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1.
J Biol Chem ; 299(2): 102847, 2023 02.
Article in English | MEDLINE | ID: mdl-36587764

ABSTRACT

Duchenne muscular dystrophy is a lethal muscle wasting disease caused by the absence of the protein dystrophin. Utrophin is a dystrophin homologue currently under investigation as a protein replacement therapy for Duchenne muscular dystrophy. Dystrophin is hypothesized to function as a molecular shock absorber that mechanically stabilizes the sarcolemma. While utrophin is homologous with dystrophin from a molecular and biochemical perspective, we have recently shown that full-length utrophin expressed in eukaryotic cells is stiffer than what has been reported for dystrophin fragments expressed in bacteria. In this study, we show that differences in expression system impact the mechanical stiffness of a model utrophin fragment encoding the N terminus through spectrin repeat 3 (UtrN-R3). We also demonstrate that UtrN-R3 expressed in eukaryotic cells was phosphorylated while bacterial UtrN-R3 was not detectably phosphorylated. Using atomic force microscopy, we show that phosphorylated UtrN-R3 exhibited significantly higher unfolding forces compared to unphosphorylated UtrN-R3 without altering its actin-binding activity. Consistent with the effect of phosphorylation on mechanical stiffness, mutating the phosphorylated serine residues on insect eukaryotic protein to alanine decreased its stiffness to levels not different from unphosphorylated bacterial protein. Taken together, our data suggest that the mechanical properties of utrophin may be tuned by phosphorylation, with the potential to improve its efficacy as a protein replacement therapy for dystrophinopathies.


Subject(s)
Phosphorylation , Utrophin , Animals , Dystrophin/genetics , Mice, Inbred mdx , Muscle, Skeletal/metabolism , Muscular Dystrophy, Duchenne/genetics , Utrophin/chemistry , Utrophin/genetics , Bacteria , Insecta , Mice
2.
Nat Commun ; 11(1): 5973, 2020 11 25.
Article in English | MEDLINE | ID: mdl-33239610

ABSTRACT

The assembly of actin filaments into distinct cytoskeletal structures plays a critical role in cell physiology, but how proteins localize differentially to these structures within a shared cytoplasm remains unclear. Here, we show that the actin-binding domains of accessory proteins can be sensitive to filament conformational changes. Using a combination of live cell imaging and in vitro single molecule binding measurements, we show that tandem calponin homology domains (CH1-CH2) can be mutated to preferentially bind actin networks at the front or rear of motile cells. We demonstrate that the binding kinetics of CH1-CH2 domain mutants varies as actin filament conformation is altered by perturbations that include stabilizing drugs and other binding proteins. These findings suggest that conformational changes of actin filaments in cells could help to direct accessory binding proteins to different actin cytoskeletal structures through a biophysical feedback loop.


Subject(s)
Actin Cytoskeleton/metabolism , Protein Multimerization , Utrophin/metabolism , Actin Cytoskeleton/chemistry , Actin Depolymerizing Factors/metabolism , Actins , Animals , Cytoplasm/metabolism , HEK293 Cells , HeLa Cells , Humans , Intravital Microscopy , Kinetics , Microscopy, Fluorescence , Mutation , Neuropeptides/metabolism , Point Mutation , Protein Binding/genetics , Protein Domains/genetics , Rabbits , Single Molecule Imaging , Utrophin/chemistry , Utrophin/genetics
3.
Sci Rep ; 9(1): 5210, 2019 03 26.
Article in English | MEDLINE | ID: mdl-30914715

ABSTRACT

Patients with Duchenne muscular dystrophy (DMD) lack the protein dystrophin, which is a critical molecular component of the dystrophin-glycoprotein complex (DGC). Dystrophin is hypothesized to function as a molecular shock absorber that mechanically stabilizes the sarcolemma of striated muscle through interaction with the cortical actin cytoskeleton via its N-terminal half and with the transmembrane protein ß-dystroglycan via its C-terminal region. Utrophin is a fetal homologue of dystrophin that can subserve many dystrophin functions and is therefore under active investigation as a dystrophin replacement therapy for DMD. Here, we report the first mechanical characterization of utrophin using atomic force microscopy (AFM). Our data indicate that the mechanical properties of spectrin-like repeats in utrophin are more in line with the PEVK and Ig-like repeats of titin rather than those reported for repeats in spectrin or dystrophin. Moreover, we measured markedly different unfolding characteristics for spectrin repeats within the N-terminal actin-binding half of utrophin compared to those in the C-terminal dystroglycan-binding half, even though they exhibit identical thermal denaturation profiles. Our results demonstrate dramatic differences in the mechanical properties of structurally homologous utrophin constructs and suggest that utrophin may function as a stiff elastic element in series with titin at the myotendinous junction.


Subject(s)
Utrophin/chemistry , Animals , Mice , Microscopy, Atomic Force , Protein Domains , Repetitive Sequences, Amino Acid , Spectrin , Utrophin/genetics , Utrophin/metabolism
4.
Biochemistry ; 56(20): 2627-2636, 2017 05 23.
Article in English | MEDLINE | ID: mdl-28443334

ABSTRACT

Despite sharing a high degree of sequence similarity, the tandem calponin-homology (CH) domain of utrophin binds to actin 30 times stronger than that of dystrophin. We have previously shown that this difference in actin binding affinity could not be ascribed to the differences in inter-CH-domain linkers [Bandi, S., et al. (2015) Biochemistry 54, 5480-5488]. Here, we examined the role of the N-terminal flanking region. The utrophin tandem CH domain contains a 27-residue flanking region before its CH1 domain. We examined its effect by comparing the structure and function of full-length utrophin tandem CH domain Utr(1-261) and its truncated Utr(28-261) construct. Both full-length and truncated constructs are monomers in solution, with no significant differences in their secondary or tertiary structures. Truncated construct Utr(28-261) binds to actin 30 times weaker than that of the full-length Utr(1-261), similar to that of the dystrophin tandem CH domain with a much shorter flanking region. Deletion of the N-terminal flanking region stabilizes the CH1 domain. The magnitude of the change in binding free energy upon truncation is similar to that of the change in thermodynamic stability. The isolated N-terminal peptide by itself is significantly random coil and does not bind to F-actin in the affinity range of Utr(1-261) and Utr(28-261). These results indicate that the N-terminal flanking region significantly affects the actin binding affinity of tandem CH domains. This observation further stresses that protein regions other than the three actin-binding surfaces identified earlier, irrespective of whether they directly bind to actin, also contribute to the actin binding affinity of tandem CH domains.


Subject(s)
Actins/metabolism , Calcium-Binding Proteins/chemistry , Microfilament Proteins/chemistry , Utrophin/metabolism , Actins/chemistry , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Thermodynamics , Utrophin/chemistry , Calponins
5.
Int J Mol Sci ; 17(10)2016 Oct 18.
Article in English | MEDLINE | ID: mdl-27763556

ABSTRACT

The presented analysis concerns the inter-domain and inter-protein interface in protein complexes. We propose extending the traditional understanding of the protein domain as a function of local compactness with an additional criterion which refers to the presence of a well-defined hydrophobic core. Interface areas in selected homodimers vary with respect to their contribution to share as well as individual (domain-specific) hydrophobic cores. The basic definition of a protein domain, i.e., a structural unit characterized by tighter packing than its immediate environment, is extended in order to acknowledge the role of a structured hydrophobic core, which includes the interface area. The hydrophobic properties of interfaces vary depending on the status of interacting domains-In this context we can distinguish: (1) Shared hydrophobic cores (spanning the whole dimer); (2) Individual hydrophobic cores present in each monomer irrespective of whether the dimer contains a shared core. Analysis of interfaces in dystrophin and utrophin indicates the presence of an additional quasi-domain with a prominent hydrophobic core, consisting of fragments contributed by both monomers. In addition, we have also attempted to determine the relationship between the type of interface (as categorized above) and the biological function of each complex. This analysis is entirely based on the fuzzy oil drop model.


Subject(s)
Protein Multimerization , Protein Stability , Proteins/chemistry , Animals , Archaea/chemistry , Archaeal Proteins/chemistry , Bacteria/chemistry , Bacterial Proteins/chemistry , Dystrophin/chemistry , Histones/chemistry , Humans , Hydrophobic and Hydrophilic Interactions , Models, Molecular , Protein Domains , Utrophin/chemistry
6.
Biochemistry ; 54(46): 6942-50, 2015 Nov 24.
Article in English | MEDLINE | ID: mdl-26516677

ABSTRACT

Dystrophin and utrophin are two muscle proteins involved in Duchenne/Becker muscular dystrophy. Both proteins use tandem calponin-homology (CH) domains to bind to F-actin. We probed the role of N-terminal CH1 and C-terminal CH2 domains in the structure and function of dystrophin tandem CH domain and compared with our earlier results on utrophin to understand the unifying principles of how tandem CH domains work. Actin cosedimentation assays indicate that the isolated CH2 domain of dystrophin weakly binds to F-actin compared to the full-length tandem CH domain. In contrast, the isolated CH1 domain binds to F-actin with an affinity similar to that of the full-length tandem CH domain. Thus, the obvious question is why the dystrophin tandem CH domain requires CH2, when its actin binding is determined primarily by CH1. To answer, we probed the structural stabilities of CH domains. The isolated CH1 domain is very unstable and is prone to serious aggregation. The isolated CH2 domain is very stable, similar to the full-length tandem CH domain. These results indicate that the main role of CH2 is to stabilize the tandem CH domain structure. These conclusions from dystrophin agree with our earlier results on utrophin, indicating that this phenomenon of differential contribution of CH domains to the structure and function of tandem CH domains may be quite general. The N-terminal CH1 domains primarily determine the actin binding function whereas the C-terminal CH2 domains primarily determine the structural stability of tandem CH domains, and the extent of stabilization depends on the strength of inter-CH domain interactions.


Subject(s)
Calcium-Binding Proteins/chemistry , Dystrophin/chemistry , Microfilament Proteins/chemistry , Utrophin/chemistry , Actins/metabolism , Amino Acid Sequence , Biophysical Phenomena , Dystrophin/genetics , Dystrophin/metabolism , Humans , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Interaction Domains and Motifs , Protein Stability , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Structural Homology, Protein , Thermodynamics , Utrophin/genetics , Utrophin/metabolism , Calponins
7.
Biochemistry ; 54(35): 5480-8, 2015 Sep 08.
Article in English | MEDLINE | ID: mdl-26288220

ABSTRACT

Tandem calponin-homology (CH) domains are the most common actin-binding domains in proteins. However, structural principles underlying their function are poorly understood. These tandem domains exist in multiple conformations with varying degrees of inter-CH-domain interactions. Dystrophin and utrophin tandem CH domains share high sequence similarity (∼82%), yet differ in their structural stability and actin-binding affinity. We examined whether the conformational differences between the two tandem CH domains can explain differences in their stability and actin binding. Dystrophin tandem CH domain is more stable by ∼4 kcal/mol than that of utrophin. Individual CH domains of dystrophin and utrophin have identical structures but differ in their relative orientation around the interdomain linker. We swapped the linkers between dystrophin and utrophin tandem CH domains. Dystrophin tandem CH domain with utrophin linker (DUL) has similar stability as that of utrophin tandem CH domain. Utrophin tandem CH domain with dystrophin linker (UDL) has similar stability as that of dystrophin tandem CH domain. Dystrophin tandem CH domain binds to F-actin ∼30 times weaker than that of utrophin. After linker swapping, DUL has twice the binding affinity as that of dystrophin tandem CH domain. Similarly, UDL has half the binding affinity as that of utrophin tandem CH domain. However, changes in binding free energies due to linker swapping are much lower by an order of magnitude compared to the corresponding changes in unfolding free energies. These results indicate that the linker region determines primarily the structural stability of tandem CH domains rather than their actin-binding affinity.


Subject(s)
Actins/metabolism , Calcium-Binding Proteins/metabolism , Dystrophin/metabolism , Microfilament Proteins/metabolism , Utrophin/metabolism , Actins/chemistry , Calcium-Binding Proteins/chemistry , Dystrophin/chemistry , Microfilament Proteins/chemistry , Protein Binding/physiology , Protein Stability , Protein Structure, Secondary , Utrophin/chemistry , Calponins
8.
J Clin Pharmacol ; 55(6): 698-707, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25651188

ABSTRACT

SMT C1100 is a small molecule utrophin modulator in development to treat Duchenne muscular dystrophy. This study evaluated the safety, tolerability, and pharmacokinetics of SMT C1100 in healthy volunteers. This double-blind, placebo-controlled Phase 1 study comprised: Part 1, an escalating, single-dose with/without fasting involving 50 mg/kg, 100 mg/kg, 200 mg/kg, and 400 mg/kg doses; and Part 2, a multiple 10 day dose evaluation involving 100 mg/kg bid and 200 mg/kg bid doses. Adverse events were recorded. SMT C1100 was absorbed rapidly following single and multiple oral doses, with median tmax attained within 2-3.5 hour across all doses. Considerable variability of pharmacokinetic parameters was noted among subjects. Following single doses, systemic exposure increased in a sub-proportional manner, with the 8.0-fold dose increment resulting in 2.7- and 2.4-fold increases in AUC0-∞ and Cmax , respectively. AUC0-∞ and Cmax were estimated as 4.2- and 4.8-fold greater, respectively, following food. Systemic exposure reduced upon repeat dosing with steady-state concentrations achieved within 3-5 days of multiple bid dosing. No serious or severe adverse events were reported. SMT C1100 was safe and well tolerated with plasma concentrations achieved sufficient to cause a 50% increase in concentrations of utrophin in cells in vitro.


Subject(s)
Arginine/analogs & derivatives , Benzothiazoles/chemistry , Benzoxazoles/administration & dosage , Benzoxazoles/adverse effects , Benzoxazoles/pharmacokinetics , Muscular Dystrophy, Duchenne/drug therapy , Utrophin/biosynthesis , Administration, Oral , Adolescent , Adult , Area Under Curve , Arginine/chemistry , Dose-Response Relationship, Drug , Double-Blind Method , Drug Administration Schedule , Half-Life , Healthy Volunteers , Humans , Male , Middle Aged , No-Observed-Adverse-Effect Level , Utrophin/chemistry , Young Adult
9.
Proteins ; 83(4): 696-710, 2015 Apr.
Article in English | MEDLINE | ID: mdl-25620004

ABSTRACT

Dystrophin is a long, rod-shaped cytoskeleton protein implicated in muscular dystrophy (MDys). Utrophin is the closest autosomal homolog of dystrophin. Both proteins have N-terminal actin-binding domain (N-ABD), a central rod domain and C-terminal region. N-ABD, composed of two calponin homology (CH) subdomains joined by a helical linker, harbors a few disease causing missense mutations. Although the two proteins share considerable homology (>72%) in N-ABD, recent structural and biochemical studies have shown that there are significant differences (including stability, mode of actin-binding) and their functions are not completely interchangeable. In this investigation, we have used extensive molecular dynamics simulations to understand the differences and the similarities of these two proteins, along with another actin-binding protein, fimbrin. In silico mutations were performed to identify two key residues that might be responsible for the dynamical difference between the molecules. Simulation points to the inherent flexibility of the linker region, which adapts different conformations in the wild type dystrophin. Mutations T220V and G130D in dystrophin constrain the flexibility of the central helical region, while in the two known disease-causing mutants, K18N and L54R, the helicity of the region is compromised. Phylogenetic tree and sequence analysis revealed that dystrophin and utrophin genes have probably originated from the same ancestor. The investigation would provide insight into the functional diversity of two closely related proteins and fimbrin, and contribute to our understanding of the mechanism of MDys.


Subject(s)
Binding Sites , Dystrophin , Membrane Glycoproteins , Microfilament Proteins , Utrophin , Actins/chemistry , Actins/metabolism , Amino Acid Sequence , Animals , Dystrophin/chemistry , Dystrophin/classification , Dystrophin/metabolism , Humans , Membrane Glycoproteins/chemistry , Membrane Glycoproteins/metabolism , Microfilament Proteins/chemistry , Microfilament Proteins/metabolism , Molecular Dynamics Simulation , Molecular Sequence Data , Muscular Dystrophies , Mutation , Phylogeny , Protein Binding , Protein Multimerization , Protein Structure, Secondary , Sequence Alignment , Utrophin/chemistry , Utrophin/metabolism
10.
Biochemistry ; 53(14): 2209-11, 2014 Apr 15.
Article in English | MEDLINE | ID: mdl-24678640

ABSTRACT

Domains are in general less stable than the corresponding full-length proteins. Human utrophin tandem calponin-homology (CH) domain seems to be an exception. Reversible, equilibrium denaturant melts indicate that the isolated C-terminal domain (CH2) is thermodynamically more stable than the tandem CH domain. Thermal melts show that CH2 unfolds at a temperature higher than that at which the full-length protein unfolds. Stopped-flow kinetics indicates that CH2 unfolds slower than the full-length protein, indicating its higher kinetic stability. Thus, the utrophin tandem CH domain may be one of the few proteins in which an isolated domain is more stable than the corresponding full-length protein.


Subject(s)
Calcium-Binding Proteins/chemistry , Microfilament Proteins/chemistry , Utrophin/chemistry , Area Under Curve , Chromatography, Gel , Kinetics , Thermodynamics , Calponins
11.
Biochemistry ; 53(11): 1801-9, 2014 Mar 25.
Article in English | MEDLINE | ID: mdl-24628267

ABSTRACT

The structural determinants of the actin binding function of tandem calponin-homology (CH) domains are poorly understood, particularly the role of individual domains. We determined the actin binding affinity of isolated CH domains from human utrophin and compared them with the affinity of the full-length tandem CH domain. Traditional cosedimentation assays indicate that the C-terminal CH2 domain binds to F-actin much weaker than the full-length tandem CH domain. The N-terminal CH1 domain is less stable and undergoes severe protein aggregation; therefore, traditional actin cosedimentation assays could not be used. To address this, we have developed a folding-upon-binding method. We refolded the CH1 domain from its unfolded state in the presence of F-actin. This results in a competition between actin binding and aggregation. A differential centrifugation technique was used to distinguish actin binding from aggregation. Low-speed centrifugation pelleted CH1 aggregates, but not F-actin or its bound protein. Subsequent high-speed centrifugation resulted in the cosedimentation of bound CH1 along with F-actin. The CH1 domain binds to F-actin with an affinity similar to that of the full-length tandem CH domain, unlike the CH2 domain. The actin binding cooperativity between the two domains was quantitatively calculated from the association constants of the full-length tandem CH domain and its CH domains, and found to be much smaller than the association constant of the CH1 domain alone. These results indicate that the actin binding affinity of the utrophin tandem CH domain is primarily determined by its CH1 domain, when compared to that of its CH2 domain or the cooperativity between the two CH domains.


Subject(s)
Actins/metabolism , Calcium-Binding Proteins/chemistry , Calcium-Binding Proteins/metabolism , Microfilament Proteins/chemistry , Microfilament Proteins/metabolism , Utrophin/chemistry , Utrophin/metabolism , Actins/chemistry , Animals , Binding Sites/physiology , Cattle , Crystallography, X-Ray , Humans , Protein Binding , Protein Structure, Tertiary/physiology , Sequence Homology, Amino Acid , Calponins
12.
J Struct Biol ; 186(3): 392-401, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24657228

ABSTRACT

The spectrin superfamily is composed of proteins involved in cytolinker functions. Their main structural feature is a large central subdomain with numerous repeats folded in triple helical coiled-coils. Their similarity of sequence was considered to be low without detailed quantification of the intra- and intermolecular levels. Among the superfamily, we considered as essential to propose an overview of the surface properties of all the repeats of the five proteins of the spectrin family, namely α- and ß-spectrins, α-actinin, dystrophin and utrophin. Therefore, the aim of this work was to obtain a quantitative comparison of all the repeats at both the primary sequence and the three-dimensional levels. For that purpose, we applied homology modelling methods to obtain structural models for successive and overlapping tandem repeats of the human erythrocyte α- and ß-spectrins and utrophin, as previously undertaken for dystrophin, and we used the known structure of α-actinin. The matrix calculation of the pairwise similarities of all the repeat sequences and the electrostatic and hydrophobic surface properties throughout the protein family support the view that spectrins and α-actinin on one hand and utrophin and dystrophin on the other hand share some structural similarities, but a detailed molecular characterisation highlights substantial differences. The repeats within the family are far from identical, which is consistent with their multiple interactions with different cellular partners, including proteins and membrane lipids.


Subject(s)
Spectrin/chemistry , Structural Homology, Protein , Amino Acid Sequence , Exons , Hydrophobic and Hydrophilic Interactions , Isoelectric Point , Molecular Sequence Data , Protein Conformation , Repetitive Sequences, Amino Acid , Static Electricity , Utrophin/chemistry
13.
BMC Mol Biol ; 14: 3, 2013 Jan 30.
Article in English | MEDLINE | ID: mdl-23363418

ABSTRACT

BACKGROUND: Duchenne muscular dystrophy (DMD) is the most common X-linked muscle degenerative disease and it is due to the absence of the cytoskeletal protein dystrophin. Currently there is no effective treatment for DMD. Among the different strategies for achieving a functional recovery of the dystrophic muscle, the upregulation of the dystrophin-related gene utrophin is becoming more and more feasible. RESULTS: We have previously shown that the zinc finger-based artificial transcriptional factor "Jazz" corrects the dystrophic pathology in mdx mice by upregulating utrophin gene expression. Here we describe a novel artificial transcription factor, named "UtroUp", engineered to further improve the DNA-binding specificity. UtroUp has been designed to recognise an extended DNA target sequence on both the human and mouse utrophin gene promoters. The UtroUp DNA-binding domain contains six zinc finger motifs in tandem, which is able to recognise an 18-base-pair DNA target sequence that statistically is present only once in the human genome. To achieve a higher transcriptional activation, we coupled the UtroUp DNA-binding domain with the innovative transcriptional activation domain, which was derived from the multivalent adaptor protein Che-1/AATF. We show that the artificial transcription factor UtroUp, due to its six zinc finger tandem motif, possesses a low dissociation constant that is consistent with a strong affinity/specificity toward its DNA-binding site. When expressed in mammalian cell lines, UtroUp promotes utrophin transcription and efficiently accesses active chromatin promoting accumulation of the acetylated form of histone H3 in the utrophin promoter locus. CONCLUSIONS: This novel artificial molecule may represent an improved platform for the development of future applications in DMD treatment.


Subject(s)
Muscular Dystrophy, Duchenne/metabolism , Promoter Regions, Genetic , Transcription Factors/chemistry , Transcription Factors/metabolism , Up-Regulation , Utrophin/genetics , Utrophin/metabolism , Animals , Base Sequence , Binding Sites , Gene Expression Regulation , Humans , Mice , Muscular Dystrophy, Duchenne/genetics , Transcription Factors/genetics , Utrophin/chemistry , Zinc Fingers
14.
PLoS One ; 7(7): e40066, 2012.
Article in English | MEDLINE | ID: mdl-22911693

ABSTRACT

Dystrophin and utrophin link the F-actin cytoskeleton to the cell membrane via an associated glycoprotein complex. This functionality results from their domain organization having an N-terminal actin-binding domain followed by multiple spectrin-repeat domains and then C-terminal protein-binding motifs. Therapeutic strategies to replace defective dystrophin with utrophin in patients with Duchenne muscular dystrophy require full-characterization of both these proteins to assess their degree of structural and functional equivalence. Here the high resolution structures of the first spectrin repeats (N-terminal repeat 1) from both dystrophin and utrophin have been determined by x-ray crystallography. The repeat structures both display a three-helix bundle fold very similar to one another and to homologous domains from spectrin, α-actinin and plectin. The utrophin and dystrophin repeat structures reveal the relationship between the structural domain and the canonical spectrin repeat domain sequence motif, showing the compact structural domain of spectrin repeat one to be extended at the C-terminus relative to its previously defined sequence repeat. These structures explain previous in vitro biochemical studies in which extending dystrophin spectrin repeat domain length leads to increased protein stability. Furthermore we show that the first dystrophin and utrophin spectrin repeats have no affinity for F-actin in the absence of other domains.


Subject(s)
Dystrophin/chemistry , Spectrin/chemistry , Utrophin/chemistry , Actins/chemistry , Actins/metabolism , Amino Acid Sequence , Crystallography, X-Ray , Dystrophin/metabolism , Models, Molecular , Molecular Sequence Data , Protein Binding , Protein Interaction Domains and Motifs , Protein Structure, Secondary , Protein Structure, Tertiary , Sequence Alignment , Spectrin/metabolism , Utrophin/metabolism
15.
J Mol Biol ; 420(1-2): 87-98, 2012 Jun 29.
Article in English | MEDLINE | ID: mdl-22504225

ABSTRACT

We have used time-resolved phosphorescence anisotropy (TPA) of actin to evaluate domains of dystrophin and utrophin, with implications for gene therapy in muscular dystrophy. Dystrophin and its homolog utrophin bind to cytoskeletal actin to form mechanical linkages that prevent muscular damage. Because these proteins are too large for most gene therapy vectors, much effort is currently devoted to smaller constructs. We previously used TPA to show that both dystrophin and utrophin have a paradoxical effect on actin rotational dynamics-restricting amplitude while increasing rate, thus increasing resilience, with utrophin more effective than dystrophin. Here, we have evaluated individual domains of these proteins. We found that a "mini-dystrophin," lacking one of the two actin-binding domains, is less effective than dystrophin in regulating actin dynamics, correlating with its moderate effectiveness in rescuing the dystrophic phenotype in mice. In contrast, we found that a "micro-utrophin," with more extensive internal deletions, is as effective as full-length dystrophin in the regulation of actin dynamics. Each of utrophin's actin-binding domains promotes resilience in actin, while dystrophin constructs require the presence of both actin-binding domains and the C-terminal domain for full function. This work supports the use of a utrophin template for gene or protein therapy designs. Resilience of the actin-protein complex, measured by TPA, correlates remarkably well with previous reports of functional rescue by dystrophin and utrophin constructs in mdx mice. We propose the use of TPA as an in vitro method to aid in the design and testing of emerging gene therapy constructs.


Subject(s)
Actins/chemistry , Drug Design , Dystrophin/chemistry , Molecular Dynamics Simulation , Utrophin/chemistry , Animals , Fluorescence Polarization , Genetic Therapy/methods , Genetic Vectors , Mice , Muscular Dystrophies/therapy
16.
Proteins ; 80(5): 1377-92, 2012 May.
Article in English | MEDLINE | ID: mdl-22275054

ABSTRACT

Muscular dystrophy (MD) is the most common genetic lethal disorder in children. Mutations in dystrophin trigger the most common form of MD, Duchenne, and its allelic variant Becker MD. Utrophin is the closest homologue and has been shown to compensate for the loss of dystrophin in human disease animal models. However, the structural and functional similarities and differences between utrophin and dystrophin are less understood. Both proteins interact with actin through their N-terminal actin-binding domain (N-ABD). In this study, we examined the thermodynamic stability and aggregation of utrophin N-ABD and compared with that of dystrophin. Our results show that utrophin N-ABD has spectroscopic properties similar to dystrophin N-ABD. However, utrophin N-ABD has decreased denaturant and thermal stability, unfolds faster, and is correspondingly more susceptible to proteolysis, which might account for its decreased in vivo half-life compared to dystrophin. In addition, utrophin N-ABD aggregates to a lesser extent compared with dystrophin N-ABD, contrary to the general behavior of proteins in which decreased stability enhances protein aggregation. Despite these differences in stability and aggregation, both proteins exhibit deleterious effects of mutations. When utrophin N-ABD mutations analogous in position to the dystrophin disease-causing mutations were generated, they behaved similarly to dystrophin mutants in terms of decreased stability and the formation of cross-ß aggregates, indicating a possible role for utrophin mutations in disease mechanisms.


Subject(s)
Dystrophin/chemistry , Microfilament Proteins/chemistry , Utrophin/chemistry , Amino Acid Sequence , Binding Sites , Calcium-Binding Proteins/chemistry , Circular Dichroism , Dystrophin/genetics , Dystrophin/metabolism , Humans , Kinetics , Microfilament Proteins/metabolism , Models, Molecular , Molecular Sequence Data , Mutation , Protein Stability , Protein Unfolding , Sequence Alignment , Temperature , Thermodynamics , Utrophin/genetics , Utrophin/metabolism , Calponins
17.
Proc Natl Acad Sci U S A ; 108(31): 12729-33, 2011 Aug 02.
Article in English | MEDLINE | ID: mdl-21768337

ABSTRACT

We have used site-directed spin labeling and pulsed electron paramagnetic resonance to resolve a controversy concerning the structure of the utrophin-actin complex, with implications for the pathophysiology of muscular dystrophy. Utrophin is a homolog of dystrophin, the defective protein in Duchenne and Becker muscular dystrophies, and therapeutic utrophin derivatives are currently being developed. Both proteins have a pair of N-terminal calponin homology (CH) domains that are important for actin binding. Although there is a crystal structure of the utrophin actin-binding domain, electron microscopy of the actin-bound complexes has produced two very different structural models, in which the CH domains are in open or closed conformations. We engineered a pair of labeling sites in the CH domains of utrophin and used dipolar electron-electron resonance to determine the distribution of interdomain distances with high resolution. We found that the two domains are flexibly connected in solution, indicating a dynamic equilibrium between two distinct open structures. Upon actin binding, the two domains become dramatically separated and ordered, indicating a transition to a single open and extended conformation. There is no trace of this open conformation of utrophin in the absence of actin, providing strong support for an induced-fit model of actin binding.


Subject(s)
Actins/chemistry , Models, Molecular , Protein Structure, Tertiary , Utrophin/chemistry , Actins/metabolism , Animals , Binding Sites/genetics , Binding, Competitive , Circular Dichroism , Electron Spin Resonance Spectroscopy , Kinetics , Mice , Microscopy, Electron , Mutation , Protein Binding , Protein Conformation , Protein Structure, Secondary , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Utrophin/genetics , Utrophin/metabolism
18.
Hum Mol Genet ; 20(15): 2955-63, 2011 Aug 01.
Article in English | MEDLINE | ID: mdl-21558423

ABSTRACT

Duchenne muscular dystrophy (DMD) is a deadly and common childhood disease caused by mutations that disrupt dystrophin protein expression. Several miniaturized dystrophin/utrophin constructs are utilized for gene therapy, and while these constructs have shown promise in mouse models, the functional integrity of these proteins is not well described. Here, we compare the biophysical properties of full-length dystrophin and utrophin with therapeutically relevant miniaturized constructs using an insect cell expression system. Full-length utrophin, like dystrophin, displayed a highly cooperative melting transition well above 37°C. Utrophin constructs involving N-terminal, C-terminal or internal deletions were remarkably stable, showing cooperative melting transitions identical to full-length utrophin. In contrast, large dystrophin deletions from either the N- or C-terminus exhibited variable stability, as evidenced by melting transitions that differed by 20°C. Most importantly, deletions in the large central rod domain of dystrophin resulted in a loss of cooperative unfolding with increased propensity for aggregation. Our results suggest that the functionality of dystrophin therapeutics based on mini- or micro-constructs may be compromised by the presence of non-native protein junctions that result in protein misfolding, instability and aggregation.


Subject(s)
Dystrophin/genetics , Dystrophin/metabolism , Utrophin/genetics , Utrophin/metabolism , Animals , Cell Line , Circular Dichroism , Dystrophin/chemistry , Humans , Mice , Protein Stability , Sequence Deletion/genetics , Sequence Deletion/physiology , Solubility , Spodoptera , Utrophin/chemistry
19.
Proc Natl Acad Sci U S A ; 108(2): 762-7, 2011 Jan 11.
Article in English | MEDLINE | ID: mdl-21187385

ABSTRACT

Duchenne muscular dystrophy (DMD) is caused by mutations in dystrophin and the subsequent disruption of the dystrophin-associated protein complex (DAPC). Utrophin is a dystrophin homolog expressed at high levels in developing muscle that is an attractive target for DMD therapy. Here we show that the extracellular matrix protein biglycan regulates utrophin expression in immature muscle and that recombinant human biglycan (rhBGN) increases utrophin expression in cultured myotubes. Systemically delivered rhBGN up-regulates utrophin at the sarcolemma and reduces muscle pathology in the mdx mouse model of DMD. RhBGN treatment also improves muscle function as judged by reduced susceptibility to eccentric contraction-induced injury. Utrophin is required for the rhBGN therapeutic effect. Several lines of evidence indicate that biglycan acts by recruiting utrophin protein to the muscle membrane. RhBGN is well tolerated in animals dosed for as long as 3 months. We propose that rhBGN could be a therapy for DMD.


Subject(s)
Biglycan/chemistry , Gene Expression Regulation , Muscular Dystrophy, Animal/therapy , Sarcolemma/metabolism , Utrophin/chemistry , Animals , Biglycan/metabolism , Disease Models, Animal , Humans , Mice , Mice, Inbred mdx , Muscles/metabolism , Recombinant Proteins/therapeutic use , Reverse Transcriptase Polymerase Chain Reaction , Up-Regulation
20.
J Biomed Biotechnol ; 2011: 904547, 2011.
Article in English | MEDLINE | ID: mdl-22228988

ABSTRACT

Utrophin and dystrophin present two large proteins that link the intracellular actin cytoskeleton to the extracellular matrix via the C-terminal-associated protein complex. Here we describe a novel short N-terminal isoform of utrophin and its protein product in various rat tissues (N-utro, 62 kDa, amino acids 1-539, comprising the actin-binding domain plus the first two spectrin repeats). Using different N-terminal recombinant utrophin fragments, we show that actin binding exhibits pronounced negative cooperativity (affinity constants K(1) = -5 × 10(6) and K(2) =-1 × 10(5 )M(-1)) and is Ca(2+)-insensitive. Expression of the different fragments in COS7 cells and in myotubes indicates that the actin-binding domain alone binds exclusively to actin filaments. The recombinant N-utro analogue binds in vitro to actin and in the cells associates to the membranes. The results indicate that N-utro may be responsible for the anchoring of the cortical actin cytoskeleton to the membranes in muscle and other tissues.


Subject(s)
Actins/metabolism , Organ Specificity , Utrophin/chemistry , Utrophin/metabolism , Animals , Biological Assay , COS Cells , Calcium/metabolism , Calmodulin/metabolism , Chlorocebus aethiops , Circular Dichroism , Dystrophin/chemistry , Dystrophin/metabolism , Gene Expression Regulation , Humans , Immunoblotting , Muscle Fibers, Skeletal/cytology , Muscle Fibers, Skeletal/metabolism , Protein Binding , Protein Isoforms/chemistry , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Structure, Tertiary , Protein Transport , RNA, Messenger/genetics , RNA, Messenger/metabolism , Rats , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Utrophin/genetics
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