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1.
Int J Biol Macromol ; 169: 452-462, 2021 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-33358946

RESUMEN

Alginate and its derivatives are annually produced approximately 30,000 tons or more and are applied to various industries as they are natural polymers. The global market for alginate and its derivatives has been growing steadily. There is little research compared to other enzymes produced through biomass degradation or modification. An alginate lyase, MtAl138, from Microbulbifer thermotolerans DAU221 was cloned and identified in Escherichia coli BL21 (DE3). MtAl138 contains a highly conserved motif (R538TELR, Q607IH609, and YFKAGVY716NQ), which indicates that it belongs to the polysaccharide lyase family 7 (PL7). MtAl138, with a molecular weight of 77 kDa worked optimally at 45 °C and pH 7.4. MtAl138 showed twice as much activity as when there was no NaCl when there was between 100 and 600 mM NaCl. Moreover, its activity increased in organic solvents such as benzene, hexane, methanol, and toluene. Based on the thin layer chromatography analyses, MtAl38 is an endo-type enzyme that produces di-, tri-, or tetrasaccharides from polyG and polyM. This study provided that MtAl138 is an endoenzyme that showed outstanding enzymatic activity at concentrated salt solutions and organic solvents, which makes it a reasonably attractive enzyme for use in various industries.


Asunto(s)
Gammaproteobacteria/metabolismo , Polisacárido Liasas/aislamiento & purificación , Polisacárido Liasas/metabolismo , Alginatos/química , Alginatos/metabolismo , Proteínas Bacterianas/química , Cromatografía en Capa Delgada/métodos , Clonación Molecular/métodos , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Cinética , Peso Molecular , Oligosacáridos/metabolismo , Polisacárido Liasas/química , Solventes/metabolismo , Especificidad por Sustrato , Temperatura
2.
PeerJ ; 7: e7106, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31367479

RESUMEN

BACKGROUND: ß-Glucosidases have attracted considerable attention due to their important roles in various biotechnological processes such as cellulose degradation to make energy and hydrolysis of isoflavone. Microbulbifer thermotolerans (M. thermotolerans) is isolated from deep-sea sediment and has not been researched much yet. As a potential candidate for a variety of biotechnological industries, ß-glucosidases from the novel bacterial species should be researched extensively. METHODS: ß-Glucosidase, MtBgl85, from M. thermotolerans DAU221 was purified by His-tag affinity chromatography and confirmed by SDS-PAGE and zymogram. Its biochemical and physiological properties, such as effects of temperature, pH, metal ions, and organic solvents, substrate specificity, and isoflavone hydrolysis, were investigated. RESULTS: M. thermotolerans DAU221 showed ß-glucosidase activity in a marine broth plate containing 0.1% esculin and 0.25% ammonium iron (III) citrate. The ß-glucosidase gene, mtbgl85, was isolated from the whole genome sequence of M. thermotolerans DAU221. The ß-glucosidase gene was 2,319 bp and encoded 772 amino acids. The deduced amino acid sequence had a 43% identity with OaBGL84 from Olleya aquimaris and 35% and 32% identity with to CfBgl3A and CfBgl3C from Cellulomonas fimi among bacterial glycosyl hydrolase family 3, respectively. The optimal temperature of MtBgl85 was 50 °C and the optimum pH was 7.0. MtBgl85 activity was strongly reduced in the presence of Hg2+ and Cu2+ ions. As a result of measuring the activity at various concentrations of NaCl, it was confirmed that the activity was maintained up to the concentration of 1 M, but gradually decreased with increasing concentration. MtBgl85 showed higher enzyme stability at non-polar solvents (high Log Pow ) than polar solvents (low Log Pow ). The hydrolyzed products of isoflavone glycosides and arbutin were analyzed by HPLC.

3.
Biotechnol Biofuels ; 11: 303, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30455732

RESUMEN

BACKGROUND: The ability to use organic solvents in enzyme reactions offers a number of industrially useful advantages. However, most enzymes are almost completely inactive in the presence of organic solvents. Thus, organic solvent-tolerant enzymes have potential applications in industrial processes. RESULTS: A chitinase gene from Microbulbifer thermotolerans DAU221 (mtch509) was cloned and expressed in Escherichia coli BL21 (DE3). The molecular weight of the expressed MtCh509 protein was approximately 60 kDa, and it was purified by His-tag affinity chromatography. Enzymatic assays showed that the optimum temperature for MtCh509 chitinase activity was 55 °C, and the enzyme was stable for 2 h at up to 50 °C. The optimum pH for MtCh509 activity was in the sub-acidic range, at pH 4.6 and 5.0. The activity of MtCh509 was maintained in presence of 1 M salt, gradually decreasing at higher concentrations, with residual activity (20%) detected after incubation in 5 M salt. Some organic solvents (benzene, DMSO, hexane, isoamyl alcohol, isopropyl alcohol, and toluene; 10-20%, v/v) increased the reactivity of MtCh509 relative to the aqueous system. When using NAG3, as a substrate, MtCh509 produced NAG2 as the major product, as well as NAG4, demonstrating that MtCh509 has transglycosylation activity. The K m and V max values for MtCh509 using colloidal chitin as a substrate were 9.275 mg/mL and 20.4 U/mg, respectively. Thus, MtCh509 could be used in extreme industrial conditions. CONCLUSION: The results of the hydrolysate analysis and the observed increase in enzyme activity in the presence of organic solvents show that MtCh509 has industrially attractive advantages. This is the first report on an organic solvent-tolerant and transglycosylating chitinase from Microbulbifer species.

4.
Mar Genomics ; 35: 43-46, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28528769

RESUMEN

Cellulophaga lytica DAU203 (KACC 19187), isolated from the marine sediment in Korea, has a strong ability to degrade agar. The genome of C. lytica DAU203 contains a single chromosome that is 3,952,957bp in length, with 32.02% G+C contents. The genomic information predicted that the DAU203 has the potential to be utilized in various enzymatic industries.


Asunto(s)
Proteínas Bacterianas/genética , Flavobacteriaceae/enzimología , Flavobacteriaceae/genética , Genoma Bacteriano , Sedimentos Geológicos/microbiología , Glicósido Hidrolasas/genética , Proteínas Bacterianas/metabolismo , Glicósido Hidrolasas/metabolismo , Secuenciación Completa del Genoma
5.
J Biotechnol ; 229: 31-2, 2016 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-27157698

RESUMEN

Microbulbifer thermotolerans DAU221 was preliminary isolated from the marine sediment samples in the Republic of Korea. Here, we present the complete genome sequence of M. thermotolerans DAU221, which consisted of 3,938,396 base pairs with a GC content of 56.57%. This genomic information should help us find the industrially useful enzymes.


Asunto(s)
Proteínas y Péptidos de Choque por Frío/genética , Gammaproteobacteria/enzimología , Gammaproteobacteria/genética , Genoma Bacteriano/genética , Sedimentos Geológicos/microbiología , Frío , Gammaproteobacteria/fisiología , Análisis de Secuencia de ADN
6.
Appl Microbiol Biotechnol ; 99(9): 3901-11, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25381490

RESUMEN

A maltotriose-producing α-amylase, AmyA, from a newly isolated bacterial strain Microbulbifer thermotolerans DAU221 was purified and characterized in the heterologous host, Escherichia coli, using the pCold I vector. The amyA gene encoded a 761-residue protein composed of a 33 amino acid secretion signal peptide. The purified α-amylase with a molecular mass of 80 kDa, approximately, shared a sequence motif characteristic of the glycoside hydrolase family 13. The enzyme was optimally active, at 50 °C in sodium phosphate buffer (pH 6.0), by the traditional one factor-at-a-time method. But the optimal conditions of time, temperature, and pH for production of maltotriose from soluble starch were 1.76 h, 44.95 °C, and pH 6.35 by response surface methodology, respectively. Maltotriose, as the major enzyme reaction product, was analyzed by thin-layer chromatography (TLC) and high-performance liquid chromatography (HPLC). The enzyme was found to be inhibited by the addition of 10 mM Cu(2+), Fe(3+), Hg(2+), Zn(2+), and EDTA, but exhibited extreme stability toward hexane. The K m and V max values for the hydrolysis of soluble starch were 1.08 mg/mL and 1.736 mmol maltotriose/mg protein/min, respectively.


Asunto(s)
Gammaproteobacteria/enzimología , Almidón/metabolismo , Trisacáridos/metabolismo , alfa-Amilasas/metabolismo , Secuencias de Aminoácidos , Cationes Bivalentes/metabolismo , Cromatografía Líquida de Alta Presión , Cromatografía en Capa Delgada , Clonación Molecular , Ácido Edético/metabolismo , Inhibidores Enzimáticos/metabolismo , Estabilidad de Enzimas , Escherichia coli/genética , Escherichia coli/metabolismo , Gammaproteobacteria/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Hidrólisis , Cinética , Metales/metabolismo , Peso Molecular , Señales de Clasificación de Proteína , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Temperatura , alfa-Amilasas/química , alfa-Amilasas/genética
7.
J Microbiol Biotechnol ; 24(7): 925-35, 2014 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-24690636

RESUMEN

A cold-adapted carbohydrate esterase, CEST, belonging to the carbohydrate esterase family 6, was cloned from Microbulbifer thermotolerans DAU221. CEST was composed of 307 amino acids with the first 22 serving as a secretion signal peptide. The calculated molecular mass and isoelectric point of the mature enzyme were 31,244 Da and pH 5.89, respectively. The catalytic triad consisted of residues Ser37, Glu192, and His281 in the conserved regions: GQSNMXG, QGEX(D/N), and DXXH. The three-dimensional structure of CEST revealed that CEST belongs to the α/ß-class of protein consisted of a central six-stranded ß-sheet flanked by eight α-helices. The recombinant CEST was purified by His-tag affinity chromatography and the characterization showed its optimal temperature and pH were 15°C and 8.0, respectively. Specifically, CEST maintained up to 70% of its enzyme activity when preincubated at 50°C or 60°C for 6 h, and 89% of its enzyme activity when preincubated at 70°C for 1h . The results suggest CEST belongs to group 3 of the cold-adapted enzymes. The enzyme activity was increased by Na(+) and Mg(2+) ions but was strongly inhibited by Cu(+) and Hg(2+) ions, at all ion concentrations. Using p-nitrophenyl acetate as a substrate, the enzyme had a Km of 0.278 mM and a kcat of 1.9 s(-1). Site-directed mutagenesis indicated that the catalytic triad (Ser37, Glu192, and His281) and Asp278 were essential for the enzyme activity.


Asunto(s)
Alteromonadaceae/enzimología , Proteínas Bacterianas/química , Esterasas/química , Proteínas Recombinantes/química , Alteromonadaceae/genética , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Clonación Molecular , Esterasas/genética , Esterasas/aislamiento & purificación , Esterasas/metabolismo , Modelos Moleculares , Datos de Secuencia Molecular , Filogenia , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Alineación de Secuencia
8.
World J Microbiol Biotechnol ; 30(1): 213-23, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-23892562

RESUMEN

A ß-glucosidase gene bglX was cloned from Lactococcus sp. FSJ4 by the method of shotgun. The bglX open reading frame consisted of 1,437 bp, encoding 478 amino acids. SDS-PAGE showed a recombinant bglX monomer of 54 kDa. Substrate specificity study revealed that the enzyme exhibited multifunctional catalysis activity against pNPG, pNPX and pNPGal. This enzyme shows higher activity against aryl glycosides of xylose than those of glucose or galactose. The enzyme exhibited the maximal activity at 40 °C, and the optimal pH was 6.0 with pNPG and 6.5 with pNPX as the substrates. Molecular modeling and substrate docking showed that there should be one active center responsible for the mutifuntional activity in this enzyme, since the active site pocket was substantially wide to allow the entry of pNPG, pNPX and pNPGal, which elucidated the structure-function relationship in substrate specificities. Substrate docking results indicated that Glu180 and Glu377 were the essential catalytic residues of the enzyme. The CDOCKER_ENERGY values obtained by substrate docking indicated that the enzyme has higher activity against pNPX than those of pNPG and pNPGal. These observations are in conformity with the results obtained from experimental investigation. Therefore, such substrate specificity makes this ß-glucosidase of great interest for further study on physiological and catalytic reaction processes.


Asunto(s)
Lactococcus/enzimología , beta-Glucosidasa/metabolismo , Dominio Catalítico , Clonación Molecular , Análisis por Conglomerados , ADN Bacteriano/química , ADN Bacteriano/genética , Electroforesis en Gel de Poliacrilamida , Estabilidad de Enzimas , Glicósidos/metabolismo , Concentración de Iones de Hidrógeno , Lactococcus/genética , Modelos Moleculares , Simulación del Acoplamiento Molecular , Datos de Secuencia Molecular , Peso Molecular , Filogenia , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Especificidad por Sustrato , Temperatura , beta-Glucosidasa/química , beta-Glucosidasa/genética
9.
Protein J ; 32(7): 579-84, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24141566

RESUMEN

Paenibacillus xylanilyticus KJ-03 isolated from konjac field, showed ß-glucosidase activity on tryptic soy agar plate supplemented with 0.1 % esculin and 0.25 % ferric ammonium citrate. A genome library was constructed to obtain the ß-glucosidase gene and a recombinant clone, pGlc2-3 was selected. The 2,247 bp gene encoding KJ-03 ß-glucosidase consisted of 749 amino acids. The deduced amino acids of BglA were 61 % homologous with that of the ß-glucosidase from Bacillus cereus AH1272, which belongs to the glycoside hydrolase family 3. His-tagged ß-glucosidase was purified by using His-Trap column and characterized. KJ-03 ß-glucosidase was showed as a single band with about 82 kDa on SDS-PAGE. The purified enzyme has optimal activity at 20 °C and pH 7.0 using p-NPßG and 72 % of the maximal activity was still remaining at 10 °C. The ß-glucosidase has optimal activity at low temperatures indicating that it is a cold-active enzyme. The substrate specificity showed that the purified enzyme hydrolyzed aryl ß-glucoside substrates and isoflavones such as daidzin and genistin.


Asunto(s)
Proteínas Bacterianas/metabolismo , Isoflavonas/metabolismo , Paenibacillus/enzimología , Proteínas Recombinantes/metabolismo , beta-Glucosidasa/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Estabilidad de Enzimas , Cinética , Datos de Secuencia Molecular , Paenibacillus/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Alineación de Secuencia , Especificidad por Sustrato , beta-Glucosidasa/química , beta-Glucosidasa/genética
10.
Int J Biol Macromol ; 61: 465-70, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23973490

RESUMEN

We explored a method to examine the hydrolysis of isoflavone glycoside by immobilizing ß-glucosidase on chitosan-carbon beads in an aqueous-organic two-phase system. The chitosan-carbon beads were cross-linked with glutaraldehyde to immobilize ß-glucosidase from Exiguobacterium sp. DAU5. The optimal pH and temperature were 9.0 and 55 °C, respectively. Under the optimized conditions, crude and purified enzymes immobilized onto chitosan-carbon beads gave yields of 16.7% and 60%, respectively. The specific activities of immobilized crude and purified enzymes were 4.3 U/g and 6 U/g, respectively. The immobilized enzyme retained more than 80% of its maximum activity at pH 7.0-11.0, while temperature was more influential (80% activity after 40 °C for 1.5 h, but only 40% activity after 55 °C for 0.5 h, respectively. The immobilized enzyme was able to hydrolyze isoflavone glycoside in an aqueous-organic two-phase system, and the hydrolyzed products were enriched in the organic phase, making it easy to recover the products, i.e., genistein and daidein from the reaction system. These results suggest that immobilized ß-glucosidase may be applicable for the industrial-scale hydrolysis of isoflavone glycoside.


Asunto(s)
Carbono/química , Quitosano/química , Enzimas Inmovilizadas/química , Glicósidos/química , Isoflavonas/química , beta-Glucosidasa/química , Activación Enzimática , Estabilidad de Enzimas , Concentración de Iones de Hidrógeno , Hidrólisis , Glycine max/química , Temperatura
11.
J Microbiol Biotechnol ; 23(3): 397-404, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23462014

RESUMEN

Paenibacillus xylanilyticus KJ-03 was isolated from soil samples obtained from a field with Amorphophallus konjac plants. A gene encoding xylanase was isolated from KJ-03 and cloned using a fosmid library. The xynA gene encodes xylanase; it consists of 1,035 bp and encodes 345 amino acids. The amino acid sequence deduced from the P. xylanilyticus KJ-03 xylanase showed 81% and 69% identities with those deduced from the P. polymyxa E681 and Paenibacillus sp. HPL-001 xylanases, respectively. The xynA gene comprises a single domain, consisting of a catalytic domain of the glycosyl hydrolase (GH) 10 family. The xynA gene was expressed in Escherichia coli BL21 (trxB), and the recombinant xylanase was purified by Niaffinity chromatography. The purified xylanase showed optimum activity with birchwood xylan as a substrate at 40°C and pH 7.4. Treatment with Mg(2+) and Li(+) showed a slight decrease in XynA activity; however, treatment with 5 mM Cu(2+) completely inhibited its activity. The results of the thin layer chromatography analysis indicated that the major hydrolysis product was xylobiose and small amounts of xylose and xylotriose. XynA showed increased activity with oat spelt xylan and birchwood xylan, but showed only slight activity with locust bean gum.


Asunto(s)
Endo-1,4-beta Xilanasas/metabolismo , Paenibacillus/enzimología , Secuencia de Aminoácidos , Amorphophallus/crecimiento & desarrollo , Secuencia de Bases , Clonación Molecular , ADN Bacteriano/química , ADN Bacteriano/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Endo-1,4-beta Xilanasas/genética , Inhibidores Enzimáticos/análisis , Estabilidad de Enzimas , Escherichia coli/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Paenibacillus/clasificación , Paenibacillus/genética , Paenibacillus/aislamiento & purificación , ARN Ribosómico 16S/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Microbiología del Suelo , Temperatura , Xilanos/metabolismo
12.
Appl Biochem Biotechnol ; 169(6): 1870-83, 2013 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-23344941

RESUMEN

The enzyme from halophilic microorganisms often has unique properties such as organic-solvent-tolerance. In this study, a novel organic-solvent-tolerant α-amylase gene was cloned from the mild halophile Exiguobacterium sp. DAU5. The open reading frame (ORF) of the enzyme consisted of 1,545 bp and encoded 514 amino acids, the primary sequence revealed that it belongs to the glycoside hydrolase (GH) family 13. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) showed an AmyH monomer of 57 kDa. The enzyme exhibited maximal activity at 40 °C in pH 8.5 glycine-NaOH buffer, and the activity was strongly inhibited by Zn(2+), Cu(2+), and Fe(2+). The α-amylase AmyH exhibited high hydrolysis activity toward soluble starch, and the major hydrolysis products were maltose, maltotriose, and maltopentaose; the AmyH could not efficiently hydrolyze oligosaccharides smaller than maltoheptaose, nor could it act on the ß-1,4 or α-1,6 glucosidic bonds in xylan or pullulan, respectively. In addition, the α-amylase exhibited better tolerance to organic solvents, as it was stable in the presence of dimethylsulfoxide (DMSO), methanol, ethanol, and acetone. Base on all of these results, the enzyme could be useful for practical application in the bakery industry and in biotechnological processes that occur in the presence of organic solvents.


Asunto(s)
Bacillales/enzimología , Compuestos Orgánicos/farmacología , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Solventes/farmacología , alfa-Amilasas/genética , alfa-Amilasas/metabolismo , Bacillales/genética , Clonación Molecular , Estabilidad de Enzimas , Escherichia coli/genética , Expresión Génica , Concentración de Iones de Hidrógeno , Hidrólisis , Cinética , Metales/farmacología , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Solubilidad , Almidón/química , Almidón/metabolismo , Temperatura , alfa-Amilasas/química , alfa-Amilasas/aislamiento & purificación
13.
World J Microbiol Biotechnol ; 29(5): 865-73, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23264152

RESUMEN

The gene encoding the cyclodextrin glucanotransferase (CGTase, EC2.4.1.19) of Paenibacillus illinoisensis was isolated, cloned, sequenced and expressed in Escherichia coli. Sequence analysis showed that the mature enzyme (684 amino acids) was preceded by a signal peptide of 34-residues. The deduced amino acid sequence of the CGTase from P. illinoisensis ZY-08 exhibited highest identity (99 %) to the CGTase sequence from Bacillus licheniformis (P14014). The four consensus regions of carbohydrate converting domain and Ca(2+) binding domain could be identified in the sequence. The CGTase was purified by using cold expression vector, pCold I, and His-tag affinity chromatography. The molecular weight of the purified enzyme was about 74 kDa. The optimum temperature and pH of the enzyme were 40 °C and pH 7.4, respectively. The enzyme activity was increased by the addition of Ca(2+) and inhibited by Ba(2+), Cu(2+), and Hg(2+). The K m and V max values calculated were 0.48 mg/ml and 51.38 mg of ß-cyclodextrin/ml/min. The ZY-08 and recombinant readily converted soluble starch to ß-cyclodextrin but ZY-08 did not convert king oyster mushroom powder and enoki mushroom powder. However the recombinant CGTase converted king oyster mushroom powder and enoki mushroom powder to ß-cyclodextrin.


Asunto(s)
Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Clonación Molecular , Glucosiltransferasas/química , Glucosiltransferasas/genética , Paenibacillus/enzimología , beta-Ciclodextrinas/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/aislamiento & purificación , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Estabilidad de Enzimas , Glucosiltransferasas/aislamiento & purificación , Glucosiltransferasas/metabolismo , Concentración de Iones de Hidrógeno , Cinética , Datos de Secuencia Molecular , Paenibacillus/química , Paenibacillus/genética , Señales de Clasificación de Proteína , Alineación de Secuencia , Especificidad por Sustrato
14.
Protein J ; 31(3): 238-45, 2012 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-22350314

RESUMEN

The bacterial strain Paenibacillus xylanilyticus KJ-03 was isolated from a sample of soil used for cultivating Amorphophallus konjac. The cellulase gene, cel5A was cloned using fosmid library and expressed in Escherichia coli BL21 (trxB). The cel5A gene consists of a 1,743 bp open reading frame and encodes 581 amino acids of a protein. Cel5A contains N-terminal signal peptide, a catalytic domain of glycosyl hydrolase family 5, and DUF291 domain with unknown function. The recombinant cellulase was purified by Ni-affinity chromatography. The cellulase activity of Cel5A was detected in clear band with a molecular weight of 64 kDa by zymogram active staining. The maximum activity of the purified enzyme was displayed at a temperature of 40 °C and pH 6.0 when carboxymethyl cellulose was used as a substrate. It has 44% of its maximum activity at 70 °C and retained 66% of its original activity at 45 °C for 1 h. The purified cellulase hydrolyzed avicel, CMC, filter paper, xylan, and 4-methylumbelliferyl ß-D-cellobiose, but no activity was detected against p-nitrophenyl ß-D-glucoside. The end products of the hydrolysis of cellotetraose and cellopentaose by Cel5A were detected by thin layer chromatography, while enzyme did not hydrolyze cellobiose and cellotriose.


Asunto(s)
Celulasa/aislamiento & purificación , Celulasa/metabolismo , Paenibacillus/enzimología , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Celulasa/química , Celulasa/genética , Cromatografía de Afinidad , Cromatografía en Capa Delgada , Clonación Molecular , Escherichia coli/química , Escherichia coli/genética , Escherichia coli/metabolismo , Concentración de Iones de Hidrógeno , Hidrólisis , Paenibacillus/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Especificidad por Sustrato
15.
Enzyme Microb Technol ; 50(2): 151-7, 2012 Feb 10.
Artículo en Inglés | MEDLINE | ID: mdl-22226202

RESUMEN

The bacteria with hydrolysis activity to glucomannan were isolated from the rhizosphere of Amorphophallus konjac through enrichment cultivation. One strain with strong activity in degrading glucomannan was identified preliminarily as Paenibacillus azotofixans YUPP-5 according to the sequence analysis of 16S rDNA. This strain is able to hydrolyze many polysaccharide with ß-1,4 linkage, including glucomannan, galactomannan, xylan, carboxymethyl cellulose, and chitin. One hydrolytic enzyme band of approximately 70 kDa was examined from the supernatants of YUPP-5 by using zymogram with mixture polysaccharides as substrate. The encoding gene had an open reading frame of 2157 bp, which deduced cyclodextrin glycosyltransferase (CGTase), including 718 amino acids with a signal peptide in the N-terminal region. When the gene was expressed in Escherichia coli BL21, the recombinant CGTase exhibited strong activity in degrading polysaccharides with ß-1,4 linkage, and in forming cyclodextrin by using carboxymethyl cellulose as substrate. This CGTase exhibited some new functions. Finally, the hydrolytic oligosaccharides from galactomannan or glucomannan were detected by thin layer chromatography. Pentasaccharide, tetrasaccharide, trisaccharide, and disaccharide could be examined as reaction time went on.


Asunto(s)
Glucosiltransferasas/metabolismo , Paenibacillus/enzimología , Polisacáridos/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Biotecnología , Clonación Molecular , Medios de Cultivo , Ciclodextrinas/metabolismo , Estabilidad de Enzimas , Escherichia coli/genética , Escherichia coli/metabolismo , Glucosiltransferasas/química , Glucosiltransferasas/genética , Glucosiltransferasas/aislamiento & purificación , Hidrólisis , Mananos/química , Mananos/metabolismo , Datos de Secuencia Molecular , Paenibacillus/clasificación , Paenibacillus/genética , Paenibacillus/crecimiento & desarrollo , Polisacáridos/química , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Análisis de Secuencia de ADN , Especificidad por Sustrato
16.
Biochem Biophys Res Commun ; 413(1): 80-6, 2011 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-21871443

RESUMEN

The anticancer activity of salinomycin has evoked excitement due to its recent identification as a selective inhibitor of breast cancer stem cells (CSCs) and its ability to reduce tumor growth and metastasis in vivo. In prostate cancer, similar to other cancer types, CSCs and/or progenitor cancer cells are believed to drive tumor recurrence and tumor growth. Thus salinomycin can potentially interfere with the end-stage progression of hormone-indifferent and chemotherapy-resistant prostate cancer. Androgen-responsive (LNCaP) and androgen-refractive (PC-3, DU-145) human prostate cancer cells showed dose- and time-dependent reduced viability upon salinomycin treatment; non-malignant RWPE-1 prostate cells were relatively less sensitive to drug-induced lethality. Salinomycin triggered apoptosis of PC-3 cells by elevating the intracellular ROS level, which was accompanied by decreased mitochondrial membrane potential, translocation of Bax protein to mitochondria, cytochrome c release to the cytoplasm, activation of the caspase-3 and cleavage of PARP-1, a caspase-3 substrate. Expression of the survival protein Bcl-2 declined. Pretreatment of PC-3 cells with the antioxidant N-acetylcysteine prevented escalation of oxidative stress, dissipation of the membrane polarity of mitochondria and changes in downstream molecular events. These results are the first to link elevated oxidative stress and mitochondrial membrane depolarization to salinomycin-mediated apoptosis of prostate cancer cells.


Asunto(s)
Antineoplásicos/farmacología , Apoptosis/efectos de los fármacos , Potencial de la Membrana Mitocondrial/efectos de los fármacos , Neoplasias de la Próstata/metabolismo , Piranos/farmacología , Especies Reactivas de Oxígeno/metabolismo , Caspasa 3/metabolismo , Línea Celular Tumoral , Supervivencia Celular , Citocromos c/metabolismo , Citosol/metabolismo , Humanos , Masculino , Mitocondrias/metabolismo , Poli(ADP-Ribosa) Polimerasa-1 , Poli(ADP-Ribosa) Polimerasas/metabolismo , Transporte de Proteínas , Proteínas Proto-Oncogénicas c-bcl-2/metabolismo , Proteína X Asociada a bcl-2/metabolismo
17.
Indian J Biochem Biophys ; 47(4): 203-10, 2010 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-21174947

RESUMEN

A gene encoding a beta-1,3-1,4-glucanase (CelA) belonging to family 5 of glycoside hydrolases was cloned and sequenced from the Bacillus subtilis A8-8. The open-reading-frame of celA comprised 1499 base pairs and the enzyme was composed of 500 amino acids with a molecular mass of 55 kDa. The recombinant beta-1,3-1,4 glucanase was purified by GST-fusion purification system. The pH and temperature optima of the enzyme were 8.0 and 60 degrees C, respectively. The enzyme was stable within pH 6.0-9.0. It was stable up to 60 degrees C and retained 30% of its original activity at 70 degrees C for 60 min. It hydrolyzed lichenan, CMC, xylan, laminarin, avicel and pNPC, but was inactive towards cellobiose. The enzyme activity was markedly activated by Co2+ and Mn2+, but was strongly inactivated by Fe3+. The truncated gene, devoid of cellulose-binding domain (CBD) showed 60% of activity and bound to avicel.


Asunto(s)
Bacillus subtilis/enzimología , Bacillus subtilis/genética , Endo-1,3(4)-beta-Glucanasa/química , Dominio Catalítico , Celulosa/química , Clonación Molecular , Cobalto/química , Glucanos/química , Concentración de Iones de Hidrógeno , Hidrólisis , Manganeso/química , Polisacáridos/química , Proteínas Recombinantes/química , Temperatura , Xilanos/química
18.
Electron. j. biotechnol ; 12(3): 5-6, July 2009. ilus, tab
Artículo en Inglés | LILACS | ID: lil-551883

RESUMEN

We cloned 2-keto-3-deoxy-gluconate kinase (KDGK), which catalyzes the phosphorylation of 2-keto-3-deoxygluconate (KDG) to 2-keto-3-deoxy-6-phophogluconate (KDPG) from Serratia marcescens KCTC 2172. The nucleotide sequence revealed a single open reading frame containing 1,208 bp and encoding for 309 amino acids, with a molecular weight of 33,993 Da. The enzyme was purified via GST affinity chromatography. The putative KdgT binding site was detected upstream of the initial codon. The KDG kinase utilized 2-ketogluconate (KG) and KDG as substrates. The optimal temperature and pH for KDGK activity were 50ºC and 8.0, respectively.


Asunto(s)
Gluconatos/metabolismo , Serratia marcescens/genética , Serratia marcescens/metabolismo , Gelatinasas/biosíntesis , Glutatión Transferasa/biosíntesis , Glutatión Transferasa/metabolismo , Lipasa/biosíntesis , Maltosa/metabolismo
19.
J Microbiol Biotechnol ; 19(2): 128-35, 2009 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-19307760

RESUMEN

Acinetobacter baumannii BD5 was isolated from waters of Baek-du mountain, and the lipase gene was cloned using a PCR technique. The deduced amino acid sequence of the lipase and lipase chaperone were found to encode proteins of 325 aa and 344 aa with a molecular mass of 35 kDa and 37 kDa, respectively. The lipase gene was cloned and expressed in Escherichia coli BL21 (trxB) as an inclusion body, which was subsequently solubilized by urea, and then purified using Ni-affinity chromatography. After being purified, the lipase was refolded by incubation at 4oC in the presence of a 1:10 molar ratio of lipase:chaperone. The maximal activity of the refolded lipase was observed at a temperature of 35 degrees and pH 8.3 when p-NP caprate (C10) was used as a substrate; however, 28% of the activity observed at 35 degrees was still remaining at 0 degrees . The stability of the purified enzyme at low temperatures indicates that it is a cold-adapted enzyme. The refolded lipase was activated by Ca2+, Mg2+, and Mn2+, whereas Zn2+ and Cu2+ inhibited it. Additionally, 0.1% Tween 20 increased the lipase activity by 33%, but SDS and Triton X-100 inhibited the lipase activity by 40% and 70%, respectively.


Asunto(s)
Acinetobacter baumannii/genética , Proteínas Bacterianas/metabolismo , Frío , Lipasa/metabolismo , Acinetobacter baumannii/enzimología , Secuencia de Aminoácidos , Proteínas Bacterianas/genética , Clonación Molecular , ADN Bacteriano/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Lipasa/genética , Datos de Secuencia Molecular , ARN Ribosómico 16S/genética , Alineación de Secuencia , Análisis de Secuencia de ADN
20.
Appl Microbiol Biotechnol ; 80(4): 563-72, 2008 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18654770

RESUMEN

Bacillus thuringiensis is well known as an effective bio-insecticidal bacterium. However, the roles of B. thuringiensis to control plant diseases are not paid great attention to. In recent years, many new functions in protecting plants from pathogen infection have been discovered. For example, acyl homoserine lactone lactonase produced by B. thuringiensis can open the lactone ring of N-acyl homoserine lactone, a signal molecule in the bacterial quorum-sensing system. This in turn, significantly silences bacterial virulence. This finding resulted in the development of a new strategy against plant bacterial diseases by quenching bacterial quorum sensing. Another new discovery about B. thuringiensis function is zwittermicin A, a linear aminopolyol antibiotic with high activity against the Oomycetes and their relatives, as well as some gram-negative bacteria. This paper summarized the relative progresses of B. thuringiensis in plant disease control and its favorable application prospects.


Asunto(s)
Bacillus thuringiensis/metabolismo , Enfermedades de las Plantas/microbiología , Bacillus thuringiensis/enzimología , Bacillus thuringiensis/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Vías Biosintéticas , Hidrolasas de Éster Carboxílico/genética , Hidrolasas de Éster Carboxílico/metabolismo , Lactonas/metabolismo , Péptidos/genética , Péptidos/metabolismo , Percepción de Quorum
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