Oxidative stress in acute pancreatitis: lost in translation?

Oxidative stress has been implicated in the pathogenesis of acute pancreatitis, a severe and debilitating inflammation of the pancreas that carries a significant mortality, and which imposes a considerable financial burden on the health system due to patient care. Although extensive efforts have been directed towards the elucidation of critical underlying mechanisms and the identification of novel therapeutic targets, the disease remains without a specific therapy. In experimental animal models of acute pancreatitis, increased oxidative stress and decreased antioxidant defences have been observed, changes also detected in patients clinically. However, despite the promise of studies evaluating the effects of antioxidants in these model systems, translation to the clinic has thus far been disappointing. This may reflect many factors involved in the design of both preclinical and clinical evaluations of antioxidant therapy, not least the fact that most experimental studies have focussed on pre-treatment rather than post-injury assessment. This review has examined evidence relating to the involvement of oxidative stress in the pathophysiology of acute pancreatitis, focussing on experimental models and the clinical experience, including the experimental techniques employed and potential of antioxidant therapy.

Water polarization induced by thermal gradients: the extended simple point charge model (SPC/E).

We investigate the non-equilibrium response of extended simple point charge (SPC/E) water to thermal gradients. Using non-equilibrium molecular dynamics simulations, we show that SPC/E water features the thermo-polarization orientation effect, namely, water becomes polarized as a response to a thermal gradient. The polarization field increases linearly with the thermal gradient, in agreement with predictions of non-equilibrium thermodynamics theory. This observation confirms the generality of the thermo-polarization effect, first reported using the Modified Central Force Model (MCFM), and shows this physical effect is present irrespective of the water model details, in particular, dipole moment magnitude and model flexibility. The magnitude of the effect is the same for both models, although the sign of the electrostatic field is reversed in going from the MCFM to the SPC/E model. We further analyze the impact that the molecular geometry and mass distribution has on the magnitude of the polarization. Our results indicate that the thermo-polarization effect should be observed in a wide range of polar fluids, including fluids where hydrogen bonding is not present. Using various molecular models, we show that the polarization of these fluids under appropriate thermodynamic conditions can be of the same order or stronger than in water.

Statistical mechanics of coarse graining: estimating dynamical speedups from excess entropies.

The excess entropy of fluids has been shown to play a decisive role in the determination of dynamical properties [Y. Rosenfeld, Phys. Rev. A 15, 2545 (1977)]. We argue that it could play an equally important role in connecting dynamical properties of atomistic and coarse-grained models of molecular fluid systems. Molecular dynamics simulations for an atomistic and a coarse-grained model of water confirm the validity of this conjecture, showing that the sizable enhancement of the diffusion rate upon coarse-graining is a simple function of the difference in the excess entropy of the two models. This empirical observation could ease the way to a first-principles prediction of the relation of dynamical properties estimated from models at different resolution.

Computational verification of two universal relations for simple ionic liquids. Kinetic properties of a model 2:1 molten salt.

Two semianalytical relations [Nature, 1996, 381, 137 and Phys. Rev. Lett. 2001, 87, 245901] predicting dynamical coefficients of simple liquids on the basis of structural properties have been tested by extensive molecular dynamics simulations for an idealized 2:1 model molten salt. In agreement with previous simulation studies, our results support the validity of the relation expressing the self-diffusion coefficient as a function of the radial distribution functions for all thermodynamic conditions such that the system is in the ionic (ie., fully dissociated) liquid state. Deviations are apparent for high-density samples in the amorphous state and in the low-density, low-temperature range, when ions condense into AB(2) molecules. A similar relation predicting the ionic conductivity is only partially validated by our data. The simulation results, covering 210 distinct thermodynamic states, represent an extended database to tune and validate semianalytical theories of dynamical properties and provide a baseline for the interpretation of properties of more complex systems such as the room-temperature ionic liquids.

Urinalysis in Western culture: a brief history.

Today physicians use urine to diagnose selective conditions but from ancient times until the Victorian era, urine was used as the primary diagnostic tool. Laboratory medicine began with the analysis of human urine, which was called uroscopy and today is termed urinalysis. Uroscopy was the mirror of medicine for thousands of years. From a liquid window through which physicians felt they could view the body's inner workings. Numerous, somewhat accurate, physiologic theories arose from uroscopy. Then the importance of urinary diagnosis became exaggerated, and increasingly complex, until physicians required only the presence of urine, not patients, to diagnose disease. Uroscopy then escaped medical control, becoming first a home health aid and then a tool of uneducated practitioners. Thomas Brian led a medical rebellion against all uses of uroscopy and published the Pisse Prophet, a book that devastated uroscopy.

New sodalite frameworks; synthetic tugtupite and a beryllosilicate framework with a 3:1 Si:Be ratio.

Compounds of the formula Na8[Si(6 +y)Be(y)Al(6 - 2y)O24]X2, with X = Cl and Br, and y = 1, 2 and 3 have been synthesised and structurally characterised by combined powder X-ray and neutron diffraction profile analysis. These materials adopt the sodalite framework (SOD) with the tetrahedral species, BeO4, AlO4 and SiO4, disordered across the framework positions. Na8[Si8Be2Al2O24]Cl2, (y = 2), is a synthetic analogue of the naturally occurring semi-precious gemstone tugtupite, while Na8[Si9Be3O24]X2, X = Cl and Br represents a new tetrahedral framework stoichiometry with a Si ratio Be ratio of 3 ratio 1. Additional characterisation using 29Si MASNMR, IR spectroscopy and high-temperature, neutron diffraction show that the observed structure-property trends found when modelling sodalite materials can be extended to these new framework compositions.

Evaluation of an extensive tuberculosis contact investigation in an urban community and jail.

SETTING: Urban community and jail. OBJECTIVES/DESIGN: Evaluate outcome and process of an extensive tuberculosis contact investigation, including completion of treatment of latent TB infection (TLTBI). RESULTS: Between April 2000 and September 2001, 18 epidemiologically-linked tuberculosis cases were identified; 15 were culture-confirmed, all with a matching 14-band DNA fingerprint pattern. The source case had cavitary pulmonary disease and had been incarcerated 4 months prior to diagnosis. Sixty-six of 67 (99%) community contacts and 221/344 (64%) jail contacts were evaluated. The presumed new infection rate was 56% for community contacts (11 cases, 25 tuberculin skin test [TST] positive) and 20% for jail contacts (6 cases, 32 TST converters). Screening results for 113 (33%) jail contacts were obtained in the jail TST registry upon rearrest. All identified cases completed treatment. Of 22 community contacts initiating TLTBI, 11 completed (44% of infected, 50% of initiators). Of 32 infected jail contacts, 12 initiated TLTBI (all who remained incarcerated), and 10 completed (31% of infected, 83% of initiators). None of 20 additional in-fected jail contacts, all of whose TST conversions were identified with re-arrest data, were subsequently located. Two additional related cases have been identified as of October 2003. CONCLUSIONS: Close health department/corrections collaboration facilitated this extensive contact investigation, which identified high Mycobacterium tuberculosis transmission rates and controlled the outbreak. Numerous contacts were identified and screened, but rates of treatment completion for infected contacts were low. Novel strategies are needed to maximize the number of infected contacts who are not only identified and evaluated, but completely treated.

The HMG-domain protein BAP111 is important for the function of the BRM chromatin-remodeling complex in vivo.

The Drosophila trithorax group gene brahma (brm) encodes the ATPase subunit of a SWI/SNF-like chromatin-remodeling complex. A key question about chromatin-remodeling complexes is how they interact with DNA, particularly in the large genomes of higher eukaryotes. Here, we report the characterization of BAP111, a BRM-associated protein that contains a high mobility group (HMG) domain predicted to bind distorted or bent DNA. The presence of an HMG domain in BAP111 suggests that it may modulate interactions between the BRM complex and chromatin. BAP111 is an abundant nuclear protein that is present in all cells throughout development. By using gel filtration chromatography and immunoprecipitation assays, we found that the majority of BAP111 protein in embryos is associated with the BRM complex. Furthermore, heterozygosity for BAP111 enhanced the phenotypes resulting from a partial loss of brm function. These data demonstrate that the BAP111 subunit is important for BRM complex function in vivo.

Mutations in Drosophila heat shock cognate 4 are enhancers of Polycomb.

The homeotic genes controlling segment identity in Drosophila are repressed by the Polycomb group of genes (PcG) and are activated by genes of the trithorax group (trxG). An F(1) screen for dominant enhancers of Polycomb yielded a point mutation in the heat shock cognate gene, hsc4, along with mutations corresponding to several known PcG loci. The new mutation is a more potent enhancer of Polycomb phenotypes than an apparent null allele of hsc4 is, although even the null allele occasionally displays homeotic phenotypes associated with the PcG. Previous biochemical results had suggested that HSC4 might interact with BRAHMA, a trxG member. Further analyses now show that there is no physical or genetic interaction between HSC4 and the Brahma complex. HSC4 might be needed for the proper folding of a component of the Polycomb repression complex, or it may be a functional member of that complex.

The ISWI chromatin-remodeling protein is required for gene expression and the maintenance of higher order chromatin structure in vivo.

Drosophila ISWI, a highly conserved member of the SWI2/SNF2 family of ATPases, is the catalytic subunit of three chromatin-remodeling complexes: NURF, CHRAC, and ACF. To clarify the biological functions of ISWI, we generated and characterized null and dominant-negative ISWI mutations. We found that ISWI mutations affect both cell viability and gene expression during Drosophila development. ISWI mutations also cause striking alterations in the structure of the male X chromosome. The ISWI protein does not colocalize with RNA Pol II on salivary gland polytene chromosomes, suggesting a possible role for ISWI in transcriptional repression. These findings reveal novel functions for the ISWI ATPase and underscore its importance in chromatin remodeling in vivo.