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1.
Adv Drug Deliv Rev ; 197: 114830, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37086917

RESUMEN

Luminescent nanomaterials such as semiconductor nanocrystals (NCs) and quantum dots (QDs) attract much attention to optical detectors, LEDs, photovoltaics, displays, biosensing, and bioimaging. These materials include metal chalcogenide QDs and metal halide perovskite NCs. Since the introduction of cadmium chalcogenide QDs to biolabeling and bioimaging, various metal nanoparticles (NPs), atomically precise metal nanoclusters, carbon QDs, graphene QDs, silicon QDs, and other chalcogenide QDs have been infiltrating the nano-bio interface as imaging and therapeutic agents. Nanobioconjugates prepared from luminescent QDs form a new class of imaging probes for cellular and in vivo imaging with single-molecule, super-resolution, and 3D resolutions. Surface modified and bioconjugated core-only and core-shell QDs of metal chalcogenides (MX; M = Cd/Pb/Hg/Ag, and X = S/Se/Te,), binary metal chalcogenides (MInX2; M = Cu/Ag, and X = S/Se/Te), indium compounds (InAs and InP), metal NPs (Ag, Au, and Pt), pure or mixed precision nanoclusters (Ag, Au, Pt), carbon nanomaterials (graphene QDs, graphene nanosheets, carbon NPs, and nanodiamond), silica NPs, silicon QDs, etc. have become prevalent in biosensing, bioimaging, and phototherapy. While heavy metal-based QDs are limited to in vitro bioanalysis or clinical testing due to their potential metal ion-induced toxicity, carbon (nanodiamond and graphene) and silicon QDs, gold and silica nanoparticles, and metal nanoclusters continue their in vivo voyage towards clinical imaging and therapeutic applications. This review summarizes the synthesis, chemical modifications, optical properties, and bioimaging applications of semiconductor QDs with particular references to metal chalcogenide QDs and bimetallic chalcogenide QDs. Also, this review highlights the toxicity and pharmacokinetics of QD bioconjugates.


Asunto(s)
Grafito , Nanodiamantes , Puntos Cuánticos , Humanos , Puntos Cuánticos/toxicidad , Puntos Cuánticos/química , Silicio/química , Dióxido de Silicio
2.
Sci Total Environ ; 878: 163085, 2023 Jun 20.
Artículo en Inglés | MEDLINE | ID: mdl-36996987

RESUMEN

Corals are the visible indicators of the disasters induced by global climate change and anthropogenic activities and have become a highly vulnerable ecosystem on the verge of extinction. Multiple stressors could act individually or synergistically which results in small to large scale tissue degradation, reduced coral covers, and makes the corals vulnerable to various diseases. The coralline diseases are like the Chicken pox in humans because they spread hastily throughout the coral ecosystem and can devastate the coral cover formed over centuries in an abbreviated time. The extinction of the entire reef ecosystem will alter the ocean and earth's amalgam of biogeochemical cycles causing a threat to the entire planet. The current manuscript provides an overview of the recent advancement in coral health, microbiome interactions and climate change. Culture dependent and independent approaches in studying the microbiome of corals, the diseases caused by microorganisms, and the reservoirs of coral pathogens are also discussed. Finally, we discuss the possibilities of protecting the coral reefs from diseases through microbiome transplantation and the capabilities of remote sensing in monitoring their health status.


Asunto(s)
Antozoos , Microbiota , Animales , Humanos , Ecosistema , Cambio Climático , Arrecifes de Coral
3.
Chem Rec ; 23(3): e202200253, 2023 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-36789795

RESUMEN

Bioconjugated nanomaterials replace molecular probes in bioanalysis and bioimaging in vitro and in vivo. Nanoparticles of silica, metals, semiconductors, polymers, and supramolecular systems, conjugated with contrast agents and drugs for image-guided (MRI, fluorescence, PET, Raman, SPECT, photodynamic, photothermal, and photoacoustic) therapy infiltrate into preclinical and clinical settings. Small bioactive molecules like peptides, proteins, or DNA conjugated to the surfaces of drugs or probes help us to interface them with cells and tissues. Nevertheless, the toxicity and pharmacokinetics of nanodrugs, nanoprobes, and their components become the clinical barriers, underscoring the significance of developing biocompatible next-generation drugs and contrast agents. This account provides state-of-the-art advancements in the preparation and biological applications of bioconjugated nanomaterials and their molecular, cell, and in vivo applications. It focuses on the preparation, bioimaging, and bioanalytical applications of monomodal and multimodal nanoprobes composed of quantum dots, quantum clusters, iron oxide nanoparticles, and a few rare earth metal ion complexes.


Asunto(s)
Nanopartículas , Nanoestructuras , Puntos Cuánticos , Fluorescencia , Medios de Contraste , Nanoestructuras/química , Nanopartículas/química
4.
Microbiol Resour Announc ; 11(10): e0055222, 2022 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-36173428

RESUMEN

The draft genome sequence of Shewanella indica strain MMRF542, which was isolated from a marine sponge (Callyspongia diffusa), is reported. The genome sequence provides insight into the ecological relevance and biotechnological potential of Shewanella species.

5.
Saudi J Biol Sci ; 28(7): 3783-3788, 2021 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-34220232

RESUMEN

Sponges accommodate a diverse group of microorganisms with varied metabolic capabilities. The bacterial associates of sponges are widely studied while our understanding of archaeal counterparts is scanty. In the present study, we report the archaeal associates of two sponges, Pseudoceratina purpurea (NCBI barcode: KX454492) and Cinachyra sp. (NCBI barcode: KX454495), found in the coral reef ecosystems of Gulf of Mannar, India. Archaea in the water column was predominated by members of class Halobacteria of Phylum Euryarchaeota (97%) followed by a minor fraction (3%) of Nitrosopumilus sp. of phylum Thaumarchaeota. Interestingly, Thaumarchaeota was identified as the sole archaeal population associated with the two sponges studied, among which Nitrosopumilus sp. occuppied 80 and 100% of the sequences in the clone library of P. purpurea and Cinachyra sp. respectively. Other archaea found in the P. purpurea were Nitrososphaera (10%) and unclassified ones (10%). The study identified Nitrosopumilus sp. as a unique symbiotic archaeon of sponges, P. purpurea and Cinachyra sp. The existence of host driven factors in selecting specific associates from a diverse group of archaea in the environment may need further investigations.

6.
3 Biotech ; 11(2): 66, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33489684

RESUMEN

Probiotics inspired by host-microbe interactions in the natural ecosystem are propitious in controlling bacterial infections in aquaculture and veterinary systems. Here we report the isolation and characterization of pathogenic Vibrio spp. and lactic acid bacteria from an intensive culture system of Litopenaeus vannamei and natural ecosystem, respectively. The pathogen isolated from the gut of L. vannamei showing the symptoms of white gut disease were identified as V. parahaemolyticus and V. campbelli. Both the pathogens expressed the virulence genes, rtxA, and tcpA and were showing multiple antibiotic resistance (MAR) index of more than 0.5. The lactic acid bacteria isolated from the sediment and gut of benthic organisms (shrimp and polychaetes) collected from a tropical estuary were classified as member of 9 OTUs such as Pediococcus stilessi, Lactobacillus fermentum, L. rhamnosus, Weissella cibaria, Enterococcus durans, E. fecalis, Streptococcus gallolyticus and L. garvieae. Majority of these isolates were facultative in nature and were able to tolerate gastric juice and bile salt. Out of 83 bacteria isolated from sediment and gut, 36 showed abilities to reduce the pH of culture medium to less than five. Many of these isolates (34 Nos.) showed production of hydrolytic enzymes and secondary metabolites with antagonistic activity against both the pathogens (1 No.) or separately toward V. parahaemolyticus (9 Nos.) and V. campbelli (11 Nos.). Overall, the current study proposes a natural ecosystem as a potential source of lactic acid bacteria with probiotic potentials to prevent the vibriosis disease outbreaks in shrimp aquaculture systems. Further studies are required to understand the abilities of lactic acid bacteria to colonize shrimp intestine, stimulate immune system and manipulate microbiome. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-020-02618-2.

7.
Antonie Van Leeuwenhoek ; 114(1): 23-35, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33230720

RESUMEN

Herein we report the isolation of a novel actinomycete, strain MCCB 268T, from the sediment sample collected from a high Arctic fjord Kongsfjorden. MCCB 268T showed greater than 97% 16S rRNA gene sequence similarity with those of Pseudonocardia konjuensis LM 157T (98.06%), Pseudonocardia soli NW8-21 (97.22%) Pseudonocardia endophytica YIM 56035 (97.08%) and Pseudonocardia nantongensis KLBMP 1282 (97.34%) showing that the strain should be assigned to the genus Pseudonocardia. DNA-DNA hybridization with Pseudonocardia konjuensis LM 157T showed only 41.5% relatedness to strain MCCB 268T. The whole genome of the strain MCCB 268T was sequenced. Whole-genome average nucleotide identity, dDDH (%) and genome tree analysis demonstrated that strain significantly differed from other Pseudonocardia species. The G + C content was 70.5 mol%. MCCB 268T exhibited in vitro cytotoxicity and through bioassay guided fractionation followed by HPLC separation a cytotoxic compound (I) was isolated. The compound (I) was identified as 1-acetyl-ß-carboline through NMR spectra and high-resolution mass spectrometry. Compound (I) showed cytotoxicity against lung cancer cell line and mode of anticancer activity was found to be through the induction of apoptosis. Based on the genotypic and phenotypic features, MCCB 268T ought to be classified as a novel species under the genus Pseudonocardia for which the name Pseudonocardia cytotoxica sp. nov. is proposed (= CCUG72333T = JCM32718T).


Asunto(s)
Actinobacteria , Actinobacteria/genética , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano/genética , Estuarios , Ácidos Grasos/análisis , Hibridación de Ácido Nucleico , Filogenia , Pseudonocardia , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
8.
Environ Sci Pollut Res Int ; 28(1): 724-737, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-32820445

RESUMEN

Dynamics of Vibrio populations in aquatic environments are of concern, as they encompass members pathogenic to humans as well as marine flora and fauna. Spatiotemporal distribution of its culturable abundance for a range of physicochemical and biological parameters in the Cochin estuary (CE), one of the largest tropical monsoonal estuary along the southwest coast of India, witnessed a proliferation of this bacterial group (707 ± 196 CFU ml-1) in downstream stations during a relative dry period. The study for the first time employed classification and regression tree (CART) along with multiple linear regression (MLR) based approaches to explore the nonlinear and linear interactions, respectively, among environmental variables regulating Vibrio abundance in CE. Both the techniques were on consensus to ascertain salinity as the primary determinant of Vibrio dynamics, during the entire sampling period regardless of the seasons, viz., dry and wet. Nevertheless, CART outperformed MLR in performance index, suggesting that in a dynamic system like estuaries, usage of the latter is limited by complex nonlinear relationships among environmental variables. According to CART, Vibrio proliferation observed in downstream stations of the estuary (salinity ≥ 13.4 psu) during a relative dry period was driven by eutrophication (dissolved inorganic phosphate ≥ 1.48 µM L-1) associated with reduced flushing resulting in an oxygen-limited environment (dissolved oxygen < 4.56 ml L-1), wherein phytoplankton production diverts to support microbes. Our results imply that anthropogenic activities and sea level rise in future may prompt Vibrio proliferation, to be a concern for public health and impinge on fisheries yield from tropical estuaries.


Asunto(s)
Estuarios , Vibrio , Monitoreo del Ambiente , Humanos , India , Fitoplancton , Salinidad , Estaciones del Año
9.
J Family Med Prim Care ; 9(7): 3277-3280, 2020 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-33102283

RESUMEN

BACKGROUND: The prevalence of youth myopia has increased significantly in the local communities of Saudi Arabia; school children and parents are unaware of the knowledge and complications of myopia. OBJECTIVE: To initiate and increase the awareness of myopia among school students and to prevent future complications. METHOD: An organized, questionnaire with 14 questions was prepared to analyze the school students' knowledge attitudes and practice about myopia. The study was conducted in a local school in Marat city, Saudi Arabia, between April 2019 and September 2019. The sample size includes 100 male students of age group 7 years to 14 years. RESULTS: 82% of students have heard about myopia with the majority source of information being parents (62%) and teachers (35%). 45% of the students reported a negative attitude toward the eye-glasses users. 20% of students have reported the use of eye-glasses. Most of the students reported uncomfortable feel and shyness due to wearing of eye-glasses which limits their use. CONCLUSION: The public awareness programs by the local governing bodies, local hospitals, health workers, medical colleges, and non-government organizations should be organized in each local school to increase the school students' knowledge, positive attitude, and practice toward myopia.

10.
Mar Pollut Bull ; 160: 111575, 2020 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-32810667

RESUMEN

The effect of heavy metal pollution on the microbiome of cyanobacteria in Cochin estuary (CE) on the southwest coast of India is reported in the study. Statistically significant difference in heavy metal concentration was observed between water, suspended particulate matter (SPM) and sediment. The Zn, Cd, Cu, Ni and Cr were 2-6 times higher in the SPM compared with the sediment, while Pb was 10 to 25 times higher. Although nearly 60% of the species diversity of microbiome was common between cyanobacteria enriched from the upstream (S1S) and downstream (S11B), there was a difference in the major groups of heterotrophic bacterial associates. Proteobacteria was the dominant phylum (>80%) in S1S, while it was second only (27.5%) after Planctomycetes (37.4%) in S11B. The results of the current study indicate that the pollution can influence an ecosystem at the micro-niche level.


Asunto(s)
Cianobacterias , Metales Pesados , Microbiota , Contaminantes Químicos del Agua , Monitoreo del Ambiente , Estuarios , Sedimentos Geológicos , India , Metales Pesados/análisis , Contaminantes Químicos del Agua/análisis
11.
World J Microbiol Biotechnol ; 36(5): 65, 2020 Apr 22.
Artículo en Inglés | MEDLINE | ID: mdl-32322999

RESUMEN

Estuaries being the connecting link between terrestrial and marine environment, experience spatial variations in the hydrographic variables as well as concentrations of pollutants. The present study reports a contrasting difference in the metal tolerance and enzyme activity of particle-associated bacteria (PAB) isolated from the upstream and downstream reaches of a tropical estuary [Cochin Estuary (CE) in the southwest coast of India], exposed to different levels of heavy metal contamination. The upstream of the estuary has been overloaded with heavy metals in the last few decades, while the downstream is less polluted. There were only 25% of culturable PAB phylogenetically common in both upstream and downstream. The PAB isolated from the upstream were dominated by γ-proteobacteria (48.1%) followed by α-proteobacteria (25.0%), while it was in the reverse order of α-proteobacteria (45.9%) and γ-proteobacteria (36.1%) in the downstream. More number of PAB from the upstream showed tolerance to higher concentrations of Zn and Cd. The Acinetobacter sp. MMRF1051 isolated from the upstream showed tolerance up to 250 mM Zn, 100 mM Cd, and 250 mM Ni. The enzyme expression profile of PAB from downstream was in the order of lipase > phosphatase > ß-glucosidase > aminopeptidase, while it was in the order of ß-glucosidase > lipase > aminopeptidase > phosphatase in the upstream of the estuary. The present study shows the selective pressure exerted by heavy metal pollution on the diversity of culturable bacteria associated with particulate matter in a tropical estuary. Also, the variation in their enzyme activities may impinge the remineralization of particulate organic matter (POM) in the system and may impart adverse impacts on ecosystem functioning.


Asunto(s)
Estuarios , Sedimentos Geológicos/química , Metales Pesados/toxicidad , Material Particulado/química , Microbiología del Agua , Contaminantes Químicos del Agua/análisis , Acinetobacter/clasificación , Acinetobacter/efectos de los fármacos , Acinetobacter/enzimología , Acinetobacter/aislamiento & purificación , Alphaproteobacteria/clasificación , Alphaproteobacteria/efectos de los fármacos , Alphaproteobacteria/enzimología , Alphaproteobacteria/aislamiento & purificación , Fenómenos Fisiológicos Bacterianos/efectos de los fármacos , Monitoreo del Ambiente , Firmicutes/clasificación , Firmicutes/efectos de los fármacos , Firmicutes/enzimología , Firmicutes/aislamiento & purificación , Gammaproteobacteria/clasificación , Gammaproteobacteria/efectos de los fármacos , Gammaproteobacteria/enzimología , Gammaproteobacteria/aislamiento & purificación , India , Metales Pesados/análisis , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/aislamiento & purificación
12.
ACS Appl Bio Mater ; 2(11): 4681-4686, 2019 Nov 18.
Artículo en Inglés | MEDLINE | ID: mdl-35021465

RESUMEN

Control measures against antimicrobial resistant bacterial pathogens are important challenges in our daily life. In this study, we discuss the sensitivity and resistance of four bacterial pathogens, Vibrio alginolyticus, Escherichia coli, Staphylococcus aureus, and Bacillus subtilis, to silver-silica hybrid nanoparticles. Successively, by combining with an efflux pump blocking agent Verapamil, we find that these hybrid nanoparticles induce complete mortality to even the most resistive S. aureus. The above pathogens are selected from a pool of 100 bacterial strains resistant to silver nitrate. While S. aureus shows increased resistance to the nanoparticles, the cell wall integrity and genetic stability of V. alginolyticus and E. coli are compromised in the presence of the hybrid nanoparticles. These studies suggest that the antimicrobial properties of the nanoparticles against Gram-negative pathogens originate from increased oxidative stress, which is confirmed by the blocking of reactive oxygen species (ROS) using scavengers such as ascorbic acid and observing DNA damage. The antimicrobial property of the nanoparticle when combined with its nontoxic nature to mammalian cells makes it a promising agent for controlling drug-resistant Gram-negative pathogens.

13.
J Basic Microbiol ; 57(12): 1010-1017, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28949417

RESUMEN

We examined the diversity of Planctomycetes in the sediment sample collected from an oxygen minimum zone (OMZ) in the southeast Arabian Sea. A 16SrRNA gene library was constructed using the forward primer specific for Planctomycetes and a universal reverse primer. The 237 sequences obtained were grouped into 130 operational taxonomic units, and the majority of them were clustered with phylum Planctomycetes (45.0%) and unclassified bacteria (27.0%). There were sequences that clustered with distantly separated monophyletic groups such as Latescibacteria (9%), Actinobacteria (6%), Proteobacteria (5%), and others (8%). Among Planctomycetes, 55.7% belonged to family Planctomycetaceae, followed by unclassified Planctomycetes (25.0%) and family candidatus Brocadiaceae (19.2%). The family Planctomycetaceae included the genera Blastopirellula (11.5%), Rhodopirellula (3.8%), and a large number unclassified Planctomycetaceae sequences (40.4%). The members of family candidatus Brocadiaceae included the genera candidatus Scalindua (11.5%), candidatus Brocadia (1.9%) and unclassified genera (5.8). Our study indicates the relatively large diversity of Planctomycetes in sediments underlying the oxygen minimum zone of Arabian Sea. Also, the sequence data generated in the present study may support the efforts on isolation and purification of Planctomycetes from marine environment for understanding their biogeochemical significance.


Asunto(s)
Sedimentos Geológicos , Planctomycetales/clasificación , Planctomycetales/aislamiento & purificación , Anaerobiosis , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Océanos y Mares , Filogenia , Planctomycetales/genética , Planctomycetales/fisiología , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN
14.
Appl Biochem Biotechnol ; 183(1): 396-411, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28315112

RESUMEN

Melanin is a photo-protective polymer found in many organisms. Our research shows that the bacteria associated with darkly pigmented sponges (Haliclona pigmentifera, Sigmadocia pumila, Fasciospongia cavernosa, Spongia officinalis, and Callyspongia diffusa) secrete non-cytotoxic melanin, with antioxidant activity that protects animal cells from photo-toxicity. Out of 156 bacterial strains screened, 22 produced melanin and these melanin-producing bacteria (MPB) were identified as Vibrio spp., Providencia sp., Bacillus sp., Shewanella sp., Staphylococcus sp., Planococcus sp., Salinococcus sp., and Glutamicibacter sp. Maximum melanin production was exhibited by Vibrio alginolyticus Marine Microbial Reference Facility (MMRF) 534 (50 mg ml-1), followed by two isolates of Vibrio harveyi MMRF 535 (40 mg ml-1) and MMRF 546 (30 mg ml-1). Using pathway inhibition assay and FT-IR spectral analysis, we identified the melanin secreted into the culture medium of MPB as 1,8-dihydroxynaphthalene-melanin. The bacterial melanin was non-cytotoxic to mouse fibroblast L929 cells and brine shrimps up to a concentration of 200 and 500 ppm, respectively. Bacterial melanin showed antioxidant activity at very low concentration (IC50-9.0 ppm) and at 50 ppm, melanin protected L929 cells from UV-induced intracellular reactive oxygen stress. Our study proposes sponge-associated bacteria as a potential source of non-cytotoxic melanin with antioxidant potentials.


Asunto(s)
Bacterias , Fibroblastos/metabolismo , Melaninas , Poríferos/microbiología , Rayos Ultravioleta/efectos adversos , Animales , Bacterias/química , Bacterias/crecimiento & desarrollo , Bacterias/aislamiento & purificación , Línea Celular , Fibroblastos/patología , Melaninas/química , Melaninas/farmacología , Ratones
15.
3 Biotech ; 6(2): 238, 2016 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28330310

RESUMEN

Marine sediments accommodate plethora of diverse microorganisms with varying ecological functions. In the present study, we isolated bacteria from surficial sediments of south east Arabian Sea (AS) and evaluated their bioactive potentials. A total of 131 isolates belonging to the phylum: γ-Proteobacteria (63%), Bacillales (34%) and Micrococcaceae (3%) were isolated. Among these, about 40% of the isolates showed the presence of secondary metabolite biosynthetic genes such as PKS or NRPS or both. Organic extracts of nearly 50% of these organisms were cytotoxic to human breast cancer MCF-7 cells and were bactericidal to human pathogens, Escherichia coli and Pseudomonas sp., while 20-30% of them were bactericidal to Vibrio sp. and Staphylococcus sp. too. In all, 8 isolates, belonging to Pseudomonas spp., Bacillus sp. and/or Lysinibacillus sp. displayed high level of bactericidal/cytotoxic properties. The study proposes AS sediment as a rich source for microorganisms with prospective bioactive molecules.

16.
PLoS One ; 10(5): e0123222, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-25938436

RESUMEN

Sponges are abundant, diverse and functionally important organisms of coral reef ecosystems. Sponge-associated microorganisms have been receiving greater attention because of their significant contribution to sponge biomass, biogeochemical cycles and biotechnological potentials. However, our understanding of the sponge microbiome is limited to a few species of sponges from restricted geographical locations. Here, we report for the first time the bacterial diversity of two cohabiting sponges, viz. Cinachyra cavernosa and Haliclona pigmentifera, as well as that in the ambient water from the coral reef ecosystems of the Gulf of Mannar, located along the southeast coast of India. Two hundred and fifty two clones in the 16S rRNA gene library of these sponges were grouped into eight distinct phyla, of which four belonged to the core group that are associated only with sponges. Phylogenetic analysis of the core bacteria showed close affinity to other sponge-associated bacteria from different geographical locations. γ-Proteobacteria, Chloroflexi, Planctomycetes and Deferribacter were the core groups in C. cavernosa while ß and δ-Proteobacteria performed this role in H. pigmentifera. We observed greater OTU diversity for C. cavernosa (Hǀ 2.07) compared to H. pigmentifera (Hǀ 1.97). UniFrac analysis confirmed the difference in bacterial diversity of the two sponge species and also between the sponges and the reef water (p<0.001). The results of our study restate the existence of a host driven force in shaping the sponge microbiome.


Asunto(s)
Bacterias/genética , Biodiversidad , Arrecifes de Coral , Haliclona/microbiología , Poríferos/microbiología , Animales , Análisis por Conglomerados , Biblioteca de Genes , Genes Bacterianos , Haliclona/ultraestructura , India , Datos de Secuencia Molecular , Filogenia , Poríferos/ultraestructura , Análisis de Componente Principal , ARN Ribosómico 16S/genética
17.
Spectrochim Acta A Mol Biomol Spectrosc ; 136 Pt B: 327-33, 2015 Feb 05.
Artículo en Inglés | MEDLINE | ID: mdl-25448936

RESUMEN

Highly luminescent, manganese doped, zinc sulphide (ZnS:Mn) nanocrystals biofunctionalized with chitosan and various aminoacids such as L-citrulline, L-lysine, L-arginine, L-serine, L-histidine and glycine were synthesized by chemical capping co-precipitation method at room temperature, which is a simple and cost effective technique. The synthesized nanocrystals were structurally characterized by TEM, XRD, EDXS and FT-IR spectroscopy techniques. They possess high colloidal stability with strong orange red photoluminescence emission at 598 nm. The intensity of orange red emission has been observed to be maximum in L-citrulline capped ZnS:Mn nanocrystals in which the emission at 420 nm is effectively quenched by surface passivation due to capping. Taking into consideration the prospects of these highly luminescent, bio-compatible ZnS:Mn nanocrystals in bio-imaging applications, cytotoxicity studies were conducted to identify the capping combination which would accomplish minimum toxic effects. ZnS:Mn nanocrystals biofunctionalized with chitosan, L-citrulline, glycine, L-artginine, L-serine and L-histidine showed least toxicity up to 10 nM concentrations in mouse fibroblast L929 cells, which further confirms their cytocompatibility. Also the ZnS:Mn nanocrystals biofunctionalized with l-arginine showed maximum uptake in in vitro studies carried out in human embryonic kidney cells, HEK-293T, which shows the significant role of this particular amino acid in fetoplacental nutrition. The present study highlights the suitability of aminoacid conjugated ZnS:Mn nanocrystals, as promising candidates for biomedical applications.


Asunto(s)
Aminoácidos/química , Quitosano/química , Endocitosis/efectos de los fármacos , Manganeso/toxicidad , Nanopartículas/toxicidad , Sulfuros/toxicidad , Compuestos de Zinc/toxicidad , Animales , Muerte Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Células HEK293 , Humanos , Luminiscencia , Ratones , Nanopartículas/ultraestructura , Espectroscopía Infrarroja por Transformada de Fourier , Difracción de Rayos X
18.
ACS Nano ; 6(5): 3776-88, 2012 May 22.
Artículo en Inglés | MEDLINE | ID: mdl-22468986

RESUMEN

Protection of genes against enzymatic degradation and overcoming of cellular barriers are critical for efficient gene delivery. The effectiveness of gene delivery by nonviral vectors depends mostly on the extent of DNA packaging or condensation. We show that Förster resonance energy transfer (FRET)-mediated photodecomposition of undesired acceptors in doubly labeled plasmid DNA (pDNA) and FRET recovery after acceptor photodecomposition (FRET-RAP) are effective methods for the detection of DNA condensation and decondensation. Our hypothesis is that undesired acceptors within the Förster distance of highly-photostable donors in precondensed DNA can be selectively photodecomposed by FRET. We investigate this hypothesis by the random labeling of pcDNA3.1-GL3 and pUC18DNA with quantum dots (QDs) as the energy donor and AlexaFluor594 or Cy5 as the acceptor. At first, the random labeling generates efficient FRET, also called intrinsic FRET, in precondensed DNA, which prevents us from decoding any changes in the FRET efficiency during DNA condensation. Next, we suppressed the intrinsic FRET by the FRET-mediated photodecomposition of acceptors within the Förster distance of QDs. Conversely, many acceptors kept intact beyond the Förster distance provide us with high FRET efficiency during the condensation of pDNA using protamine. Further, the FRET efficiency is significantly decreased during the decondensation of DNA using heparan sulfate and glutathione. The random labeling of DNA using excess acceptors around photostable donors followed by the FRET-mediated photodecomposition of undesired acceptors can be a promising method for not only the sensitive detection of DNA condensation by FRET but also the customization of biomolecular sensors.


Asunto(s)
ADN/genética , Procesos Fotoquímicos , Plásmidos , Puntos Cuánticos , Transferencia Resonante de Energía de Fluorescencia , Microscopía de Fuerza Atómica
19.
Microb Biotechnol ; 5(1): 59-68, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21951316

RESUMEN

We propose antimicrobial photodynamic therapy (aPDT) as an alternative strategy to reduce the use of antibiotics in shrimp larviculture systems. The growth of a multiple antibiotic resistant Vibrio harveyi strain was effectively controlled by treating the cells with Rose Bengal and photosensitizing for 30 min using a halogen lamp. This resulted in the death of >50% of the cells within the first 10 min of exposure and the 50% reduction in the cell wall integrity after 30 min could be attributed to the destruction of outer membrane protein of V. harveyi by reactive oxygen intermediates produced during the photosensitization. Further, mesocosm experiments with V. harveyi and Artemia nauplii demonstrated that in 30 min, the aPDT could kill 78.9% and 91.2% of heterotrophic bacterial and Vibrio population respectively. In conclusion, the study demonstrated that aPDT with its rapid action and as yet unreported resistance development possibilities could be a propitious strategy to reduce the use of antibiotics in shrimp larviculture systems and thereby, avoid their hazardous effects on human health and the ecosystem at large.


Asunto(s)
Acuicultura/métodos , Artemia/microbiología , Fármacos Fotosensibilizantes/farmacología , Vibrio/efectos de la radiación , Animales , Artemia/crecimiento & desarrollo , Larva/crecimiento & desarrollo , Larva/microbiología , Luz , Viabilidad Microbiana/efectos de la radiación , Vibrio/efectos de los fármacos , Vibrio/crecimiento & desarrollo
20.
Environ Pollut ; 159(10): 2775-80, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-21665339

RESUMEN

Over the past three decades heavy metal pollution has increased substantially in Cochin estuary, south west coast of India. Here we studied the distribution, diversity and enzyme expression profile of culturable microbial population along a pollution gradient. The distribution of resistance against 5 mM concentration of Zn, Co, Ni and Cu was observed among 90-100% of bacterial isolates retrieved from highly polluted Eloor, whereas it was less than 40% in Vypin and Munambam. Similarly, there was a difference in the distribution and diversity of bacterial phyla with predominance of Proteobacteria in Eloor and Firmicutes in Munambam and Vypin. We observed that 75-100% of the organisms retrieved from Eloor had low levels of expression for hydrolytic enzyme. In conclusion, the heavy metal pollution in Cochin estuary brought in reduction/adaptation in the distribution, diversity and enzyme expression profile of bacteria, which may impart adverse impacts on ecosystem functioning.


Asunto(s)
Adaptación Fisiológica/efectos de los fármacos , Bacterias/efectos de los fármacos , Metales Pesados/toxicidad , Microbiología del Agua , Contaminantes Químicos del Agua/toxicidad , Bacterias/clasificación , Bacterias/enzimología , Fenómenos Fisiológicos Bacterianos/efectos de los fármacos , Biodiversidad , Ecosistema , Agua Dulce/química , Sedimentos Geológicos/química , Procesos Heterotróficos , India , Metales Pesados/análisis , Agua de Mar/química , Contaminantes Químicos del Agua/análisis
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