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1.
Nat Commun ; 13(1): 348, 2022 01 17.
Article in English | MEDLINE | ID: mdl-35039506

ABSTRACT

2-(2-Phenylethyl)chromones (PECs) are the principal constituents contributing to the distinctive fragrance of agarwood. How PECs are biosynthesized is currently unknown. In this work, we describe a diarylpentanoid-producing polyketide synthase (PECPS) identified from Aquilaria sinensis. Through biotransformation experiments using fluorine-labeled substrate, transient expression of PECPS in Nicotiana benthamiana, and knockdown of PECPS expression in A. sinensis calli, we demonstrate that the C6-C5-C6 scaffold of diarylpentanoid is the common precursor of PECs, and PECPS plays a crucial role in PECs biosynthesis. Crystal structure (1.98 Å) analyses and site-directed mutagenesis reveal that, due to its small active site cavity (247 Å3), PECPS employs a one-pot formation mechanism including a "diketide-CoA intermediate-released" step for the formation of the C6-C5-C6 scaffold. The identification of PECPS, the pivotal enzyme of PECs biosynthesis, provides insight into not only the feasibility of overproduction of pharmaceutically important PECs using metabolic engineering approaches, but also further exploration of how agarwood is formed.


Subject(s)
Biosynthetic Pathways , Flavonoids/metabolism , Polyketide Synthases/metabolism , Thymelaeaceae/enzymology , Wood/enzymology , Biocatalysis , Biotransformation , Cloning, Molecular , Flavonoids/chemistry , Models, Molecular , Mutation/genetics , Polyketide Synthases/genetics , Nicotiana/enzymology
2.
Genes (Basel) ; 11(5)2020 04 28.
Article in English | MEDLINE | ID: mdl-32353985

ABSTRACT

Dalbergia odorifera, a critically endangered tree species, produces heartwood containing a vast variety of flavonoids. This heartwood, also known as Chinese rosewood, has high economic and medicinal value, but its formation takes several decades. In this study, we showed that discolored wood induced by pruning displays similar color, structure, and flavonoids content to those of natural heartwood, suggesting that wounding is an efficient method for inducing flavonoid production in D. odorifera. Transcriptome analysis was performed to investigate the mechanism underlying wounding-induced flavonoids production in D. odorifera heartwood. Wounding upregulated the expression of 90 unigenes, which covered 19 gene families of the phenylpropanoid and flavonoid pathways, including PAL, C4H, 4CL, CHS, CHI, 6DCS, F3'5'H, F3H, FMO, GT, PMAT, CHOMT, IFS, HI4'OMT, HID, IOMT, I2'H, IFR, and I3'H. Furthermore, 47 upregulated unigenes were mapped to the biosynthesis pathways for five signal molecules (ET, JA, ABA, ROS, and SA). Exogenous application of these signal molecules resulted in the accumulation of flavonoids in cell suspensions of D. odorifera, supporting their role in wounding-induced flavonoid production. Insights from this study will help develop new methods for rapidly inducing the formation of heartwood with enhanced medicinal value.


Subject(s)
Dalbergia/genetics , Flavonoids/genetics , Gene Expression Profiling , Wood/enzymology , Dalbergia/growth & development , Flavonoids/metabolism , Plant Extracts/genetics , Trees/genetics , Trees/growth & development , Wood/genetics , Wounds and Injuries/genetics
3.
J Theor Biol ; 456: 249-260, 2018 11 07.
Article in English | MEDLINE | ID: mdl-30099080

ABSTRACT

Agarwood originating from Aquilaria sinensis contains sesquiterpenoids that have tremendous commercial value in the pharmaceutical and fragrance industries. Aquilaria sinensis sesquiterpene synthase (AsSTS) is the key enzyme in the agarwood biosynthesis pathway, and its activity directly affects the chemical composition of agarwood; however, its role in species evolution remains unclear. In this study, we performed an evolutionary analysis based on 68 plant sesquiterpene synthase (STS) genes and further structural characterization of the gene encoding AsSTS to explore its molecular evolution. The phylogenetic tree indicated that these STS genes included three subfamilies. Additionally, 23 positively selected sites were detected, and no influence of recombination was found. Furthermore, the protein structure of AsSTS was characterized using primary sequence and structural analyses as having a functional active site lid domain, a substrate binding site, two post-translational modification sites and four conserved motifs. Finally, most virtual mutations of positively selected sites could be stabilized against thermal denaturation by a decrease in free energy, and three virtual mutations (D403R, G470Q and S538K) were shown to play important roles in the function and stability of AsSTS. The molecular evolutionary analysis of plant STSs provides essential clues for further experimental site-directed mutagenesis and molecular modification of AsSTS.


Subject(s)
Alkyl and Aryl Transferases/genetics , Evolution, Molecular , Sesquiterpenes/metabolism , Thymelaeaceae/genetics , Wood/genetics , Alkyl and Aryl Transferases/chemistry , Computational Biology/methods , Databases, Genetic , Databases, Protein , Phylogeny , Structure-Activity Relationship , Thymelaeaceae/enzymology , Wood/enzymology
4.
New Phytol ; 217(4): 1551-1565, 2018 03.
Article in English | MEDLINE | ID: mdl-29243818

ABSTRACT

Metacaspases (MCs) are cysteine proteases that are implicated in programmed cell death of plants. AtMC9 (Arabidopsis thaliana Metacaspase9) is a member of the Arabidopsis MC family that controls the rapid autolysis of the xylem vessel elements, but its downstream targets in xylem remain uncharacterized. PttMC13 and PttMC14 were identified as AtMC9 homologs in hybrid aspen (Populus tremula × tremuloides). A proteomic analysis was conducted in xylem tissues of transgenic hybrid aspen trees which carried either an overexpression or an RNA interference construct for PttMC13 and PttMC14. The proteomic analysis revealed modulation of levels of both previously known targets of metacaspases, such as Tudor staphylococcal nuclease, heat shock proteins and 14-3-3 proteins, as well as novel proteins, such as homologs of the PUTATIVE ASPARTIC PROTEASE3 (PASPA3) and the cysteine protease RD21 by PttMC13 and PttMC14. We identified here the pathways and processes that are modulated by PttMC13 and PttMC14 in xylem tissues. In particular, the results indicate involvement of PttMC13 and/or PttMC14 in downstream proteolytic processes and cell death of xylem elements. This work provides a valuable reference dataset on xylem-specific metacaspase functions for future functional and biochemical analyses.


Subject(s)
Caspases/metabolism , Populus/enzymology , Trees/enzymology , Wood/enzymology , Amino Acid Sequence , Caspases/genetics , Gene Expression Regulation, Plant , Genes, Plant , Multigene Family , Peptides/chemistry , Peptides/metabolism , Plant Proteins/chemistry , Plant Proteins/genetics , Plant Proteins/metabolism , Populus/genetics , Proteomics , Xylem/cytology , Xylem/genetics , Xylem/metabolism
5.
Biomacromolecules ; 18(11): 3687-3694, 2017 Nov 13.
Article in English | MEDLINE | ID: mdl-28954511

ABSTRACT

Layer-by-layer peeling of surface molecules of native cellulose microfibrils was performed using a repeated sequential process of 2,2,6,6-tetramethylpiperidine-1-oxyl radical-mediated oxidation followed by hot alkali extraction. Both highly crystalline algal and tunicate celluloses and low-crystalline cotton and wood celluloses were investigated. Initially, the C6-hydroxy groups of the outermost surface molecules of each algal cellulose microfibril facing the exterior had the gauche-gauche (gg) conformation, whereas those facing the interior had the gauche-trans (gt) conformation. All the other C6-hydroxy groups of the cellulose molecules inside the microfibrils contributing to crystalline cellulose I had the trans-gauche (tg) conformation. After surface peeling, the originally second-layer molecules from the microfibril surface became the outermost surface molecules, and the original tg conformation changed to gg and gt conformations. The plant cellulose microfibrils likely had disordered structures for both the outermost surface and second-layer molecules, as demonstrated using the same layer-by-layer peeling technique.


Subject(s)
Cell Wall/chemistry , Cellulose/chemistry , Microfibrils/chemistry , Wood/chemistry , Animals , Cell Wall/enzymology , Cyclic N-Oxides/chemistry , Molecular Conformation , Oxidation-Reduction , Urochordata/enzymology , Wood/enzymology
6.
Can J Microbiol ; 63(10): 841-850, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28793203

ABSTRACT

Wood decomposition is a key step of the terrestrial carbon cycle and is of economic importance. It is essentially a microbiological process performed by fungi and to an unknown extent by bacteria. To gain access to the genes expressed by the diverse microbial communities participating in wood decay, we developed an RNA extraction protocol from this recalcitrant material rich in polysaccharides and phenolic compounds. This protocol was implemented on 22 wood samples representing as many tree species from 11 plant families in the Angiosperms and Gymnosperms. RNA was successfully extracted from all samples and converted into cDNAs from which were amplified both fungal and bacterial protein coding genes, including genes encoding hydrolytic enzymes participating in lignocellulose hydrolysis. This protocol applicable to a wide range of decomposing wood types represents a first step towards a metatranscriptomic analysis of wood degradation under natural conditions.


Subject(s)
Fungi/enzymology , Gene Expression Profiling , Lignin/metabolism , RNA/isolation & purification , Trees/classification , DNA, Complementary/chemistry , DNA, Complementary/genetics , Fungi/genetics , Hydrolysis , RNA/genetics , Sequence Analysis, DNA , Trees/enzymology , Trees/genetics , Wood/classification , Wood/enzymology , Wood/genetics
7.
J Exp Bot ; 68(13): 3529-3539, 2017 06 15.
Article in English | MEDLINE | ID: mdl-28645173

ABSTRACT

The contribution of transcriptional and post-transcriptional regulation to modifying carbon allocation to developing wood of trees is not well defined. To clarify the role of transcriptional regulation, the enzyme activity patterns of eight central primary metabolism enzymes across phloem, cambium, and developing wood of aspen (Populus tremula L.) were compared with transcript levels obtained by RNA sequencing of sequential stem sections from the same trees. Enzymes were selected on the basis of their importance in sugar metabolism and in linking primary metabolism to lignin biosynthesis. Existing enzyme assays were adapted to allow measurements from ~1 mm3 sections of dissected stem tissue. These experiments provided high spatial resolution of enzyme activity changes across different stages of wood development, and identified the gene transcripts probably responsible for these changes. In most cases, there was a clear positive relationship between transcripts and enzyme activity. During secondary cell wall formation, the increases in transcript levels and enzyme activities also matched with increased levels of glucose, fructose, hexose phosphates, and UDP-glucose, emphasizing an important role for transcriptional regulation in carbon allocation to developing aspen wood. These observations corroborate the efforts to increase carbon allocation to wood by engineering gene regulatory networks.


Subject(s)
Carbon/metabolism , Gene Expression Regulation, Plant , Plant Proteins/genetics , Populus/genetics , Transcription, Genetic , Cambium/enzymology , Cambium/growth & development , Phloem/enzymology , Phloem/growth & development , Plant Proteins/metabolism , Populus/enzymology , Wood/enzymology , Wood/growth & development
8.
Sci Rep ; 7: 40262, 2017 01 10.
Article in English | MEDLINE | ID: mdl-28071716

ABSTRACT

Lytic polysaccharide monooxygenases (LPMOs) are a class of powerful oxidative enzymes that breakdown recalcitrant polysaccharides such as cellulose. Here we investigate the action of LPMOs on cellulose fibers. After enzymatic treatment and dispersion, LPMO-treated fibers show intense fibrillation. Cellulose structure modifications visualized at different scales indicate that LPMO creates nicking points that trigger the disintegration of the cellulose fibrillar structure with rupture of chains and release of elementary nanofibrils. Investigation of LPMO action using solid-state NMR provides direct evidence of modification of accessible and inaccessible surfaces surrounding the crystalline core of the fibrils. The chains breakage likely induces modifications of the cellulose network and weakens fibers cohesion promoting their disruption. Besides the formation of new initiation sites for conventional cellulases, this work provides the first evidence of the direct oxidative action of LPMOs with the mechanical weakening of the cellulose ultrastructure. LPMOs can be viewed as promising biocatalysts for enzymatic modification or degradation of cellulose fibers.


Subject(s)
Cellulose/metabolism , Mixed Function Oxygenases/metabolism , Polysaccharides/metabolism , Cellulose/chemistry , Cellulose/ultrastructure , Wood/chemistry , Wood/enzymology
9.
New Phytol ; 214(2): 796-807, 2017 Apr.
Article in English | MEDLINE | ID: mdl-28032636

ABSTRACT

Carbon for cellulose biosynthesis is derived from sucrose. Cellulose is synthesized from uridine 5'-diphosphoglucose (UDP-glucose), but the enzyme(s) responsible for the initial sucrose cleavage and the source of UDP-glucose for cellulose biosynthesis in developing wood have not been defined. We investigated the role of CYTOSOLIC INVERTASEs (CINs) during wood formation in hybrid aspen (Populus tremula × tremuloides) and characterized transgenic lines with reduced CIN activity during secondary cell wall biosynthesis. Suppression of CIN activity by 38-55% led to a 9-13% reduction in crystalline cellulose. The changes in cellulose were reflected in reduced diameter of acid-insoluble cellulose microfibrils and increased glucose release from wood upon enzymatic digestion of cellulose. Reduced CIN activity decreased the amount of the cellulose biosynthesis precursor UDP-glucose in developing wood, pointing to the likely cause of the cellulose phenotype. The findings suggest that CIN activity has an important role in the cellulose biosynthesis of trees, and indicate that cellulose biosynthesis in wood relies on a quantifiable UDP-glucose pool. The results also introduce a concept of altering cellulose microfibril properties by modifying substrate supply to cellulose biosynthesis.


Subject(s)
Cellulose/biosynthesis , Cytosol/enzymology , Populus/enzymology , Wood/enzymology , beta-Fructofuranosidase/metabolism , Crystallization , Gene Expression Regulation, Plant , Glucose/metabolism , Hydrogen-Ion Concentration , Metabolome , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , RNA Interference , RNA, Messenger/genetics , RNA, Messenger/metabolism , Solubility , Substrate Specificity , Transcriptome/genetics , Trees/genetics
10.
New Phytol ; 205(2): 666-81, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25307149

ABSTRACT

Certain xylanases from family GH10 are highly expressed during secondary wall deposition, but their function is unknown. We carried out functional analyses of the secondary-wall specific PtxtXyn10A in hybrid aspen (Populus tremula × tremuloides). PtxtXyn10A function was analysed by expression studies, overexpression in Arabidopsis protoplasts and by downregulation in aspen. PtxtXyn10A overexpression in Arabidopsis protoplasts resulted in increased xylan endotransglycosylation rather than hydrolysis. In aspen, the enzyme was found to be proteolytically processed to a 68 kDa peptide and residing in cell walls. Its downregulation resulted in a corresponding decrease in xylan endotransglycosylase activity and no change in xylanase activity. This did not alter xylan molecular weight or its branching pattern but affected the cellulose-microfibril angle in wood fibres, increased primary growth (stem elongation, leaf formation and enlargement) and reduced the tendency to form tension wood. Transcriptomes of transgenic plants showed downregulation of tension wood related genes and changes in stress-responsive genes. The data indicate that PtxtXyn10A acts as a xylan endotransglycosylase and its main function is to release tensional stresses arising during secondary wall deposition. Furthermore, they suggest that regulation of stresses in secondary walls plays a vital role in plant development.


Subject(s)
Cell Wall/enzymology , Populus/enzymology , Wood/cytology , Xylosidases/metabolism , Arabidopsis/cytology , Arabidopsis/genetics , Arabidopsis/metabolism , Cell Wall/metabolism , Cellulose/metabolism , Chimera , Gene Expression Regulation, Plant , Hydrolysis , Microfibrils , Multigene Family , Plant Proteins/genetics , Plant Proteins/metabolism , Plants, Genetically Modified , Populus/cytology , Populus/genetics , Wood/chemistry , Wood/enzymology , Xylans/metabolism , Xylem/cytology , Xylem/growth & development , Xylem/metabolism , Xylosidases/genetics
11.
Physiol Plant ; 154(2): 283-96, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25393559

ABSTRACT

We cloned a Cinnamoyl-CoA Reductase gene (BpCCR1) from an apical meristem and first internode of Betula platyphylla and characterized its functions in lignin biosynthesis, wood formation and tree growth through transgenic approaches. We generated overexpression and suppression transgenic lines and analyzed them in comparison with the wild-type in terms of lignin content, anatomical characteristics, height and biomass. We found that BpCCR1 overexpression could increase lignin content up to 14.6%, and its underexpression decreased lignin content by 6.3%. Surprisingly, modification of BpCCR1 expression led to conspicuous changes in wood characteristics, including xylem vessel number and arrangement, and secondary wall thickness. The growth of transgenic trees in terms of height was also significantly influenced by the modification of BpCCR1 genes. We discuss the functions of BpCCR1 in the context of a phylogenetic tree built with CCR genes from multiple species.


Subject(s)
Aldehyde Oxidoreductases/metabolism , Betula/enzymology , Gene Expression Regulation, Plant , Lignin/metabolism , Aldehyde Oxidoreductases/genetics , Base Sequence , Betula/genetics , Betula/growth & development , Biomass , Cell Wall/metabolism , Gene Expression , Meristem/enzymology , Meristem/genetics , Meristem/growth & development , Molecular Sequence Data , Organ Specificity , Phylogeny , Plant Leaves/enzymology , Plant Leaves/genetics , Plant Leaves/growth & development , Plant Proteins/genetics , Plant Proteins/metabolism , Plant Roots/enzymology , Plant Roots/genetics , Plant Roots/growth & development , Plant Stems/enzymology , Plant Stems/genetics , Plant Stems/growth & development , Plants, Genetically Modified , Sequence Analysis, DNA , Wood/enzymology , Wood/genetics , Wood/growth & development , Xylem/enzymology , Xylem/genetics , Xylem/growth & development
12.
BMC Genet ; 15 Suppl 1: S4, 2014.
Article in English | MEDLINE | ID: mdl-25079429

ABSTRACT

BACKGROUND: S-adenosyl-l-homocysteine hydrolase (SAHH) is the only eukaryotic enzyme capable of S-adenosyl-l-homocysteine (SAH) catabolism for the maintenance of cellular transmethylation potential. Recently, biochemical and genetic studies in herbaceous species have obtained important discoveries in the function of SAHH, and an extensive characterization of SAHH family in even one tree species is essential, but currently lacking. RESULTS: Here, we first identified the SAHH family from Populus tomentosa using molecular cloning method. Phylogenetic analyses of 28 SAHH proteins from dicotyledons, monocotyledons, and lower plants revealed that the sequences formed two monophyletic groups: the PtrSAHHA with PtoSAHHA and PtrSAHHB with PtoSAHHB. Examination of tissue-specific expression profiles of the PtoSAHH family revealed similar expression patterns; high levels of expression in xylem were found. Nucleotide diversity and linkage disequilibrium (LD) in the PtoSAHH family, sampled from P. tomentosa natural distribution, revealed that PtoSAHH harbors high single-nucleotide polymorphism (SNP) diversity (π = 0.01059 ± 0.00122 and 0.00930 ± 0.00079,respectively) and low LD (r2 > 0.1, within 800 bp and 2,200 bp, respectively). Using an LD-linkage analysis approach, two noncoding SNPs (PtoSAHHB_1065 and PtoSAHHA_2203) and the corresponding haplotypes were found to significantly associate with α-cellulose content, and a nonsynonymous SNP (PtoSAHHB_410) within the SAHH signature motifs showed significant association with fiber length, with an average of 3.14% of the phenotypic variance explained. CONCLUSIONS: The present study demonstrates that PtoSAHHs were split off prior to the divergence of interspecies in Populus, and SAHHs may play a key role promoting transmethylation reactions in the secondary cell walls biosynthesis in trees. Hence, our findings provide insights into SAHH function and evolution in woody species and also offer a theoretical basis for marker-aided selection breeding to improve the wood quality of Populus.


Subject(s)
Adenosylhomocysteinase/genetics , Multigene Family , Populus/genetics , Wood/genetics , Alleles , Amino Acid Sequence , Cell Wall/genetics , Cloning, Molecular , DNA, Plant/genetics , Haplotypes , Linkage Disequilibrium , Molecular Sequence Data , Phylogeny , Polymorphism, Single Nucleotide , Populus/enzymology , Wood/enzymology
13.
Planta ; 240(6): 1269-86, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25143249

ABSTRACT

In plants, the composition and organization of the cell wall determine cell shape, enable cell expansion, and affect the properties of woody tissues. Cellulose synthase (CesA) genes encode the enzymes involved in the synthesis of cellulose which is the major component of plant primary and secondary cell walls. Here, we isolated a full-length PtoCesA3 cDNA from the stem cambium tissue of Populus tomentosa. Tissue-specific expression profiling showed that PtoCesA3 is highly expressed during primary cell wall formation. Estimation of single nucleotide polymorphism (SNP) diversity and linkage disequilibrium (LD) revealed that PtoCesA3 harbors high SNP diversity (π(T) = 0.00995 and θ(w) = 0.0102) and low LD (r(2) ≥ 0.1, within 1,280 bp). Association analysis in a P. tomentosa association population (460 individuals) showed that seven SNPs (false discovery rate Q < 0.10) and five haplotypes (Q < 0.10) were significantly associated with growth and wood properties, explaining 4.09-7.02% of the phenotypic variance. All significant marker-trait associations were validated in at least one of the three smaller subsets (climatic regions) while five associations were repeated in the linkage population. Variation in RNA transcript abundance among genotypic classes of significant loci was also confirmed in the association or linkage populations. Identification of PtoCesA3 and examining its allelic polymorphisms using association studies open an avenue to understand the mechanism of cellulose synthesis in the primary cell wall and its effects on the properties of woody tissues.


Subject(s)
Genes, Plant , Glucosyltransferases/genetics , Polymorphism, Single Nucleotide/genetics , Populus/enzymology , Populus/genetics , Wood/growth & development , Wood/genetics , Gene Expression Profiling , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Genetic Association Studies , Genetic Loci , Genetic Markers , Glucosyltransferases/chemistry , Haplotypes/genetics , Linkage Disequilibrium/genetics , Molecular Sequence Data , Nucleotides/genetics , Organ Specificity/genetics , Phenotype , Phylogeny , Populus/growth & development , Quantitative Trait, Heritable , RNA, Messenger/genetics , RNA, Messenger/metabolism , Wood/enzymology
14.
New Phytol ; 203(4): 1220-1230, 2014 Sep.
Article in English | MEDLINE | ID: mdl-24920335

ABSTRACT

The biosynthesis of wood in aspen (Populus) depends on the metabolism of sucrose, which is the main transported form of carbon from source tissues. The largest fraction of the wood biomass is cellulose, which is synthesized from UDP-glucose. Sucrose synthase (SUS) has been proposed previously to interact directly with cellulose synthase complexes and specifically supply UDP-glucose for cellulose biosynthesis. To investigate the role of SUS in wood biosynthesis, we characterized transgenic lines of hybrid aspen with strongly reduced SUS activity in developing wood. No dramatic growth phenotypes in glasshouse-grown trees were observed, but chemical fingerprinting with pyrolysis-GC/MS, together with micromechanical analysis, showed notable changes in chemistry and ultrastructure of the wood in the transgenic lines. Wet chemical analysis showed that the dry weight percentage composition of wood polymers was not changed significantly. However, a decrease in wood density was observed and, consequently, the content of lignin, hemicellulose and cellulose was decreased per wood volume. The decrease in density was explained by a looser structure of fibre cell walls as shown by increased wall shrinkage on drying. The results show that SUS is not essential for cellulose biosynthesis, but plays a role in defining the total carbon incorporation to wood cell walls.


Subject(s)
Cell Wall/metabolism , Cellulose/biosynthesis , Glucosyltransferases/deficiency , Populus/enzymology , Populus/growth & development , Wood/enzymology , Wood/growth & development , Arabidopsis/enzymology , Biomechanical Phenomena , Crosses, Genetic , Gene Expression Regulation, Plant , Glucosyltransferases/genetics , Glucosyltransferases/metabolism , Populus/anatomy & histology , Populus/genetics , RNA Interference , Solubility , Transcriptome/genetics , Wood/anatomy & histology , Wood/genetics
15.
PLoS One ; 9(2): e87370, 2014.
Article in English | MEDLINE | ID: mdl-24523868

ABSTRACT

Wood is one of the promising bioenergy feedstocks for lignocellulosic biofuel production. Understanding how wood components are synthesized will help us design strategies for better utilization of wood for biofuel production. One of the major wood components is xylan, in which about 10% of xylosyl residues are substituted with glucuronic acid (GlcA) side chains. All the GlcA side chains of xylan in wood of Populus trichocarpa are methylated, which is different from Arabidopsis xylan in which about 60% of GlcA side chains are methylated. Genes responsible for methylation of GlcA side chains in Populus xylan have not been identified. Here, we report genetic and biochemical analyses of four DUF579 domain-containing proteins, PtrGXM1, PtrGXM2, PtrGXM3 and PtrGXM4, from Populus trichocarpa and their roles in GlcA methylation in xylan. The PtrGXM genes were found to be highly expressed in wood-forming cells and their encoded proteins were shown to be localized in the Golgi. When overexpressed in the Arabidopsis gxm1/2/3 triple mutant, PtrGXMs were able to partially complement the mutant phenotypes including defects in glucuronoxylan methyltransferase activity and GlcA methylation in xylan, indicating that PtrGXMs most likely function as glucuronoxylan methyltransferases. Direct evidence was provided by enzymatic analysis of recombinant PtrGXM proteins showing that they possessed a methyltransferase activity capable of transferring the methyl group onto GlcA-substituted xylooligomers. Kinetic analysis showed that PtrGXMs exhibited differential affinities toward the GlcA-substituted xylooligomer acceptor with PtrGXM3 and PtrGXM4 having 10 times higher K m values than PtrGXM1 and PtrGXM2. Together, these findings indicate that PtrGXMs are methyltransferases mediating GlcA methylation in Populus xylan during wood formation.


Subject(s)
Methyltransferases/metabolism , Populus/enzymology , Populus/genetics , Xylans/chemistry , Cell Wall/enzymology , Cell Wall/metabolism , Gene Expression Profiling , Gene Expression Regulation, Plant , Genes, Plant , Glycosyltransferases/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Methylation , Molecular Sequence Data , Mutation , Phenotype , Phylogeny , Protein Structure, Tertiary , Recombinant Proteins/metabolism , Wood/enzymology , Wood/metabolism
16.
Plant Biotechnol J ; 12(2): 174-82, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24112147

ABSTRACT

Nootkatone is one of the major terpenes in the heartwood of the Nootka cypress Callitropsis nootkatensis. It is an oxidized sesquiterpene, which has been postulated to be derived from valencene. Both valencene and nootkatone are used for flavouring citrus beverages and are considered among the most valuable terpenes used at commercial scale. Functional evaluation of putative terpene synthase genes sourced by large-scale EST sequencing from Nootka cypress wood revealed a valencene synthase gene (CnVS). CnVS expression in different tissues from the tree correlates well with nootkatone content, suggesting that CnVS represents the first dedicated gene in the nootkatone biosynthetic pathway in C. nootkatensis The gene belongs to the gymnosperm-specific TPS-d subfamily of terpenes synthases and its protein sequence has low similarity to known citrus valencene synthases. In vitro, CnVS displays high robustness under different pH and temperature regimes, potentially beneficial properties for application in different host and physiological conditions. Biotechnological production of sesquiterpenes has been shown to be feasible, but productivity of microbial strains expressing valencene synthase from Citrus is low, indicating that optimization of valencene synthase activity is needed. Indeed, expression of CnVS in Saccharomyces cerevisiae indicated potential for higher yields. In an optimized Rhodobacter sphaeroides strain, expression of CnVS increased valencene yields 14-fold to 352 mg/L, bringing production to levels with industrial potential.


Subject(s)
Alkyl and Aryl Transferases/metabolism , Biotechnology/methods , Cupressaceae/enzymology , Sesquiterpenes/metabolism , Terpenes/metabolism , Alkyl and Aryl Transferases/genetics , Amino Acid Sequence , Cupressaceae/genetics , Gene Expression , Kinetics , Molecular Sequence Data , Phylogeny , Polycyclic Sesquiterpenes , Recombinant Proteins , Rhodobacter/genetics , Rhodobacter/metabolism , Sequence Alignment , Sequence Analysis, DNA , Sesquiterpenes/analysis , Sesquiterpenes/chemistry , Terpenes/analysis , Wood/enzymology , Wood/genetics
17.
Zhongguo Zhong Yao Za Zhi ; 38(5): 678-82, 2013 Mar.
Article in Chinese | MEDLINE | ID: mdl-23724674

ABSTRACT

OBJECTIVE: To study the application of degrading multi-enzymes from Ganoderma lucidum in extracting effective constituents from fibrous roots of Salvia miltiorrhiza. METHOD: Effective constituents were extracted from fibrous roots by degrading multi-enzymes of wood fiber. The enzymatic parameters were optimized by the orthogonal design. RESULT: The extraction efficiencies of total tanshinones and total salvianolic acids in the extracts of fibrous roots of S. miltiorrhiza was obtained using optimum enzymolysis process reached 11.923%, 12.465%, respectively, which were 62.794%, 56.086% more than that by conventional non-enzymatic hydrolysis. CONCLUSION: Degrading multi-enzymes of wood fiber can be used to fully extract effective constituents from fibrous roots of S. miltiorrhiza, which provides a new approach for recycling wastes of traditional Chinese medicines.


Subject(s)
Drugs, Chinese Herbal/isolation & purification , Drugs, Chinese Herbal/metabolism , Plant Roots/chemistry , Reishi/enzymology , Salvia miltiorrhiza/chemistry , Abietanes/isolation & purification , Abietanes/metabolism , Alkenes/isolation & purification , Alkenes/metabolism , Hydrogen-Ion Concentration , Polyphenols/isolation & purification , Polyphenols/metabolism , Temperature , Wood/enzymology
18.
Planta ; 237(3): 799-812, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23132521

ABSTRACT

The increasing focus on plantation forestry as a renewable source of cellulosic biomass has emphasized the need for tools to study the unique biology of woody genera such as Eucalyptus, Populus and Pinus. The domestication of these woody crops is hampered by long generation times, and breeders are now looking to molecular approaches such as marker-assisted breeding and genetic modification to accelerate tree improvement. Much of what is known about genes involved in the growth and development of plants has come from studies of herbaceous models such as Arabidopsis and rice. However, transferring this information to woody plants often proves difficult, especially for genes expressed in woody stems. Here we report the use of induced somatic sector analysis (ISSA) for characterization of promoter expression patterns directly in the stems of Populus and Eucalyptus trees. As a case study, we used previously characterized primary and secondary cell wall-related cellulose synthase (CesA) promoters cloned from Eucalyptus grandis. We show that ISSA can be used to elucidate the phloem and xylem expression patterns of the CesA genes in Eucalyptus and Populus stems and also show that the staining patterns differ in Eucalyptus and Populus stems. These findings show that ISSA is an efficient approach to investigate promoter function in the developmental context of woody plant tissues and raise questions about the suitability of heterologous promoters for genetic manipulation in plant species.


Subject(s)
Genetic Techniques , Glucosyltransferases/genetics , Plant Stems/enzymology , Plant Stems/genetics , Promoter Regions, Genetic , Wood/enzymology , Wood/genetics , Arabidopsis/enzymology , Arabidopsis/genetics , Eucalyptus/enzymology , Eucalyptus/genetics , Eucalyptus/growth & development , Gene Expression Regulation, Plant , Genes, Plant/genetics , Glucuronidase/metabolism , Plants, Genetically Modified , Populus/enzymology , Populus/genetics , Populus/growth & development , Species Specificity , Staining and Labeling , Time Factors , Transformation, Genetic
19.
Bioresour Technol ; 135: 30-8, 2013 May.
Article in English | MEDLINE | ID: mdl-23186672

ABSTRACT

The purpose of liquid hot water and steam pretreatment of wood is to fractionate hemicelluloses, partially solubilize lignin, and enhance enzyme hydrolysis of cellulose. The pretreatment also solubilizes sugar oligomers, lignin-derived phenolic compounds, acetic acid, and furan derivatives that inhibit cellulase enzymes and/or impede fermentation of hydrolysates by yeasts. This work extends knowledge of the relative contribution of identified inhibitors, and the effect of temperature on their release when pretreated materials are washed and filtered with hot water. Dramatic yield improvements occur when polymeric or activated carbon adsorbs and removes inhibitors. By desorbing, recovering, and characterizing adsorbed molecules we found phenolic compounds were strong inhibitors of enzyme hydrolysis and fermentation of concentrated filtrates by Saccharomyces cerevisiae wine yeast NRRL Y-1536 or xylose fermenting yeast 424A (LNH-ST). These data show that separation of inhibitors from pretreatment liquid will be important in achieving maximal enzyme activity and efficient fermentations.


Subject(s)
Cellulase/antagonists & inhibitors , Chemical Fractionation/methods , Enzyme Inhibitors/isolation & purification , Fermentation/drug effects , Steam , Wood/chemistry , Wood/enzymology , Acrylic Resins/pharmacology , Adsorption/drug effects , Cellulase/metabolism , Cellulose/metabolism , Glucose/metabolism , Hydrolysis/drug effects , Phenols/isolation & purification , Polystyrenes/pharmacology , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/metabolism , Solvents/chemistry , Time Factors
20.
Am J Bot ; 99(2): e46-8, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22268219

ABSTRACT

PREMISE OF THE STUDY: Microsatellite markers from cellulose synthase genes were developed for the Chinese white poplar, Populus tomentosa, to investigate the genetic diversity of wild germplasm resources and to further identify favorable alleles significantly associated with wood cellulose content. METHODS AND RESULTS: Fifteen microsatellite markers were developed in P. tomentosa by deep sequencing of cellulose synthase genes. Polymorphisms were evaluated in 460 individuals from three climatic regions of P. tomentosa, and all 15 markers revealed polymorphic variation. The number of alleles per locus ranged from two to nine with an average of 4.3; the observed and expected heterozygosity per locus varied from 0.029 to 0.962 and from 0.051 to 0.713, respectively. CONCLUSIONS: These polymorphic markers will potentially be useful for genetic mapping and in molecular breeding for improvement of wood fiber traits in Populus.


Subject(s)
Genes, Plant , Glucosyltransferases/genetics , Microsatellite Repeats , Populus/genetics , Alleles , Climate , DNA, Plant/genetics , Gene Frequency , Genetic Loci , Heterozygote , High-Throughput Nucleotide Sequencing , Polymorphism, Genetic , Populus/enzymology , Wood/enzymology , Wood/genetics
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