DNA damage induced in vivo by 7-methoxy-2-nitronaphtho[2,1-b]-furan (R7000) in the lacI gene of Escherichia coli.

DNA adducts that block replication, induced in vivo by the 5-nitrofuran derivative R7000 (7-methoxy-2-nitronaphtho[2, 1-b]-furan) were mapped, at nucleotide resolution, in a region of the lacI gene of Escherichia coli, using a reiterative primer extension assay [D. Chandrasekhar, B. Van Houten, High resolution mapping of UV-induced photoproducts in the Escherichia coli lacI gene: inefficient repair of the non-transcribed strand correlates with high mutation frequency, J. Mol. Biol., 1994, Vol. 238, pp. 319-332]. It was found that R7000 induced a broad spectrum of low frequency replication blocks rather than particular hot spots in a limited number of particular targets. Most of these replication blocks were observed at G nucleotides, and most of G nucleotides present in the DNA sequence, if not all, constituted a possible target for the chemical attack of the compound. In addition, a large part of replication blocks observed at A, C or T could also reflect a replication block at the 3' or 5' nucleotide flanking a guanosine-DNA adduct. Only a very small number of replication blocks could be observed at A, C or T nucleotides non-adjacent to a G. These results show that, guanosine-DNA adducts are the main DNA lesions that block replication induced by R7000 in E. coli and suggests a strong reactivity of the genotoxic species generated in vivo by R7000 with the G nucleotidic targets. From 26 R7000-induced mutations previously mapped in this region [E. Touati, E. Krin, P. Quillardet, M. Hofnung, 7-methoxy-2-nitronaphto[2,1-b]furan (R7000)-induced mutation spectrum in the lacI gene of Escherichia coli: influence of SOS mutagenesis, Carcinogenesis, 1996, Vol. 17, pp. 2543-2550.], 22 (85%) occurred at GC base pairs at which termination products were observed. The other mutagenic events involved AT base pairs adjacent to a G nucleotide forming a replication block. Thus all mutagenic events occurred at, or adjacent to, a G nucleotide forming a replication block. Although it could not be excluded that some mutagenic events are due to undetected DNA lesions that do not block replication, these results strongly suggest that guanosine-DNA adducts that block DNA replication are responsive for a large part of the mutagenic events generated by R7000. The powerful capacity of R7000 to form adducts at most of the guanosine residues in a DNA sequence may account for at least part of its very potent genotoxic properties.

Probing the structural role of an alpha beta loop of maltose-binding protein by mutagenesis: heat-shock induction by loop variants of the maltose-binding protein that form periplasmic inclusion bodies.

The maltose-binding protein (MBP) of Escherichia coli is the periplasmic receptor of the maltose transport system. Previous studies have identified amino acid substitutions in an alpha/beta loop of the structure of MBP that are critical for the in vivo folding. To probe genetically the structural role of this surface loop, we generated a library in which the corresponding codons 32 and 33 of malE were mutagenized. The maltose phenotype, which correlates with a biologically active structure of MBP in the periplasm, indicated a considerable variability in the loop residues compatible with a correct in vivo folding pathway of the protein. By the same genetic screens, we characterized loop-variant MBPs associated with a defective periplasmic folding pathway and aggregated into inclusion bodies. Heat-shock induction with production of misfolded loop variants was examined using both lon-lacZ and htrA-lacZ fusions. We found that the extent of formation of inclusion bodies in the periplasm of E. coli, from misfolded loop variant MBPs, correlated with the level of heat-shock response regulated by the alternate heat-shock sigma factor, sigma 24.