Improving breeding efficiency in potato using molecular and quantitative genetics.

KEY MESSAGE: Potatoes are highly heterozygous and the conventional breeding of superior germplasm is challenging, but use of a combination of MAS and EBVs can accelerate genetic gain. Cultivated potatoes are highly heterozygous due to their outbreeding nature, and suffer acute inbreeding depression. Modern potato cultivars also exhibit tetrasomic inheritance. Due to this genetic heterogeneity, the large number of target traits and the specific requirements of commercial cultivars, potato breeding is challenging. A conventional breeding strategy applies phenotypic recurrent selection over a number of generations, a process which can take over 10 years. Recently, major advances in genetics and molecular biology have provided breeders with molecular tools to accelerate gains for some traits. Marker-assisted selection (MAS) can be effectively used for the identification of major genes and quantitative trait loci that exhibit large effects. There are also a number of complex traits of interest, such as yield, that are influenced by a large number of genes of individual small effect where MAS will be difficult to deploy. Progeny testing and the use of pedigree in the analysis can provide effective identification of the superior genetic factors that underpin these complex traits. Recently, it has been shown that estimated breeding values (EBVs) can be developed for complex potato traits. Using a combination of MAS and EBVs for simple and complex traits can lead to a significant reduction in the length of the breeding cycle for the identification of superior germplasm.

Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth.

KEY MESSAGE: Generation of a dense SNP-based linkage map of a diploid potato population and identification of major QTLs for tuber shape and eye depth on chromosomes 2 and 10. This paper reports the construction of a genetic map of a highly heterozygous full-sib diploid potato population (06H1) based on the use of a set of 8,303 single nucleotide polymorphism (SNP) markers. The map contains 1,355 distinct loci and 2,157 SNPs, 802 of which co-segregate with other markers. We find high levels of collinearity between the 12 chromosomal maps with a recently improved version of the potato genome assembly, with the expected genetic clustering in centromeric regions. The linkage maps are used in combination with highly detailed phenotypic assessments conducted over two growing seasons to perform quantitative trait loci analysis of two important potato traits, tuber shape and eye depth. The major loci segregating for tuber shape in 06H1 map to loci on chromosomes 2 and 10, with smaller effects mapping to three other chromosomes. A major locus for tuber eye depth co-locates with the tuber shape locus on chromosome 10. To assess when tuber shape is established in the developing tuber, we have performed staged observations of tuber formation. Our observations suggest that tuber shape is determined very early in tuber development.

Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers.

The total carotenoid content was determined of tubers from 38 Solanum phureja lines grown in field plots over 3 years. The results indicated a significant difference between years, but the ranking was similar from year to year and the interaction between season and variety was small. Postharvest storage significantly reduced the carotenoid content of the tubers, and reducing the storage temperature further lowered the carotenoid content. Examination of the individual carotenoids revealed that lutein was the most stable and least likely to be reduced, while the levels of the carotenoids derived from beta-carotene were significantly reduced during storage at either temperature. Exposure of the tubers to either mercury or sodium lights resulted in a significant increase in total carotenoid content, concomitant with elevated chlorophyll. Although both types of radiation produced a broadly similar increase in total carotenoid contents, differential effects on the individual carotenoid profile of the light-induced carotenoids were observed.

Progress in improving processing attributes in potato.

The recent publication of a molecular-function map of carbohydrate metabolism and transport in potato enables a candidate-gene approach to be used to solve the problem of cold-sweetening, signifying a significant step in our understanding of this economically important trait. With confirmation of the role that many important enzymes play in starch metabolism and their position on a detailed linkage map, we should now be able to make progress in manipulating this trait, either through conventional means such as marker-assisted selection or through transgenic approaches.

Effects of genotype, environment, and postharvest storage on the total ascorbate content of potato (Solanum tuberosum) tubers.

The total ascorbate content of potato tubers from 33 Solanum tuberosum genotypes grown at three geographically diverse sites in Europe in each of two years was determined immediately postharvest and after approximately 4 months of storage at 4 degrees C. Statistically significant differences in total ascorbate concentration were observed between genotypes both at harvest and after storage. In all genotypes, the levels of ascorbate decreased during storage. These results are discussed in terms of their implications for diet and health as well as in terms of breeding for improved vitamin C content in potatoes.