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1.
Biomolecules ; 10(9)2020 09 07.
Article in English | MEDLINE | ID: mdl-32906756

ABSTRACT

ß-1,3 xylanase is an important enzyme in the biorefinery process for some algae. The discovery and characterization of new ß-1,3 xylanase is a hot research topic. In this paper, a novel ß-1,3 xylanase (Xyl88) is revealed from the annotated genome of Flammeovirga pacifica strain WPAGA1. Bioinformatic analysis shows that Xyl88 belongs to the glycoside hydrolase 26 (GH26) with a suspected CBM (carbohydrate-binding module) sequence. The activity of rXyl88 is 75% of the highest enzyme activity (1.5 mol/L NaCl) in 3 mol/L NaCl buffer, which suggests good salt tolerance of rXy188. The optimum reaction temperature in the buffer without NaCl and with 1.5 mol/L NaCl is 45 °C and 55 °C, respectively. Notably, the catalytic efficiency of rXyl88 (kcat/Km) is approximately 20 higher than that of the thermophilic ß-1,3 xylanase that has the highest catalytic efficiency. Xyl88 in this study becomes the most efficient enzyme ever found, and it is also the first reported moderately thermophilic and salt-tolerant ß-1,3 xylanase. Results of molecular dynamics simulation further prove the excellent thermal stability of Xyl88. Moreover, according to the predicted 3D structure of the Xyl88, the surface of the enzyme is distributed with more negative charges, which is related to its salt tolerance, and significantly more hydrogen bonds and Van der Waals force between the intramolecular residues, which is related to its thermal stability.


Subject(s)
Bacteroidetes/enzymology , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/metabolism , Bacteroidetes/genetics , Cations/metabolism , Enzyme Stability , Hydrogen-Ion Concentration , Kinetics , Models, Molecular , Receptors, Cell Surface/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Recombinant Proteins/metabolism , Salt Tolerance , Sequence Alignment , Sodium Chloride , Temperature , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/isolation & purification , Xylans/metabolism
2.
Enzyme Microb Technol ; 112: 72-78, 2018 May.
Article in English | MEDLINE | ID: mdl-29499784

ABSTRACT

In previous reports, we characterized four endo-xylanases produced by Streptomyces sp. strain SWU10 that degrade xylans to several xylooligosaccharides. To obtain a set of enzymes to achieve complete xylan degradation, a ß-d-xylosidase gene was cloned and expressed in Escherichia coli, and the recombinant protein, named rSWU43A, was characterized. SWU43A is composed of 522 amino acids and does not contain a signal peptide, indicating that the enzyme is an intracellular protein. SWU43A was revealed to contain a Glyco_hydro_43 domain and possess the three conserved amino acid residues of the glycoside hydrolase family 43 proteins. The molecular mass of rSWU43A purified by Ni-affinity column chromatography was estimated to be 60kDa. The optimum reaction conditions of rSWU43A were pH 6.5 and 40°C. The enzyme was stable up to 40°C over a wide pH range (3.1-8.9). rSWU43A activity was enhanced by Fe2+ and Mn2+ and inhibited by various metals (Ag+, Cd2+, Co2+, Cu2+, Hg2+, Ni2+, and Zn2+), d-xylose, and l-arabinose. rSWU43A showed activity on p-nitrophenyl-ß-d-xylopyranoside and p-nitrophenyl-α-l-arabinofuranoside substrates, with specific activities of 0.09 and 0.06U/mg, respectively, but not on any xylosidic or arabinosidic polymers. rSWU43A efficiently degraded ß-1,3-xylooligosaccharides to produce xylose but showed little activity towards ß-1,4-xylobiose, with specific activities of 1.33 and 0.003U/mg, respectively. These results demonstrate that SWU43A is a ß-1,3-d-xylosidase (EC 3.2.1.72), which to date has only been described in the marine bacterium Vibrio sp. Therefore, rSWU43A of Streptomyces sp. is the first ß-1,3-xylosidase found in gram-positive bacteria. SWU43A could be useful as a specific tool for the structural elucidation and production of xylose from ß-1,3-xylan in seaweed cell walls.


Subject(s)
Bacterial Proteins/metabolism , Streptomyces/enzymology , Xylan Endo-1,3-beta-Xylosidase/metabolism , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Biotechnology , Cloning, Molecular , Enzyme Stability , Genes, Bacterial , Glucuronates/metabolism , Kinetics , Molecular Weight , Oligosaccharides/metabolism , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Streptomyces/genetics , Substrate Specificity , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylans/metabolism
3.
Biotechnol Lett ; 37(1): 89-94, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25214227

ABSTRACT

Cold-adapted ß-1,3-xylanase (P.t.Xyn26A) from the psychrotrophic bacterium, Psychroflexus torquis, was expressed as a fusion protein with tandem repeats of the N-terminal domain of Protein S from Myxocuccus xanthus (ProS2) in Escherichia coli. After cell lysis in phosphate buffer, most of the ProS2-P.t.Xyn26A was located in the insoluble fraction and aggregated during purification. Arginine hydrochloride (ArgHCl) efficiently solubilized the ProS2-P.t.Xyn26A. The solubilized ProS2-P.t.Xyn26A was purified using immobilized metal affinity chromatography (IMAC) with 500 mM ArgHCl. After cleavage of ProS2-P.t.Xyn26A by human rhinovirus 3C protease, we confirmed that recombinant P.t.Xyn26A maintained its native fold. This is the first report of the expression of a cold-adapted enzyme fused with a ProS2 tag under IMAC purification using a high concentration of ArgHCl. These insights into the expression and purification should be useful during the handling of cold-adapted enzymes.


Subject(s)
Arginine/chemistry , Bacterial Proteins/genetics , Chromatography, Affinity/methods , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Xylan Endo-1,3-beta-Xylosidase/isolation & purification , Xylan Endo-1,3-beta-Xylosidase/metabolism , Escherichia coli/genetics , Flavobacteriaceae/enzymology , Flavobacteriaceae/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/genetics
4.
Prikl Biokhim Mikrobiol ; 47(3): 308-17, 2011.
Article in Russian | MEDLINE | ID: mdl-21790031

ABSTRACT

A heterologous gene expression system was created in a domestic Aspergillus awamori Co-6804 strain, which is a producer of the glucoamylase gene. Vector pGa was prepared using promoter and terminator areas of the glucoamylase gene, and A. niger phytase, Trichoderma reesei endoglucanase, and Penicillium canescens xylanase genes were then cloned into pGa vector. Separation of enzyme samples using FPLC showed the amount of the recombinant proteins to be within the 0.6-14% range of total protein.


Subject(s)
Aspergillus/genetics , Gene Expression Regulation, Fungal , Genetic Vectors/chemistry , Genetic Vectors/isolation & purification , Recombinant Proteins/biosynthesis , 6-Phytase/genetics , 6-Phytase/metabolism , Aspergillus/enzymology , Base Sequence , Biotechnology , Cellulase/genetics , Cellulase/metabolism , Cloning, Molecular , Genetic Engineering , Glucan 1,4-alpha-Glucosidase/genetics , Glucan 1,4-alpha-Glucosidase/metabolism , Molecular Sequence Data , Penicillium/chemistry , Penicillium/enzymology , Promoter Regions, Genetic , Recombinant Proteins/genetics , Terminator Regions, Genetic , Trichoderma/chemistry , Trichoderma/enzymology , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism
5.
Mol Biol Rep ; 38(5): 3227-33, 2011 Jun.
Article in English | MEDLINE | ID: mdl-20213504

ABSTRACT

We studied heterologous expression of xylanase 11A gene of Chaetomium thermophilum in Pichia pastoris and characterized the thermostable nature of the purified gene product. For this purpose, the xylanase 11A gene of C. thermophilum was cloned in P. pastoris GS115 under the control of AOX1 promoter. The maximum extracellular activity of recombinant xylanase (xyn698: gene with intron) was 15.6 U ml(-1) while that of recombinant without intron (xyn669) was 1.26 U ml(-1) after 96 h growth. The gene product was purified apparently to homogeneity level. The optimum temperature of pure recombinant xylanase activity was 70°C and the enzyme retained its 40.57% activity after incubation at 80°C for 10 min. It exhibited quite lower demand of activation energy, enthalpy, Gibbs free energy, entropy, and xylan binding energy during substrate hydrolysis than that required by that of the donor, thus indicating its thermostable nature. pH-dependent catalysis showed that it was quite stable in a pH range of 5.5-8.5. This revealed that gene was successfully processed in P. pastoris and remained heat stable and may qualify for its potential use in paper and pulp and animal feed applications.


Subject(s)
Chaetomium/enzymology , Fungal Proteins/genetics , Fungal Proteins/metabolism , Pichia/metabolism , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism , Amino Acid Sequence , Cloning, Molecular , Enzyme Stability , Molecular Sequence Data , Pichia/genetics , Promoter Regions, Genetic , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Thermodynamics
6.
Appl Microbiol Biotechnol ; 84(6): 1107-15, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19506861

ABSTRACT

Although a lot of xylanases are studied, only a few xylanases from marine microorganisms have been reported. A new xylanase gene, xynA, was cloned from marine bacterium Glaciecola mesophila KMM 241. Gene xynA contains 1,272 bp and encodes a 423-amino acid xylanase precursor. The recombinant xylanase, XynA, expressed in Escherichia coli BL21 is a monomer with a molecular mass of 43 kDa. Among the characterized xylanases, XynA shares the highest identity (46%) to the xylanase from Flavobacterium sp. strain MSY2. The optimum pH and temperature for XynA is 7.0 and 30 degrees C. XynA retains 23% activity and 27% catalytic efficiency at 4 degrees C. XynA has low thermostability, remaining 20% activity after 60-min incubation at 30 degrees C. Its apparent melting temperature (T (m)) is 44.5 degrees C. These results indicate that XynA is a cold-active xylanase. XynA shows a high level of salt-tolerance, with the highest activity at 0.5 M NaCl and retaining 90% activity in 2.5 M NaCl. It may be the first salt-tolerant xylanase reported. XynA is a strict endo-beta-1,4-xylanase with a demand of at least four sugar moieties for effective cleavage. It efficiently hydrolyzes xylo-oligosaccharides and xylan into xylobiose and xylotriose without producing xylose, suggesting its potential in xylo-oligosaccharides production.


Subject(s)
Alteromonadaceae/enzymology , Xylan Endo-1,3-beta-Xylosidase , Alteromonadaceae/genetics , Amino Acid Sequence , Cloning, Molecular , Cold Temperature , DNA, Bacterial/genetics , Escherichia coli/metabolism , Genes, Bacterial , Molecular Sequence Data , Recombinant Proteins/biosynthesis , Salt Tolerance , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Substrate Specificity , Water Microbiology , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism
7.
BMC Biotechnol ; 9: 56, 2009 Jun 16.
Article in English | MEDLINE | ID: mdl-19527524

ABSTRACT

BACKGROUND: In recent years, xylanases have attracted considerable research interest because of their potential in various industrial applications. The yeast Pichia pastoris can neither utilize nor degrade xylan, but it possesses many attributes that render it an attractive host for the expression and production of industrial enzymes. RESULTS: The Xyn2 gene, which encodes the main Trichoderma reesei Rut C-30 endo-beta-1, 4-xylanase was cloned into the pPICZalphaA vector and expressed in Pichia pastoris. The selected P. pastoris strains produced as 4,350 nkat/ml beta-xylanase under the control of the methanol inducible alcohol oxidase 1 (AOX1) promoter. The secreted recombinant Xyn2 was estimated by SDS-PAGE to be 21 kDa. The activity of the recombinant Xyn2 was highest at 60 degrees C and it was active over a broad range of pH (3.0-8.0) with maximal activity at pH 6.0. The enzyme was quite stable at 50 degrees C and retained more than 94% of its activity after 30 mins incubation at this temperature. Using Birchwood xylan, the determined apparent Km and kcat values were 2.1 mg/ml and 219.2 S-1, respectively. The enzyme was highly specific towards xylan and analysis of xylan hydrolysis products confirmed as expected that the enzyme functions as endo-xylanase with xylotriose as the main hydrolysis products. The produced xylanase was practically free of cellulolytic activity. CONCLUSION: The P. pastoris expression system allows a high level expression of xylanases. Xylanase was the main protein species in the culture supernatant, and the functional tests indicated that even the non-purified enzyme shows highly specific xylanase activity that is free of cellulolytic side acitivities. Therefore, P pastoris is a very useful expression system when the goal is highly specific and large scale production of glycosyl hydrolases.


Subject(s)
Fungal Proteins/metabolism , Pichia/metabolism , Recombinant Proteins/biosynthesis , Trichoderma/enzymology , Xylan Endo-1,3-beta-Xylosidase/metabolism , Cloning, Molecular , Fungal Proteins/genetics , Gene Expression , Hydrogen-Ion Concentration , Kinetics , Pichia/genetics , Recombinant Proteins/genetics , Recombinant Proteins/isolation & purification , Substrate Specificity , Temperature , Trichoderma/genetics , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/isolation & purification
8.
Biosci Biotechnol Biochem ; 72(9): 2285-93, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18776691

ABSTRACT

A culture filtrate of Bacillus sp. KT12 was used to prepare polyphenyl beta-oligoxylosides from xylan and polyphenols in a one-step reaction. One oligoxyloside transfer enzyme was purified from multiple xylanolytic enzymes in the culture filtrate. N-terminal amino acid sequence determination classified the enzyme as a glycosyl hydrolase family 11 (endo-xylanase). The xylanolytic enzyme activities could be markedly altered; its hydrolytic activity was almost entirely inhibited at acidic pH, whereas near constant transxylosylation activity was observed at pH 4-11. Further, metal ions activated transxylosylation and almost completely inhibited hydrolysis. The enzyme specifically induced a beta-xylosyl transfer reaction to acceptor molecules, such as divalent and trivalent phenolic hydroxyl groups, and displayed no activity toward alcoholic compounds. The Bacillus sp. KT12 xylanolytic enzyme was a suitable enzyme for the synthesis of polyphenyl beta-oligoxylosides.


Subject(s)
Bacillus/enzymology , Flavonoids , Phenols , Xylan Endo-1,3-beta-Xylosidase/metabolism , Amino Acid Sequence , Hydrogen-Ion Concentration , Hydrolysis , Molecular Sequence Data , Polyphenols , Temperature , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/isolation & purification
9.
Appl Environ Microbiol ; 74(1): 305-8, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17993567

ABSTRACT

The beta-1,3-xylosidase gene (xloA) of Vibrio sp. strain XY-214 was cloned and expressed in Escherichia coli. The xloA gene consisted of a 1,608-bp nucleotide sequence encoding a protein of 535 amino acids with a predicted molecular weight of 60,835. The recombinant beta-1,3-xylosidase hydrolyzed beta-1,3-xylooligosaccharides to D-xylose as a final product.


Subject(s)
Vibrio/enzymology , Vibrio/genetics , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism , Cloning, Molecular , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Escherichia coli/genetics , Molecular Sequence Data , Molecular Weight , Oligosaccharides/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Analysis, DNA , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylose/metabolism
10.
Biochimie ; 89(12): 1489-97, 2007 Dec.
Article in English | MEDLINE | ID: mdl-17689169

ABSTRACT

A bifunctional high molecular weight (Mr, 64,500 Da) beta-1-3, 1-4 glucan 4-glucanohydrolase was purified to homogeneity from Thermomonospora sp., exhibiting activity towards lichenan and xylan. A kinetic method was used to analyze the active site that hydrolyzes lichenan and xylan. The experimental data was in agreement with the theoretical values calculated for a single active site. Probing the conformation and microenvironment at active site of the enzyme by fluorescent chemo-affinity label, OPTA resulted in the formation of an isoindole derivative with complete inactivation of the enzyme to hydrolyse both lichenan and xylan confirmed the results of kinetic method. OPTA forms an isoindole derivative by cross-linking the proximal thiol and amino groups. The modification of cysteine and lysine residues by DTNB and TNBS respectively abolished the ability of the enzyme to form an isoindole derivative with OPTA, indicating the participation of cysteine and lysine in the formation of isoindole complex.


Subject(s)
Actinomycetales/enzymology , Glucan 1,4-beta-Glucosidase/chemistry , Glucans/chemistry , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylans/chemistry , Affinity Labels/pharmacology , Binding Sites , Circular Dichroism , Cysteine/genetics , Dithionitrobenzoic Acid/pharmacology , Glucan 1,4-beta-Glucosidase/genetics , Glucan 1,4-beta-Glucosidase/isolation & purification , Glucan 1,4-beta-Glucosidase/metabolism , Hydrolysis , Kinetics , Lysine/chemistry , Lysine/genetics , Protein Binding , Substrate Specificity , Trinitrobenzenesulfonic Acid/chemistry , Trinitrobenzenesulfonic Acid/pharmacology , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/isolation & purification , Xylan Endo-1,3-beta-Xylosidase/metabolism , o-Phthalaldehyde/pharmacology
11.
J Bacteriol ; 188(24): 8617-26, 2006 Dec.
Article in English | MEDLINE | ID: mdl-17028274

ABSTRACT

Secretion of xylanase activities by Bacillus subtilis 168 supports the development of this well-defined genetic system for conversion of methylglucuronoxylan (MeGAXn [where n represents the number of xylose residues]) in the hemicellulose component of lignocellulosics to biobased products. In addition to the characterized glycosyl hydrolase family 11 (GH 11) endoxylanase designated XynA, B. subtilis 168 secretes a second endoxylanase as the translated product of the ynfF gene. This sequence shows remarkable homology to the GH 5 endoxylanase secreted by strains of Erwinia chrysanthemi. To determine its properties and potential role in the depolymerization of MeGAXn, the ynfF gene was cloned and overexpressed to provide an endoxylanase, designated XynC, which was characterized with respect to substrate preference, kinetic properties, and product formation. With different sources of MeGAXn as the substrate, the specific activity increased with increasing methylglucuronosyl substitutions on the beta-1,4-xylan chain. With MeGAXn from sweetgum as a preferred substrate, XynC exhibited a Vmax of 59.9 units/mg XynC, a Km of 1.63 mg MeGAXn/ml, and a k(cat) of 2,635/minute at pH 6.0 and 37 degrees C. Matrix-assisted laser desorption ionization-time of flight mass spectrometry and 1H nuclear magnetic resonance data revealed that each hydrolysis product has a single glucuronosyl substitution penultimate to the reducing terminal xylose. This detailed analysis of XynC from B. subtilis 168 defines the unique depolymerization process catalyzed by the GH 5 endoxylanases. Based upon product analysis, B. subtilis 168 secretes both XynA and XynC. Expression of xynA was subject to MeGAXn induction; xynC expression was constitutive with growth on different substrates. Translation and secretion of both GH 11 and GH 5 endoxylanases by the fully sequenced and genetically malleable B. subtilis 168 recommends this bacterium for the introduction of genes required for the complete utilization of products of the enzyme-catalyzed depolymerization of MeGAXn. B. subtilis may serve as a model platform for development of gram-positive biocatalysts for conversion of lignocellulosic materials to renewable fuels and chemicals.


Subject(s)
Bacillus subtilis/enzymology , Polymers/metabolism , Xylan Endo-1,3-beta-Xylosidase , Xylans/metabolism , Bacillus subtilis/genetics , Bacillus subtilis/growth & development , Gene Expression Regulation, Bacterial , Glycoside Hydrolases/genetics , Glycoside Hydrolases/metabolism , Magnetic Resonance Spectroscopy , Mass Spectrometry , Reverse Transcriptase Polymerase Chain Reaction , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism , Xylans/chemistry
12.
J Biotechnol ; 125(4): 447-61, 2006 Oct 01.
Article in English | MEDLINE | ID: mdl-16644051

ABSTRACT

Commercial polysaccharase preparations are applied to winemaking to improve wine processing and quality. Expression of polysaccharase-encoding genes in Saccharomyces cerevisiae allows for the recombinant strains to degrade polysaccharides that traditional commercial yeast strains cannot. In this study, we constructed recombinant wine yeast strains that were able to degrade the problem-causing grape polysaccharides, glucan and xylan, by separately integrating the Trichoderma reesei XYN2 xylanase gene construct and the Butyrivibrio fibrisolvens END1 glucanase gene cassette into the genome of the commercial wine yeast strain S. cerevisiae VIN13. These genes were also combined in S. cerevisiae VIN13 under the control of different promoters. The strains that were constructed were compared under winemaking conditions with each other and with a recombinant wine yeast strain expressing the endo-beta-1,4-glucanase gene cassette (END1) from B. fibrisolvens and the endo-beta-1,4-xylanase gene cassette (XYN4) from Aspergillus niger, a recombinant strain expressing the pectate lyase gene cassette (PEL5) from Erwinia chrysanthemi and the polygalacturonase-encoding gene cassette (PEH1) from Erwinia carotovora. Wine was made with the recombinant strains using different grape cultivars. Fermentations with the recombinant VIN13 strains resulted in significant increases in free-flow wine when Ruby Cabernet must was fermented. After 6 months of bottle ageing significant differences in colour intensity and colour stability could be detected in Pinot Noir and Ruby Cabernet wines fermented with different recombinant strains. After this period the volatile composition of Muscat d'Alexandria, Ruby Cabernet and Pinot Noir wines fermented with different recombinant strains also showed significant differences. The Pinot Noir wines were also sensorial evaluated and the tasting panel preferred the wines fermented with the recombinant strains.


Subject(s)
Food Handling , Organisms, Genetically Modified/genetics , Polysaccharides/metabolism , Saccharomyces cerevisiae/genetics , Wine/microbiology , Chromatography, Gas , Cloning, Molecular , Dickeya chrysanthemi/genetics , Fermentation/genetics , Gene Expression , Genes, Fungal/physiology , Industrial Microbiology/methods , Mutagenesis, Insertional/methods , Pectobacterium carotovorum/genetics , Polygalacturonase/genetics , Recombinant Proteins/genetics , Saccharomyces cerevisiae/metabolism , Transformation, Genetic , Wine/analysis , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylosidases/genetics , Yeasts/genetics , Yeasts/metabolism
13.
Microbiology (Reading) ; 151(Pt 12): 4121-4125, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16339957

ABSTRACT

Experiments were done to define the nature of the xylan-derived induction signal for xylanase activity, and evaluate which xylanase genes among the three known ones (xynA, xynB and xynC) are induced by the presence of xylan in Prevotella bryantii B(1)4. During the later stages of exponential growth on glucose, addition of 0.05 % water-soluble xylan (WS-X) stimulated xylanase formation within 30 min. Xylose, xylobiose, xylotriose, xylotetraose, xylopentaose, arabinose and glucuronic acid all failed to induce the xylanase activity. An acid-ethanol-soluble fraction of WS-X (approximate degree of polymerization 30) enhanced the activity significantly, whereas the acid-ethanol-insoluble fraction had no effect, unless first digested by the cloned P. bryantii XynC xylanase. These results indicate that medium- to large-sized xylo-oligosaccharides are responsible for induction. The transcription of all three known xylanase genes from P. bryantii was upregulated coordinately by addition of WS-X. There have been relatively few investigations into the regulation of xylanase activity in bacteria, and it appears to be unique that medium- to large-sized xylo-oligosaccharides are responsible for induction.


Subject(s)
Gene Expression Regulation, Bacterial/drug effects , Oligosaccharides/pharmacology , Prevotella/enzymology , Xylosidases/biosynthesis , Enzyme Induction/drug effects , Genes, Bacterial , Prevotella/genetics , Xylan Endo-1,3-beta-Xylosidase/biosynthesis , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylans/metabolism , Xylosidases/genetics
14.
Appl Environ Microbiol ; 71(11): 6769-75, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16269708

ABSTRACT

This study was aimed at evaluating the cloning and expression of three rumen microbial fibrolytic enzyme genes in a strain of Lactobacillus reuteri and investigating the probiotic characteristics of these genetically modified lactobacilli. The Neocallimastix patriciarum xylanase gene xynCDBFV, the Fibrobacter succinogenes beta-glucanase (1,3-1,4-beta-D-glucan 4-glucanohydrolase [EC 3.2.1.73]) gene, and the Piromyces rhizinflata cellulase gene eglA were cloned in a strain of L. reuteri isolated from the gastrointestinal tract of broilers. The enzymes were expressed and secreted under the control of the Lactococcus lactis lacA promoter and its secretion signal. The L. reuteri transformed strains not only acquired the capacity to break down soluble carboxymethyl cellulose, beta-glucan, or xylan but also showed high adhesion efficiency to mucin and mucus and resistance to bile salt and acid.


Subject(s)
Carboxymethylcellulose Sodium/metabolism , Limosilactobacillus reuteri/enzymology , Limosilactobacillus reuteri/genetics , Probiotics , Rumen/microbiology , Xylans/metabolism , beta-Glucans/metabolism , Animals , Cellulase/genetics , Cellulase/metabolism , Chickens/microbiology , Endo-1,3(4)-beta-Glucanase/genetics , Endo-1,3(4)-beta-Glucanase/metabolism , Limosilactobacillus reuteri/growth & development , Neocallimastix/enzymology , Neocallimastix/genetics , Piromyces/enzymology , Piromyces/genetics , Transformation, Bacterial , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism
15.
FEMS Yeast Res ; 5(6-7): 677-83, 2005 Apr.
Article in English | MEDLINE | ID: mdl-15780668

ABSTRACT

Heterologous endo-beta-1,4-xylanase was produced by Pichia stipitis under control of the hypoxia-inducible PsADH2-promoter in a high-cell-density culture. After promoter induction by a shift to oxygen limitation, different aeration rates (oxygen transfer rates) were applied while maintaining oxygen-limitation. Initially, enzyme production was higher in oxygen-limited cultures with high rates of oxygen transfer, although the maximum xylanase activity was not significantly influenced. Amino acid supplementation increased the production of the heterologous endo-beta-1,4-xylanase significantly in highly aerated oxygen-limited cultures, until glucose was depleted. A slight second induction of the promoter was observed in all cultures after the glucose had been consumed. The second induction was most obvious in amino acid-supplemented cultures with higher oxygen transfer rates during oxygen limitation. When such oxygen-limited cultures were shifted back to fully aerobic conditions, a significant re-induction of heterologous endo-beta-1,4-xylanase production was observed. Re-induction was accompanied by ethanol consumption. A similar protein production pattern was observed when cultures were first grown on ethanol as sole carbon source and subsequently glucose and oxygen limitation were applied. Thus, we present the first expression system in yeast with a sequential double-inducible promoter.


Subject(s)
Gene Expression Regulation, Fungal , Oxygen/pharmacology , Pichia/enzymology , Promoter Regions, Genetic , Recombinant Proteins/metabolism , Xylan Endo-1,3-beta-Xylosidase/metabolism , Aerobiosis , Amino Acids/metabolism , Anaerobiosis , Culture Media , Ethanol/metabolism , Fermentation , Pichia/genetics , Recombinant Proteins/genetics , Xylan Endo-1,3-beta-Xylosidase/genetics
16.
J Ind Microbiol Biotechnol ; 32(1): 12-8, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15765251

ABSTRACT

A thermostable xylanase gene, xyn10A (CAP0053), was cloned from Clostridium acetobutylicum ATCC 824. The nucleotide sequence of the C. acetobutylicum xyn10A gene encoded a 318-amino-acid, single-domain, family 10 xylanase, Xyn10A, with a molecular mass of 34 kDa. Xyn10A exhibited extremely high (92%) amino acid sequence identity with Xyn10B (CAP0116) of this strain and had 42% and 32% identity with the catalytic domains of Rhodothermus marinus xylanase I and Thermoascus aurantiacus xylanase I, respectively. Xyn10A enzyme was purified from recombinant Escherichia coli and was highly active toward oat-spelt and Birchwood xylan and slightly active toward carboxymethyl cellulose, arabinogalactouronic acid, and various p-nitrophenyl monosaccharides. Xyn10A hydrolyzed xylan and xylooligosaccharides larger than xylobiose to produce xylose. This enzyme was optimally active at 60 degrees C and had an optimum pH of 5.0. This is one of a number of related activities encoded on the large plasmid in this strain.


Subject(s)
Clostridium acetobutylicum/enzymology , Clostridium acetobutylicum/genetics , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism , Amino Acid Sequence , Cloning, Molecular , Hot Temperature , Hydrogen-Ion Concentration , Molecular Sequence Data , Recombinant Proteins/genetics , Xylose/metabolism
17.
Biochem J ; 388(Pt 3): 949-57, 2005 Jun 15.
Article in English | MEDLINE | ID: mdl-15743273

ABSTRACT

We cloned a novel beta-1,3-xylanase gene, consisting of a 1728-bp open reading frame encoding 576 amino acid residues, from a marine bacterium, Vibrio sp. strain AX-4. Sequence analysis revealed that the beta-1,3-xylanase is a modular enzyme composed of a putative catalytic module belonging to glycoside hydrolase family 26 and two putative carbohydrate-binding modules belonging to family 31. The recombinant enzyme hydrolysed beta-1,3-xylan to yield xylo-oligosaccharides with different numbers of xylose units, mainly xylobiose, xylotriose and xylotetraose. However, the enzyme did not hydrolyse beta-1,4-xylan, beta-1,4-mannan, beta-1,4-glucan, beta-1,3-xylobiose or p-nitrophenyl-beta-xyloside. When beta-1,3-xylo-oligosaccharides were used as the substrate, the kcat value of the enzyme for xylopentaose was found to be 40 times higher than that for xylotetraose, and xylotriose was extremely resistant to hydrolysis by the enzyme. A PSI-BLAST search revealed two possible catalytic Glu residues (Glu-138 as an acid/base catalyst and Glu-234 as a nucleophile), both of which are generally conserved in glycoside hydrolase superfamily A. Replacement of these two conserved Glu residues with Asp and Gln resulted in a significant decrease and complete loss of enzyme activity respectively, without a change in their CD spectra, suggesting that these Glu residues are the catalytic residues of beta-1,3-xylanase. The present study also clearly shows that the non-catalytic putative carbohydrate-binding modules play an important role in the hydrolysis of insoluble beta-1,3-xylan, but not that of soluble glycol-beta-1,3-xylan. Furthermore, repeating a putative carbohydrate-binding module strongly enhanced the hydrolysis of the insoluble substrate.


Subject(s)
Carbohydrates/physiology , Vibrio/classification , Vibrio/enzymology , Xylan Endo-1,3-beta-Xylosidase/chemistry , Xylan Endo-1,3-beta-Xylosidase/metabolism , Amino Acid Sequence , Binding Sites , Cloning, Molecular , Escherichia coli , Gene Expression , Hydrolysis , Kinetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Protein Binding , Protein Conformation , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Solubility , Substrate Specificity , Vibrio/genetics , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylans/metabolism
18.
FEMS Microbiol Lett ; 241(2): 233-42, 2004 Dec 15.
Article in English | MEDLINE | ID: mdl-15598538

ABSTRACT

Until recently, the function of the fifth domain of the thermostable modular xylanase Xyn10A from Rhodothermus marinus was unresolved. A putative homologue to this domain was however identified in a mannanase (Man26A) from the same microorganism which raised questions regarding a common function. An extensive search of all accessible data-bases as well as the partially sequenced genomes of R. marinus and Cytophaga hutchinsonii showed that homologues of this domain were encoded by multiple genes in microorganisms in the phylum Bacteroidetes. Moreover, the domain occurred invariably at the C-termini of proteins that were predominantly extra-cellular/cell attached. A primary structure motif of three conserved regions including structurally important glycines and a proline was also identified suggesting a conserved 3D fold. This bioinformatic evidence suggested a possible role of this domain in mediating cell attachment. To confirm this theory, R. marinus was grown, and activity assays showed that the major part of the xylanase activity was connected to whole cells. Moreover, immunocytochemical detection using a Xyn10A-specific antibody proved presence of Xyn10A on the R. marinus cell surface. In the light of this, a revision of experimental data present on both Xyn10A and Man26A was performed, and the results all indicate a cell-anchoring role of the domain, suggesting that this domain represents a novel type of module that mediates cell attachment in proteins originating from members of the phylum Bacteroidetes.


Subject(s)
Bacteroidetes/enzymology , Cell Wall/enzymology , Gene Expression Regulation, Bacterial , Rhodothermus/enzymology , Xylan Endo-1,3-beta-Xylosidase/chemistry , Amino Acid Sequence , Bacteroidetes/classification , Bacteroidetes/genetics , Computational Biology/methods , Immunohistochemistry , Molecular Sequence Data , Phylogeny , Rhodothermus/genetics , Rhodothermus/growth & development , Sequence Alignment , Sequence Homology, Amino Acid , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism
19.
Acta Crystallogr D Biol Crystallogr ; 60(Pt 8): 1470-2, 2004 Aug.
Article in English | MEDLINE | ID: mdl-15272180

ABSTRACT

Beta-1,3-xylanase (1,3-beta-D-xylan xylanohydrolase; EC 3.2.1.32) is an enzyme capable of hydrolyzing beta-1,3-xylan. The newly cloned beta-1,3-xylanase from the marine bacterium Vibrio sp. AX-4 (XYL4) exhibited a modular structure consisting of three modules: an N-terminal catalytic module belonging to glycoside hydrolase family 26 and two C-terminal xylan-binding modules belonging to carbohydrate-binding module family 31. Despite substantial crystallization screening, crystallization of the recombinant XYL4 was not accomplished. However, the deletion mutant of XYL4, composed of a catalytic module without a xylan-binding module, was crystallized. The crystal belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 51.6, b = 75.8, c = 82.0 A. X-ray diffraction data were collected to 1.44 A resolution.


Subject(s)
Catalytic Domain , Vibrio/classification , Vibrio/enzymology , Xylan Endo-1,3-beta-Xylosidase/chemistry , Crystallization , Crystallography, X-Ray , Marine Biology , Vibrio/genetics , Xylan Endo-1,3-beta-Xylosidase/biosynthesis , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/isolation & purification
20.
FEBS Lett ; 549(1-3): 147-51, 2003 Aug 14.
Article in English | MEDLINE | ID: mdl-12914941

ABSTRACT

A family 2b carbohydrate-binding module from Streptomyces thermoviolaceus STX-II was fused at the carboxyl-terminus of XynB, a thermostable and single domain family 10 xylanase from Thermotoga maritima, to create a chimeric xylanase. The chimeric enzyme (XynB-CBM2b) was purified and characterized. It displayed a pH-activity profile similar to that of XynB and was stable up to 90 degrees C. XynB-CBM2b bound to insoluble birchwood and oatspelt xylan. Whereas its hydrolytic activities toward insoluble xylan and p-nitrophenyl-beta-xylopyranoside were similar to those of XynB, its activity toward soluble xylan was moderately higher than that of XynB.


Subject(s)
Bacterial Proteins/genetics , Carrier Proteins/genetics , Receptors, Cell Surface , Recombinant Fusion Proteins/metabolism , Streptomyces/enzymology , Hydrogen-Ion Concentration , Hydrolysis , Protein Binding , Recombinant Fusion Proteins/genetics , Temperature , Xylan Endo-1,3-beta-Xylosidase/genetics , Xylan Endo-1,3-beta-Xylosidase/metabolism
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