RESUMEN
Marine sedimentary ancient DNA (sedaDNA) is increasingly used to study past ocean ecosystems, however, studies have been severely limited by the very low amounts of DNA preserved in the subseafloor, and the lack of bioinformatic tools to authenticate sedaDNA in metagenomic data. We applied a hybridisation capture 'baits' technique to target marine eukaryote sedaDNA (specifically, phyto- and zooplankton, 'Planktonbaits1'; and harmful algal bloom taxa, 'HABbaits1'), which resulted in up to 4- and 9-fold increases, respectively, in the relative abundance of eukaryotes compared to shotgun sequencing. We further used the bioinformatic tool 'HOPS' to authenticate the sedaDNA component, establishing a new proxy to assess sedaDNA authenticity, "% eukaryote sedaDNA damage", that is positively correlated with subseafloor depth. We used this proxy to report the first-ever DNA damage profiles from a marine phytoplankton species, the ubiquitous coccolithophore Emiliania huxleyi. Our approach opens new avenues for the detailed investigation of long-term change and evolution of marine eukaryotes over geological timescales.
Asunto(s)
Daño del ADN , ADN Antiguo/análisis , Fitoplancton/genética , Zooplancton/genética , Animales , Organismos Acuáticos/genética , Eucariontes/genética , Sedimentos Geológicos/análisis , Metagenoma , Hibridación de Ácido NucleicoRESUMEN
Paralytic shellfish toxin composition in the resting cysts of the dinoflagellate Alexandrium tamarense was investigated by means of high performance liquid chromatography. A comparison was made between cysts collected from ship ballast tank sediments, natural population of motile vegetative cells collected from the area where ballast water was taken, as well as cultured vegetative cells established from the cysts and the natural plankton bloom. Total toxin concentration of the cysts (595 fmole/cell) was six-fold higher than that of the natural population of vegetative cells. They contained the same ten toxic components but in different relative abundances. The higher proportion of 11-alpha-hydroxysulfate epimers in the cysts suggests that the biosynthesis of toxins is halted at an early stage in cyst formation.
