DFT exploration of adsorptive performances of borophene to small sulfur-containing gases.

Density functional theory (DFT) calculations were applied to study the ability of B36 to adsorb H2S, SO2, SO3, CH3SH, (CH3)2S, and C4H4S gases. Several exchange-correlation including B97D, PBE, B3LYP, M062X, and WB97XD were utilized to evaluate adsorption energies. The initial results showed that boundary boron atoms are the most appropriate interaction sites. The adsorption energies, electron density, electron localized function, and differential charge density plots confirmed the formation of chemical covalent bonds only between SOx and B36. The results of thermochemistry analysis revealed the exothermic nature of the adsorption of sulfur-containing gases on B36; the highest values of ∆H298 were found for SO3/B36 and SO2/B36 systems. The electronic absorption spectra and DOS of B36 did not exhibit significant variations after gases adsorption, while the modeled CD spectra showed a remarkable change in the case of the SOx/B36 system. Accordingly, B36 is not suggested for detecting the studied gases. The effect of imposing mono vacancy defect and external electric field to the adsorption of titled gases on the sorbent showed, while the former did not affect the adsorption energies significantly the later improved the adsorption of gas molecules on the B36 system. The results of the current study could provide deeper molecular insight on the removal of SOx gases by B36 system.

Detection of nucleobases on borophene nanosheet: A DFT investigation.

In this paper, we present a computational study investigating the electronic properties of DNA nucleobases (Adenine, Guanine, Cytosine and Thymine) on χ3 borophene using a combination of density functional theory (DFT) and non-equilibrium Green's function (NEGF) formalism.The adsorption energy, equilibrium distance, net charge of transfer, and density of states (DOSs) are obtained at different molecule orientations and selective positions.The most stable geometries of DNA molecules on χ3 borophene are also determined.By using (NEGF) formalism, the electronic transmission and electrical current are calculated separately as a function of applied bias voltage for each nucleobase. We find that attaching this molecule to borophene changes the electrical conductivity.Results indicate the strong potential of borophene in adsorption of the DNA molecules, meaning this two-dimensional material could be a suitable candidate for future DNA sequencing devices.

Low energy optical excitations as an indicator of structural changes initiated at the termini of amyloid proteins.

There is a growing body of experimental work showing that protein aggregates associated with amyloid fibrils feature intrinsic fluorescence. In order to understand the microscopic origin of this behavior observed in non-aromatic aggregates of peptides and proteins, we conducted a combined experimental and computational study on the optical properties of amyloid-derived oligopeptides in the near-UV region. We have focused on a few model systems having charged termini (zwitterionic) or acetylated termini. For the zwitterionic system, we were able to simulate the longer tail absorption in the near UV (250-350 nm), supporting the experimental results in terms of excitation spectra. We analyzed the optical excitations responsible for the low-energy absorption and found a large role played by charge-transfer states around the termini. These charge-transfer excitations are very sensitive to the conformation of the peptide and in realistic fibrils may involve inter and intra chain charge reorganization.

Theoretical description of efficiency enhancement in DSSCs sensitized by newly synthesized heteroleptic Ru complexes.

Recently, some new series of heteroleptic ruthenium-based dyes, the so-called RD dyes, were designed and synthesized showing better performances compared to the well-known homoleptic N719. In this work, using the density-functional theory and its time-dependent extension, we have investigated the electronic structure and absorption spectra of these newly synthesized dyes, and compared the results to those of N3 dye to describe the variations of the properties due to the molecular engineering of the ancillary ligand. We have shown that the calculation results of the absorption spectra for these dyes using the PBE0 for the exchange-correlation functional are in better agreement with the experiment than using B3LYP or range-separated CAM-B3LYP. We have also derived a formula based on the DFT and used it to visually describe the level shifts in a solvent. The higher Jsc observed in these new dyes is explained by the fact that here, in contrast to N3, the excitation charge was effectively transferred to the anchoring ligand. Furthermore, we have shown that the difference dipole moment vectors of the ground and excited states can be used to determine the charge-transfer direction in an excitation process. Finally, different electron lifetimes observed in these dyes are explained by investigating the adsorption geometries and the relative orientations of iodine molecules in different "dyeI2" complexes.

Efficiency enhancement of black dye-sensitized solar cells by newly synthesized D-π-A coadsorbents: a theoretical study.

In this work, using the DFT and TDDFT, we have theoretically studied the electronic and optical properties of the two recently synthesized coadsorbents Y1 and Y2, which were aimed to enhance the efficiency of the black dye-sensitized solar cells. To determine the solvatochromic shifts, both the implicit and mixed implicit-explicit models have been used. The connection between the solvatochromic shifts and the changes in dipole moments in the excitation process is discussed. The difference in excitation charge transfer is utilized to explain the experimentally observed difference in Jsc for Y1 and Y2. Investigating the interactions of I2 molecules in the electrolyte solution with the coadsorbents showed that with Y1 the recombination loss was weakened through decreasing the I2 concentration near the TiO2 surface, whereas with Y2 it was increased. As a result, the higher values of both Jsc and Voc with the Y1 coadsorbent explain its experimentally observed higher efficiency. The present study sheds light on how to design and engineer newer coadsorbents or organic dyes for higher efficiencies.