PAGE and it was named PM27. PM27 was found to inhibit proliferation of mouse spleen cells stimulated with Con A as effectively as did the crude extract; however, its activity was lost after heating to 100°C for 20 min. PM27 did not directly inhibit proliferation of HT-2 cells, which are an IL-2-dependent T cell line, nor did it modify IL-2 production by Con A-stimulated mouse spleen cells. The N-terminal amino acid sequence of PM27 was determined and BLAST analysis revealed its identity to uridine phosphorylase (UPase) from P. multocida. UPase gene from P. multocida Dainai-1 was cloned into expression vector pQE-60 in Escherichia coli XL-1 Blue. Recombinant UPase (rUPase) tagged with His at the C-terminal amino acid was purified with Ni affinity chromatography. rUPase was found to inhibit proliferation of mouse spleen cells stimulated with Con A; however, as was true for PM27, its activity was lost after heating to 100°C for 20 min. Thus, PM27/UPase purified from P. multocida has significant antiproliferative activity against Con A-stimulated mouse spleen cells and may be a virulence factor.


Subject(s)
Bacterial Outer Membrane Proteins/pharmacology , Cell Proliferation/drug effects , Pasteurella multocida/metabolism , Uridine Phosphorylase/isolation & purification , Uridine Phosphorylase/pharmacology , Amino Acid Sequence , Animals , Bacterial Outer Membrane Proteins/genetics , Bacterial Outer Membrane Proteins/metabolism , Cattle , Cell Line/drug effects , Escherichia coli/genetics , Humans , Interleukin-2/metabolism , Mice , Molecular Weight , Pasteurella multocida/genetics , Phosphorylases , Recombinant Proteins , Spleen , T-Lymphocytes/drug effects , Uridine Phosphorylase/genetics , Uridine Phosphorylase/metabolism
2.
Acta Crystallogr Sect F Struct Biol Cryst Commun ; 68(Pt 11): 1394-7, 2012 Nov 01.
Article in English | MEDLINE | ID: mdl-23143257

ABSTRACT

A high-resolution structure of the complex of Vibrio cholerae uridine phosphorylase (VchUPh) with its physiological ligand thymidine is important in order to determine the mechanism of the substrate specificity of the enzyme and for the rational design of pharmacological modulators. Here, the expression and purification of VchUPh and the crystallization of its complex with thymidine are reported. Conditions for crystallization were determined with an automated Cartesian Dispensing System using The Classics, MbClass and MbClass II Suites crystallization kits. Crystals of the VchUPh-thymidine complex (of dimensions ∼200-350 µm) were grown by the sitting-drop vapour-diffusion method in ∼7 d at 291 K. The crystallization solution consisted of 1.5 µl VchUPh (15 mg ml(-1)), 1 µl 0.1 M thymidine and 1.5 µl reservoir solution [15%(w/v) PEG 4000, 0.2 M MgCl(2).6H2O in 0.1 M Tris-HCl pH 8.5]. The crystals diffracted to 2.12 Šresolution and belonged to space group P2(1) (No. 4), with unit-cell parameters a=91.80, b=95.91, c=91.89 Å, ß=119.96°. The Matthews coefficient was calculated as 2.18 Å3 Da(-1); the corresponding solvent content was 43.74%.


Subject(s)
Bacterial Proteins/chemistry , Thymidine/chemistry , Uridine Phosphorylase/chemistry , Vibrio cholerae/enzymology , Amino Acid Motifs , Bacterial Proteins/isolation & purification , Catalytic Domain , Crystallization , Crystallography, X-Ray , Electrophoresis, Polyacrylamide Gel , Escherichia coli , Models, Molecular , Uridine Phosphorylase/isolation & purification
3.
Article in English | MEDLINE | ID: mdl-19478441

ABSTRACT

Uridine phosphorylase (UPh; EC 2.4.2.3) catalyzes the phosphorolytic cleavage of the N-glycosidic bond of uridine to form ribose 1-phosphate and uracil. This enzyme also activates pyrimidine-containing drugs, including 5-fluorouracil (5-FU). In order to better understand the mechanism of the enzyme-drug interaction, the complex of Salmonella typhimurium UPh with 5-FU was cocrystallized using the hanging-drop vapour-diffusion method at 294 K. X-ray diffraction data were collected to 2.2 A resolution. Analysis of these data revealed that the crystal belonged to space group C2, with unit-cell parameters a = 158.26, b = 93.04, c = 149.87 A, alpha = gamma = 90, beta = 90.65 degrees . The solvent content was 45.85% assuming the presence of six hexameric molecules of the complex in the unit cell.


Subject(s)
Antimetabolites, Antineoplastic/metabolism , Fluorouracil/metabolism , Uridine Phosphorylase/analysis , Uridine Phosphorylase/metabolism , X-Ray Diffraction , Binding Sites , Crystallization , Data Collection , Escherichia coli/genetics , Models, Molecular , Plasmids , Protein Binding , Salmonella typhimurium/enzymology , Statistics as Topic , Temperature , Transformation, Bacterial , Uridine Phosphorylase/chemistry , Uridine Phosphorylase/isolation & purification , Water/metabolism
4.
Article in English | MEDLINE | ID: mdl-17909287

ABSTRACT

Uridine phosphorylase (UPh; EC 2.4.2.3) is a member of the pyrimidine nucleoside phosphorylase family of enzymes which catalyzes the phosphorolytic cleavage of the C-N glycoside bond of uridine, with the formation of ribose 1-phosphate and uracil. This enzyme has been shown to be important in the activation and catabolism of fluoropyrimidines. Modulation of its enzymatic activity may affect the therapeutic efficacy of chemotherapeutic agents. The structural investigation of the bacterial uridine phosphorylases, both unliganded and complexed with substrate/product analogues and inhibitors, may help in understanding the catalytic mechanism of the phosphorolytic cleavage of uridine. Salmonella typhimurium uridine phosphorylase has been crystallized with 2,2'-anhydrouridine. X-ray diffraction data were collected to 2.15 A. Preliminary analysis of the diffraction data indicates that the crystal belongs to space group P2(1)2(1)2(1), with unit-cell parameters a = 88.52, b = 123.98, c = 133.52 A. The solvent content is 45.51%, assuming the presence of one hexamer molecule per asymmetric unit.


Subject(s)
Salmonella typhimurium/enzymology , Uridine Phosphorylase/chemistry , Uridine/analogs & derivatives , Crystallization , Crystallography, X-Ray , Substrate Specificity , Uridine/chemistry , Uridine Phosphorylase/isolation & purification
5.
Cryo Letters ; 25(3): 195-204, 2004.
Article in English | MEDLINE | ID: mdl-15216384

ABSTRACT

The ice-nucleating bacterium, Pantoea agglomerans NBRC12686 responds to a decrease in temperature with the induction of proteins, which are classified as cold-induced proteins. When the temperature of the strain NBRC12686 culture was lowered from 30 degree C to 12 degree C, the viability after freezing treatment significantly improved. By the use of SDS-polyacrylamide gel electrophoresis and high-performance liquid chromatography (HPLC), we analyzed the cold acclimation response in strain NBRC12686. After a shift from 30 degree C to 12 degree C, several proteins and saccharides were synthesized. After 48 h of cold acclimation, the induction level of proteins increased. In addition, ribose-1-phosphate was fractionated by HPLC using a TSK gel Sugar AXG column. Cell-free extracts were prepared from a cold acclimation culture (30 degree C to 12 degree C) and a non-cold acclimation culture (30 degree C), and then subjected to SDS-PAGE. A protein of approximately 29.7-kDa was present in the cold acclimation culture but was not present in the non-cold acclimation culture. The 29.7-kDa protein was purified by various chromatographies. We found that apparent molecular mass of the protein was approximately 119-kD constructed of 4 subunits of 29.7-kDa each. Based on the analysis of the N-terminal amino acid sequences of proteins, the 29.7-kDa protein had 83 percent identity with that of uridine phosphorylase (UPase) obtained from Escherichia coli K-12. We confirmed that the 29.7-kDa protein was novel, judged by molecular mass different from the already-known UPase or cryoprotectants. The cryoprotective activity of UPase of 29.7-kDa protein for LDH was approximately 30 percent at 5.0 microgram per ml of the protein. Furthermore, UPase had a high level of cryoprotective activity even after treating at 70 degree C for 30 min, but had no activity after treating at 100 degree C. We could elucidate that UPase from strain NBRC12686 had a cryoprotective activity as well as an enzyme activity, and it seems that UPase works in two different mechanisms for freezing tolerance.


Subject(s)
Pantoea/enzymology , Uridine Phosphorylase/isolation & purification , Adaptation, Physiological/physiology , Cryoprotective Agents/isolation & purification , Freezing
6.
Wei Sheng Wu Xue Bao ; 43(3): 354-60, 2003 Jun.
Article in Chinese | MEDLINE | ID: mdl-16279202

ABSTRACT

A uridine phosphorylase(UPase) was isolation from Enterobacter aerogenes EAM-Z1 and purified by means of ammonium sulfate precipitation, DEAE-cellulose, Phenyl-Sepharose, DEAE-Sepharose, FPLC ion exchange, and Sephacryl S-200 column chromatography. The purified UPase showed homogeneity on the native polacrylamide gel electrophoresis. The UPase is a trimer of 43 kD subunits. Fifteen residues from the amino terminal end of UPase were identified as MRMVDLIATKRDGGE. The isoelectric point was pH 4.46. Michaelis constant for uridine was 0.29 mmol/L. The UPase has a maximal activity at a pH value of 7.8 and 50 degrees C. The UPase could catalyses the phosphorolysis of uridine, thymidine, 5-Fluorouridine, 5-Fluoro-2'-deoxyuridine, uracil-beta-D-arbinofuranoside, and could also catalyse the synthesis of 5-Fluorouridine, a better prodrug form of the anticancer drug 5-fluorouracil, from 5-fluorouracil and uridine, and 47% uridine was converted to 5-Fluoro-uridine.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/isolation & purification , Enterobacter aerogenes/enzymology , Uridine Phosphorylase/chemistry , Uridine Phosphorylase/isolation & purification , Enterobacter aerogenes/chemistry , Enzyme Stability , Isoelectric Point , Kinetics , Molecular Weight
7.
Protein Expr Purif ; 24(1): 56-60, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11812223

ABSTRACT

The Escherichia coli genes encoding purine nucleoside phosphorylase, uridine phosphorylase, and thymidine phosphorylase were cloned into pET plasmids to generate highly effective E. coli BL21(DE3) strains producing each of these enzymes. Optimum conditions for biosynthesis of each enzyme as a soluble protein with intact biological activity were found. The crude preparations are approximately 80% pure and can be used immediately for enzymatic transglycosylation. The enzyme preparations were purified to homogeneity by two steps including fractional precipitation with ammonium sulfate and subsequent chromatography on Sephadex G-100 and DEAE-Sephacel.


Subject(s)
Escherichia coli/enzymology , Purine-Nucleoside Phosphorylase/genetics , Thymidine Phosphorylase/genetics , Uridine Phosphorylase/genetics , Cloning, Molecular , Escherichia coli/genetics , Gene Expression , Plasmids , Purine-Nucleoside Phosphorylase/biosynthesis , Purine-Nucleoside Phosphorylase/isolation & purification , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Thymidine Phosphorylase/biosynthesis , Thymidine Phosphorylase/isolation & purification , Transcription, Genetic , Uridine Phosphorylase/biosynthesis , Uridine Phosphorylase/isolation & purification
8.
J Biol Chem ; 276(16): 13302-7, 2001 Apr 20.
Article in English | MEDLINE | ID: mdl-11278417

ABSTRACT

Uridine phosphorylase (UPase), a key enzyme in the pyrimidine salvage pathway, is associated with the intermediate filament protein vimentin, in NIH 3T3 fibroblasts and colon 26 cells. Affinity chromatography was utilized to purify UPase from colon 26 and NIH 3T3 cells using the uridine phosphorylase inhibitor 5'-amino benzylacyclouridine linked to an agarose matrix. Vimentin copurification with UPase was confirmed using both Western blot analysis and MALDI-MS methods. Separation of cytosolic proteins using gel filtration chromatography yields a high molecular weight complex containing UPase and vimentin. Purified recombinant UPase and recombinant vimentin were shown to bind in vitro with an affinity of 120 pm and a stoichiometry of 1:2. Immunofluorescence techniques confirm that UPase is associated with vimentin in both NIH 3T3 and colon 26 cells and that depolymerization of the microtubule system using nocodazole results in UPase remaining associated with the collapsed intermediate filament, vimentin. Our data demonstrate that UPase is associated with both the soluble and insoluble pools of vimentin. Approximately 60-70% of the total UPase exists in the cytosol as a soluble protein. Sequential extraction of NIH 3T3 or colon 26 cells liberates an additional 30-40% UPase activity associated with a detergent extractable fraction. All pools of UPase have been shown to possess enzymatic activity. We demonstrate for the first time that UPase is associated with vimentin and the existence of an enzymatically active cytoskeleton-associated UPase.


Subject(s)
Uridine Phosphorylase/metabolism , Vimentin/metabolism , 3T3 Cells , Animals , Chromatography, Affinity , Colon , Cytoskeleton/ultrastructure , Fluorescent Antibody Technique , Humans , Kinetics , Mice , Peptide Fragments/chemistry , Protein Binding , Recombinant Proteins/analysis , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Uridine Phosphorylase/analysis , Uridine Phosphorylase/isolation & purification , Vimentin/analysis , Vimentin/isolation & purification
9.
Cancer Res ; 58(23): 5418-24, 1998 Dec 01.
Article in English | MEDLINE | ID: mdl-9850074

ABSTRACT

Uridine phosphorylase (UPase) catalyzes the reversible phosphorolysis of uridine to uracil. We purified the enzyme from the murine colon 26 tumor using a two-step procedure through 5-amino-benzylacyclouridine affinity chromatography. Antibodies raised in rabbits against the purified protein revealed single bands in Western blots of normal human tissue and tumor extracts. The polyclonal antibody used to screen a human liver expression library allowed the isolation of a 1.2-kb clone that contained the entire open reading frame of the human UPase. The UPase cDNA has been expressed as a fusion protein in Escherichia coli using the pMal-C2 vector. The kinetic analysis demonstrated that the recombinant UPase preferentially uses uridine, 5-fluorouracil, and uracil as substrates, although lower levels of activity were observed with 2-deoxyuridine and thymidine. Clinical samples of human tumors and adjacent normal tissues were assayed for phosphorolytic activity and sensitivity to 5-benzylacyclouridine (BAU), a potent inhibitor of the enzyme presently in Phase I-II clinical trial. Activity in normal tissues appeared to be low but very sensitive to BAU (approximately 90% inhibition at 10 microM). Tumors had generally 2-3-fold greater activity compared with adjacent normal tissues. In breast cancer specimens and head-neck squamous carcinomas, however, uridine cleavage was only partially inhibited (40-60%) by 10 or 100 microM BAU. The BAU-insensitive activity requires phosphate and pH conditions similar to the normal enzyme, and the new phosphorolytic activity was independent from thymidine phosphorylase. The BAU-insensitive phosphorolytic activity in selected tumors, coupled with the potent inhibitory activity of BAU against the "classical" uridine phosphorylase in normal human tissues, provides the rationale for combining BAU with 5-fluorouracil in the treatment of breast and head-neck tumors.


Subject(s)
Enzyme Inhibitors/pharmacology , Neoplasms/enzymology , Uracil/analogs & derivatives , Uridine Phosphorylase/metabolism , Uridine/metabolism , Amino Acid Sequence , Animals , Antibody Specificity , Cloning, Molecular , DNA, Complementary/genetics , DNA, Complementary/metabolism , Drug Screening Assays, Antitumor , Female , Humans , Kinetics , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Neoplasms/drug therapy , Rabbits , Sequence Homology, Amino Acid , Uracil/pharmacology , Uridine Phosphorylase/biosynthesis , Uridine Phosphorylase/isolation & purification
10.
Bioorg Khim ; 24(5): 381-7, 1998 May.
Article in Russian | MEDLINE | ID: mdl-9661793

ABSTRACT

Genes of uridine phosphorylases (udp) from Klebsiella aerogenes and Salmonella typhimurium were cloned and expressed. Highly effective producer strains of the corresponding proteins were constructed. Enzymic properties of the UPases obtained were studied and compared with those from the Escherichia coli enzyme. Mutant forms of UPase from E. coli (D5E, D5N, D5A) were prepared by site-directed mutagenesis techniques. It was shown that the Asp5 residue plays an insignificant role in the formation of the active form of the protein.


Subject(s)
Escherichia coli/enzymology , Gene Expression Regulation, Enzymologic/genetics , Klebsiella pneumoniae/genetics , Salmonella typhimurium/genetics , Uridine Phosphorylase/biosynthesis , Uridine Phosphorylase/genetics , Amino Acid Sequence , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Escherichia coli/genetics , Klebsiella pneumoniae/enzymology , Molecular Sequence Data , Mutagenesis, Site-Directed , Oligodeoxyribonucleotides/chemistry , Polymerase Chain Reaction , Restriction Mapping , Salmonella typhimurium/enzymology , Sequence Homology, Amino Acid , Uridine Phosphorylase/isolation & purification
11.
Biochemistry (Mosc) ; 63(2): 195-9, 1998 Feb.
Article in English | MEDLINE | ID: mdl-9526114

ABSTRACT

The structural udp gene encoding uridine phosphorylase (UPase) was cloned from the Salmonella typhimurium chromosome and overexpressed in E. coli cells. The S. typhimurium UPase was purified to an apparently homogeneous state, and some physicochemical characteristics of the enzyme were studied. The molecular weight of one subunit of UPase is 27.5 kD, and the optimal pH for its activity is 7.2--7.4. The native S. typhimurium UPase consists of six identical subunits, and its molecular weight is about 165 kD. According to these parameters, the S. typhimurium UPase is similar to the E. coli UPase. However, these enzymes differ substantially from one another by the substrate sensitivity and sensitivity to polarity of the medium. The S. typhimurium UPase has much higher phosphorylation activity toward thymidine, deoxyuridine, and 5;-bromide- or 5;-fluoride-containing analogs of nucleosides than that of E. coli UPase.


Subject(s)
Salmonella typhimurium/enzymology , Uridine Phosphorylase/isolation & purification , Cloning, Molecular , DNA, Bacterial/chemistry , DNA, Bacterial/metabolism , Escherichia coli/enzymology , Hydrogen-Ion Concentration , Kinetics , Salmonella typhimurium/genetics , Substrate Specificity , Uridine Phosphorylase/genetics , Uridine Phosphorylase/metabolism
12.
Acta Biochim Pol ; 43(4): 733-41, 1996.
Article in English | MEDLINE | ID: mdl-9104511

ABSTRACT

A single pyrimidine nucleoside phosphorylase was found in the cytoplasmic extract from Hymenolepis diminuta. This enzyme preferentially cleaves uridine and, to a much lesser extent, thymidine. Its presence directly indicates the existence of pyrimidine nucleoside salvage pathway in this parasite. Detailed kinetic studies in the phosphorolytic and synthetic direction pointed to the sequential mechanism of these reactions. For phosphorolysis, Kurd = 33 microM and Kp = 806 microM. For synthesis of uridine, Kura = 204 microM and K1-P-rib. = 50 microM. Over six times higher K(m) for uracil than for uridine indicates that phosphorolysis is the favoured reaction in this tapeworm. Well known inhibitors of mammalian uridine phosphorylase: 2,2'-anhydro-5-ethyluridine and 1-(1,3-dihydroxy-2-propoxymethyl)-5-benzyluracil (DHPBU), both with Ki = 0.07 microM were potent competitive inhibitors of the enzyme from H. diminuta. The newly synthesized 2,3'-anhydro-5-ethyluridine (K. Felczak, unpublished) showed only moderate inhibitory activity (Ki = 14 microM) similarly as 1-(1,3-dihydroxy-2-propoxy-methyl)-5-benzyluracil. The same order of Ki values obtained for the investigated inhibitors vs uridine phosphorylase, irrespective whether the enzyme was isolated from rat intestinal mucosa (Drabikowska et al., 1987, Biochem. Pharmacol. 36, 4125-4128) or H. diminuta may point to a great similarity between binding sites on the parasite and the host enzyme.


Subject(s)
Hymenolepis/enzymology , Uridine Phosphorylase/metabolism , Animals , Chromatography, Ion Exchange , Enzyme Inhibitors/pharmacology , Hydrolysis , Kinetics , Male , Rats , Rats, Wistar , Uridine/analogs & derivatives , Uridine/pharmacology , Uridine Phosphorylase/antagonists & inhibitors , Uridine Phosphorylase/isolation & purification
13.
J Biol Chem ; 270(20): 12191-6, 1995 May 19.
Article in English | MEDLINE | ID: mdl-7744869

ABSTRACT

Uridine phosphorylase was purified 10,300-fold from tumors of the murine colorectal adenocarcinoma cell line, Colon-26. Degenerate DNA probes were synthesized corresponding to partial amino acid sequences and used to screen a Colon-26 cDNA library. A cDNA clone of 1327 base pairs that contains a 5' untranslated region, a coding region of 933 base pairs, and a 3' nontranslated region with a polyadenylated tail was identified. The cDNA was confirmed to be uridine phosphorylase by 1) sequence comparison to uridine phosphorylase of Escherichia coli, 2) substrate specificity studies with recombinant protein expressed in COS-7 cells that demonstrated relatively high enzyme activity with uridine as substrate compared low levels when thymidine was used, and 3) inhibition of enzyme activity by the competitive inhibitor 2,2'-anhydro-5-ethyluridine. Northern blot analysis using the cDNA as a probe, demonstrated high levels of mRNA expression in Colon-26. Expression was low in NIH3T3 cells, but high in DMBA-3 and PH-1 cells, which are NIH3T3-derived cells that have been transformed with mutated murine Ha-ras and viral Ha-ras, respectively. Expression of uridine phosphorylase mRNA in these cell lines was further enhanced by treating the cells with the inflammatory cytokines, tumor necrosis factor-alpha, interleukin 1 alpha, and interferon gamma.


Subject(s)
Genes , Mice/genetics , Uridine Phosphorylase/genetics , Adenocarcinoma/enzymology , Adenocarcinoma/pathology , Amino Acid Sequence , Animals , Base Sequence , Cell Division , Cell Line, Transformed , Chlorocebus aethiops , Cloning, Molecular , Colorectal Neoplasms/enzymology , Colorectal Neoplasms/pathology , DNA, Complementary/genetics , DNA, Neoplasm/genetics , Escherichia coli , Gene Library , Genes, ras , Interferon-gamma/pharmacology , Interleukin-1/pharmacology , Mice, Inbred BALB C , Molecular Sequence Data , Neoplasm Proteins/metabolism , Neoplasm Transplantation , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/pharmacology , Sequence Alignment , Sequence Homology, Amino Acid , Substrate Specificity , Tumor Cells, Cultured , Tumor Necrosis Factor-alpha/pharmacology , Uridine Phosphorylase/antagonists & inhibitors , Uridine Phosphorylase/biosynthesis , Uridine Phosphorylase/isolation & purification
14.
J Biol Chem ; 270(17): 10050-5, 1995 Apr 28.
Article in English | MEDLINE | ID: mdl-7730307

ABSTRACT

Woodward's reagent K (WRK) completely inactivated Escherichia coli uridine phosphorylase by reversible binding in the active site (Ki = 0.07 mM) with subsequent modification of a carboxyl (k2 = 1.2 min-1). Neither substrate alone protected uridine phosphorylase from inactivation. The presence of phosphate did not affect the Ki and k2 values. The addition of uracil or uridine led to a significant increase of both Ki (to 2.5 or 2.1 mM, respectively) and k2 (to 6.1 or 4.8 min-1, respectively) values. Thus, WRK could react in accordance with slow (high affinity) and fast (low affinity) mechanisms. Combined addition of phosphate and uracil completely protected uridine phosphorylase. Tryptic digestion yielded a single modified peptide (Ser4-Asp(WRK)-Val-Phe-His-Leu-Gly-Leu-Thr-Lys13). Treatment of the modified enzyme with hydroxylamine led to removal of the bulky WRK residue and replacement of the Asp5 carboxyl by a hydroxamic group. The enzyme thus obtained recovered about 10% of initial specific activity, whereas its substrate binding ability changed only moderately; the Km values for phosphate and uridine were changed from 5.1 and 0.19 mM (or 7.3 and 0.14 mM according to Leer et al. (Leer, J.C., Hammer-Jespersen, K., and M. Schwartz (1977) Eur. J. Biochem. 75, 217-224)) to 22.6 and 0.12 mM, respectively. The hydroxamic enzyme had higher thermostability than the native enzyme. The results obtained demonstrated the importance of the carboxyl at position 5. The loss of activity after selective group replacement is due to impaired stabilization of the transition state rather than to a decline in substrate affinity or change of the active site structure.


Subject(s)
Aspartic Acid/chemistry , Escherichia coli/enzymology , Isoxazoles/chemistry , Uridine Phosphorylase/antagonists & inhibitors , Amino Acid Sequence , Binding Sites , Enzyme Activation , Hydroxamic Acids/chemistry , Indicators and Reagents , Kinetics , Molecular Sequence Data , Peptide Mapping , Uridine Phosphorylase/chemistry , Uridine Phosphorylase/isolation & purification
15.
Biochem Int ; 26(4): 607-15, 1992 Mar.
Article in English | MEDLINE | ID: mdl-1610370

ABSTRACT

Uridine phosphorylase (UPH) from Escherichia coli K-12 has been purified to near homogeneity from a strain harbouring the udp gene, encoding UPH, on a multicopy plasmid. UPH was purified to electrophoretic homogeneity with the specific activity 230 units/mg with a recovery of 80%, yielding 120 mg of enzyme from 3g cells. Crystals of enzyme suitable for X-ray diffraction analysis were obtained in a preparative ultracentrifuge. The packing of the molecules in the crystals may be described by the space group P2(1)2(1)2(1) with the unit cell constants a = 90.4; b = 128.8; c = 136.8 A. There is one molecule per asymmetric unit, Vm = 2.4. These crystals diffract to at least 2.5-2.7 A resolution. The hexameric structure of UPH was directly demonstrated by electron microscopy study and image processing.


Subject(s)
Escherichia coli/enzymology , Uridine Phosphorylase/isolation & purification , Crystallization , Escherichia coli/genetics , Protein Conformation , Uridine Phosphorylase/chemistry , Uridine Phosphorylase/genetics , X-Ray Diffraction
16.
Agric Biol Chem ; 55(7): 1849-57, 1991 Jul.
Article in English | MEDLINE | ID: mdl-1368721

ABSTRACT

An orotidine-phosphorolyzing enzyme and a purine nucleoside phosphorylase (PNPase) of Erwinia carotovora AJ 2992, which is a potent producer of ribavirin (1-beta-D-ribofuranosyl-1,2,4-triazole-3-carboxamide), an antiviral agent, from orotidine and 1,2,4-triazole-3-carboxamide (TCA), were purified 23-fold and 103-fold, respectively. At each purification step, the orotidine-phosphorolyzing enzyme was always co-purified with an uridine phosphorylase (UPase) and its activity could not be separated from that of the UPase after it showed as a single band on SDS-polyacrylamide gel electrophoresis. These results suggest that this enzyme may be identical with UPase. The purified enzyme had a molecular weight of 68,000 +/- 2,000, and seemed to be a dimer. The optimal temperatures and pH values were 60 degrees C and 6.0 for orotidine phosphorolysis, and 70 degrees C and 7.0 for uridine phosphorolysis. The Michaelis constants for uridine and orotidine were 0.75 mM and 10.87 mM, respectively, at 40 degrees C. The PNPase of E. carotovora AJ 2992 had a molecular weight of 58,000 +/- 2,000 and seemed to be a dimer. The Michaelis constants for inosine and guanosine were 1.92 mM and 1.85 mM, respectively, at 40 degrees C. The PNPase was completely inactivated by p-chloromercuribenzoate.


Subject(s)
Pectobacterium carotovorum/enzymology , Purine-Nucleoside Phosphorylase/isolation & purification , Uridine Phosphorylase/isolation & purification , Amino Acid Sequence , Hydrogen-Ion Concentration , Isoelectric Point , Kinetics , Metals/pharmacology , Molecular Sequence Data , Molecular Weight , Osmolar Concentration , Phosphates/pharmacology , Purine-Nucleoside Phosphorylase/antagonists & inhibitors , Purine-Nucleoside Phosphorylase/metabolism , Ribavirin/metabolism , Substrate Specificity , Temperature , Uridine Phosphorylase/metabolism
17.
Arch Biochem Biophys ; 286(1): 1-5, 1991 Apr.
Article in English | MEDLINE | ID: mdl-1897940

ABSTRACT

2,2'-Anhydro-3'-deoxy-5-ethyluridine, a new pyrimidine nucleoside analog, has been examined in terms of its binding potency to uridine phosphorylase, and its conformation in solution (NMR) was studied. 2,2'-Anhydro-3'-deoxy-5-ethyluridine has a Ki value of 3.4 microM for uridine phosphorylase from rat intestinal mucosa. This value is approximately one order of magnitude lower than the Km for uridine (22 microM), the natural substrate. The presence of the 3'-OH group (in the ribo-configuration) on pyrimidine nucleoside analogs may not be considered a prerequisite for the binding to uridine phosphorylase; however, it enhances the binding in the case of flexible ligands cooperating in the process of conformation change toward a more favorable enzyme-ligand interaction. The presence of the 3'-OH group in pyrimidine nucleosides seems to be essential if the molecule is to become a substrate.


Subject(s)
Deoxyuridine/analogs & derivatives , Uridine Phosphorylase/metabolism , Uridine/analogs & derivatives , Uridine/metabolism , Animals , Deoxyuridine/metabolism , Intestinal Mucosa/enzymology , Kinetics , Magnetic Resonance Spectroscopy/methods , Molecular Conformation , Molecular Structure , Rats , Uridine/chemical synthesis , Uridine/chemistry , Uridine Phosphorylase/antagonists & inhibitors , Uridine Phosphorylase/isolation & purification
18.
Biochim Biophys Acta ; 1040(2): 287-93, 1990 Sep 03.
Article in English | MEDLINE | ID: mdl-2119230

ABSTRACT

Uridine and thymidine phosphorylases have been purified to homogeneity from crude extracts of Lactobacillus casei. Both enzymes had an apparent molecular mass of about 80 kDa. Uridine phosphorylase consisted of four identical subunits while thymidine phosphorylase was composed of two identical ones. The sequence of 23 amino-acid residues from its N-terminal end was analyzed. Uridine phosphorylase had a Km of 5.0 x 10(-3) M for uridine and 1.24 x 10(-1) M for phosphate, while thymidine phosphorylase had a Km of 1.32 x 10(-1) M for thymidine and 1.0 x 10(-1) M for phosphate. Uridine phosphorylase was equally active with uridine and 5-methyluridine, but had a low activity towards thymidine. Its activity was inhibited competitively by 3-O-methyl-alpha D-glucopyranoside, on the other hand thymidine phosphorylase activity was not affected by this compound. Thymidine phosphorylase showed specificity towards the deoxyribosyl moiety of the substrate. In addition, it required a nonsubstituted pyrimidine moiety or one which was substituted in position 5. The pattern of the double-reciprocal plots of the initial velocities vs. the concentrations of either one of the substrates, and the product inhibition kinetics, indicated that the catalytic mechanism of both enzymatic reactions is sequential rather than Ping-Pong and that the sequence of the addition of the substrates is random (rapid equilibrium). In the case of the uridine phosphorylase-catalyzed reaction, the products are also released randomly, while in the thymidine phosphorylase-catalyzed reaction deoxyribose 1-phosphate is released after thymine.


Subject(s)
Lacticaseibacillus casei/enzymology , Pentosyltransferases/isolation & purification , Thymidine Phosphorylase/isolation & purification , Uridine Phosphorylase/isolation & purification , 3-O-Methylglucose , Amino Acid Sequence , Animals , Chromatography, Gel , Electrophoresis, Polyacrylamide Gel , Humans , Kinetics , Methylglucosides/pharmacology , Molecular Sequence Data , Molecular Weight , Rats , Sequence Homology, Nucleic Acid , Substrate Specificity , Thymidine Phosphorylase/metabolism , Uridine Phosphorylase/metabolism
19.
Mol Biochem Parasitol ; 30(3): 271-7, 1988 Sep.
Article in English | MEDLINE | ID: mdl-3185613

ABSTRACT

Giardia lamblia is totally dependent on salvage synthesis for its pyrimidine requirements. The salvage pathway enzyme, uridine phosphorylase (pyrimidine nucleoside phosphorylase) was purified to apparent homogeneity from G. lamblia crude extracts by fast protein liquid chromatography and gel filtration on a Superose 12 column, resulting in an overall 3500 fold purification and a recovery of 7.5%. Mono P chromatofocusing gave rise to a major activity peak eluting from the column at pH 5.9, indicating that the enzyme has an isoelectric point (pI) at approximately this value. The molecular weight was found to be 43,000 +/- 2000 from the Superose 12 column, while sodium dodecyl sulphate-polyacrylamide gel electrophoresis of the purified enzyme gave a single protein band with a subunit molecular weight of 38,000 +/- 2000, indicating that it is a monomer. The activities of uridine, deoxyuridine and thymidine phosphorylases from G. lamblia remained associated throughout the purification procedure, suggesting that one enzyme is responsible for the three enzyme activities. The ratio of activities was consistent throughout the purification procedure. In the reverse (anabolic) direction, the enzyme could use both uracil and thymine as substrates. The properties of the phosphorylase differ significantly from those of the mammalian host.


Subject(s)
Giardia/enzymology , Pentosyltransferases/isolation & purification , Thymidine Phosphorylase/isolation & purification , Uridine Phosphorylase/isolation & purification , Animals , Chromatography, Liquid/methods , Electrophoresis, Polyacrylamide Gel , Kinetics , Substrate Specificity , Thymidine Phosphorylase/physiology , Uridine Phosphorylase/physiology
20.
Int J Biochem ; 18(5): 431-5, 1986.
Article in English | MEDLINE | ID: mdl-3519310

ABSTRACT

Uridine phosphorylase (EC 2.4.2.3) from Escherichia coli B is an oligomeric protein composed of four identical subunits of 29,000 mol. wt. The enzyme has four half-cystine residues per subunit titrable only in denaturing condition. No disulphide linkages either inter- or intra-chain are present. The isoelectric point is 5.25. The enzyme shows strict specificity toward uridine and 5-methyluridine and is inhibited by thymine, deoxycytidine and heavy metal ions.


Subject(s)
Escherichia coli/enzymology , Pentosyltransferases/isolation & purification , Uridine Phosphorylase/isolation & purification , Amino Acids/analysis , Deoxycytidine/pharmacology , Isoelectric Focusing , Molecular Weight , Spectrophotometry, Ultraviolet , Substrate Specificity , Sulfhydryl Compounds/analysis , Thymine/pharmacology , Uridine Phosphorylase/antagonists & inhibitors
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