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1.
Microbiol Spectr ; 12(10): e0343223, 2024 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-39264196

RESUMEN

Human parainfluenza viruses (HPIVs) are a significant cause of acute lower respiratory tract infections (ALRTIs) among young children and elderly individuals worldwide. The four types of HPIVs (HPIV1-4) can cause recurrent infections and pose a significant economic burden on health care systems globally. However, owing to the limited availability of complete genome sequences, the genetic evolution of these viruses and the development of vaccines and antiviral treatments are hampered. To address this issue, this study utilized next-generation sequencing to obtain 156 complete genome sequences of HPIV1-4, which were isolated from hospitalized children with ALRTIs in six regions of China between 2015 and 2021. This study revealed multiple clades, lineages, or sublineages of HPIVs circulating in mainland China, with a novel clade D of HPIV1 identified as geographically restricted to China. Moreover, this study identified the endemic dominant genotype of HPIV3, lineage C3, which has widely spread and continuously circulated in China. Bioinformatic analysis of the genome sequences revealed that the proteins of HPIV3 possessed the most variable sites, with the P protein showing more diversity than the other proteins among all types of HPIVs. The HN proteins of HPIV1-3 are all under negative/purifying selection, and two amino acid substitutions in the HN proteins correspond to known mAb neutralizing sites in the two HPIV3 strains. These findings provide crucial insights into the genetic diversity and evolutionary dynamics of HPIVs circulating among children in China and may facilitate research on the molecular diagnosis, vaccine development, and surveillance of HPIVs.IMPORTANCEPhylogenetic analysis revealed the prevalence of multiple clades, lineages, or sublineages of human parainfluenza viruses (HPIVs) circulating in mainland China. Notably, a unique evolutionary branch of HPIV1 containing only Chinese strains was identified and designated clade D. Furthermore, in 2023, HPIV3 strains from Pakistan and Russia formed a new lineage within clade C, named C6. The first HPIV4b sequence obtained in this study from China belongs to lineage C2. Evolutionary rate assessments revealed that both the HN and whole-genome sequences of HPIV3 presented the lowest evolutionary rates compared with those of the other HPIV types, with rates of 6.98E-04 substitutions/site/year (95% HPD: 5.87E-04 to 8.25E-03) and 5.85E-04 substitutions/site/year (95% HPD: 5.12E-04 to 6.62E-04), respectively. Recombination analysis revealed a potential recombination event in the F gene of an HPIV1 strain in this study. Additionally, all the newly obtained HPIV1-3 strains exhibited negative selection pressure, and two mutations were identified in the HN protein of two HPIV3 strains at monoclonal antibody-binding sites.


Asunto(s)
Genoma Viral , Genotipo , Filogenia , Infecciones del Sistema Respiratorio , Humanos , China/epidemiología , Infecciones del Sistema Respiratorio/virología , Infecciones del Sistema Respiratorio/epidemiología , Preescolar , Genoma Viral/genética , Niño , Masculino , Femenino , Lactante , Virus de la Parainfluenza 1 Humana/genética , Virus de la Parainfluenza 1 Humana/aislamiento & purificación , Virus de la Parainfluenza 1 Humana/clasificación , Virus de la Parainfluenza 4 Humana/genética , Virus de la Parainfluenza 4 Humana/clasificación , Virus de la Parainfluenza 4 Humana/aislamiento & purificación , Virus de la Parainfluenza 3 Humana/genética , Virus de la Parainfluenza 3 Humana/clasificación , Virus de la Parainfluenza 3 Humana/aislamiento & purificación , Secuenciación de Nucleótidos de Alto Rendimiento , Secuenciación Completa del Genoma , Variación Genética , Infecciones por Respirovirus/virología , Infecciones por Respirovirus/epidemiología , Respirovirus/genética , Respirovirus/clasificación , Respirovirus/aislamiento & purificación , Virus de la Parainfluenza 2 Humana/genética , Virus de la Parainfluenza 2 Humana/clasificación , Virus de la Parainfluenza 2 Humana/aislamiento & purificación , Pueblos del Este de Asia
2.
Environ Pollut ; 362: 124979, 2024 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-39293658

RESUMEN

Bioremediation, an economical and environmentally friendly approach, provides a sustainable solution for mitigating heavy metal contamination in soils. This study identifies four fungal strains-Trichoderma harzianum DAA8, Trichoderma reesei DAA9, Rhizomucor variabilis DFB3, and Trichoderma asperellum LDA4-that exhibit tolerance to cadmium (Cd) and chromium (Cr). These strains were isolated from soils impacted by heavy metal contamination in mining regions. Rigorous examinations of these strains led us to determine their Minimum Inhibitory Concentrations (MICs) and optimal absorption-reduction conditions. Our microscopic data and GC-MS analysis indicate that these strains can accumulate Cd and Cr by generating compounds, such as ketones and imines, in heavy metal environments. We evaluated the remediation efficacy of both single and co-cultures of Rhizomucor variabilis DFB3 and Trichoderma asperellum LDA4 in conjunction with king grass, a plant known for its heavy metal accumulation capabilities. Our findings indicated an impressive 41.9% increase in plant biomass and 47.2% and 64.4% increase in Cd and Cr accumulation respectively. The removal rates of Cd and Cr were 16.5% and 19.0%, respectively, following the co-inoculation of Rhizomucor variabilis DFB3 and Trichoderma asperellum LDA4. These rates represent increases of 37.1% and 33.7% compared to the removal rates achieved with king grass alone. This study not only advances strategies to manage Cd-Cr contamination but also sets a pathway for efficient heavy metal soil remediation using a microbial-plant combined technique.

3.
BMC Infect Dis ; 24(1): 936, 2024 Sep 09.
Artículo en Inglés | MEDLINE | ID: mdl-39251906

RESUMEN

BACKGROUND: Human adenovirus (HAdV) is an important pathogen causing acute respiratory infection (ARI) in children. Many countries, including China, have experienced sporadic or outbreaks related to HAdV-4, and death cases were reported. However, there is little research on HAdV-4 and the epidemic situation of HAdV-4 in China is little known. This study was designed to comprehend the prevalence and genetic characteristics of HAdV-4 in ARI children in China. METHODS: Respiratory tract samples from ARI children hospitalized in six hospitals of Northern and Southern China from 2017 to 2020 were collected for HAdV detection and typing. Clinical information was collected from HAdV-4 positive patients for clinical characteristics and epidemiological analysis. The main capsid proteins and the whole genome sequences were amplified and sequenced for bioinformatics analysis. RESULTS: There were 2847 ARI children enrolled, and 156 (5.48%) HAdV positive samples were detected. Eleven HAdV-4 positive samples were identified, accounting for 0.39% of the total samples and 7.05% of the HAdV positive samples. The main manifestations were fever and cough. Two children had conjunctivitis. Two children were diagnosed with severe pneumonia and developed respiratory failure. One of them developed hemophagocytic syndrome and checked in pediatric intensive care unit (PICU). This child had ventricular septal defect. All the children recovered. The isolated strains of HAdV-4 obtained in this study and the reference strains from China located in the same phylogenetic branch (HAdV-4a), while the prototype strain and vaccine strains formed another branch (HAdV-4p). Upon comparison with the prototype strain, there were a few amino acid mutations existing in three major capsid proteins. According to recombination analysis, no new recombination was found. CONCLUSIONS: The detection rate of HAdV-4 in children hospitalized with ARI was 0.39% in the total samples and 7.05% of all HAdV positive samples. HAdV-4 isolates obtained in this study and other reference strains from China belonged to the HAdV-4a subtype. Our data provided reference for the monitoring, prevention and control of HAdV-4, as well as the research and development of vaccines and drugs.


Asunto(s)
Infecciones por Adenovirus Humanos , Adenovirus Humanos , Filogenia , Infecciones del Sistema Respiratorio , Humanos , China/epidemiología , Adenovirus Humanos/genética , Adenovirus Humanos/aislamiento & purificación , Adenovirus Humanos/clasificación , Infecciones del Sistema Respiratorio/virología , Infecciones del Sistema Respiratorio/epidemiología , Infecciones por Adenovirus Humanos/epidemiología , Infecciones por Adenovirus Humanos/virología , Masculino , Preescolar , Femenino , Estudios Prospectivos , Lactante , Niño , Proteínas de la Cápside/genética , Prevalencia
4.
Front Immunol ; 15: 1294898, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38660301

RESUMEN

Human adenovirus type 7 (HAdV-7) is a significant viral pathogen that causes respiratory infections in children. Currently, there are no specific antiviral drugs or vaccines for children targeting HAdV-7, and the mechanisms of its pathogenesis remain unclear. The NLRP3 inflammasome-driven inflammatory cascade plays a crucial role in the host's antiviral immunity. Our previous study demonstrated that HAdV-7 infection activates the NLRP3 inflammasome. Building upon this finding, our current study has identified the L4 100 kDa protein encoded by HAdV-7 as the primary viral component responsible for NLRP3 inflammasome activation. By utilizing techniques such as co-immunoprecipitation, we have confirmed that the 100 kDa protein interacts with the NLRP3 protein and facilitates the assembly of the NLRP3 inflammasome by binding specifically to the NACHT and LRR domains of NLRP3. These insights offer a deeper understanding of HAdV-7 pathogenesis and contribute to the development of novel antiviral therapies.


Asunto(s)
Infecciones por Adenovirus Humanos , Adenovirus Humanos , Inflamasomas , Proteína con Dominio Pirina 3 de la Familia NLR , Proteínas no Estructurales Virales , Humanos , Infecciones por Adenovirus Humanos/inmunología , Infecciones por Adenovirus Humanos/metabolismo , Infecciones por Adenovirus Humanos/virología , Adenovirus Humanos/inmunología , Adenovirus Humanos/fisiología , Células HEK293 , Inflamasomas/metabolismo , Inflamasomas/inmunología , Proteína con Dominio Pirina 3 de la Familia NLR/metabolismo , Proteína con Dominio Pirina 3 de la Familia NLR/inmunología , Unión Proteica , Proteínas Virales/metabolismo , Proteínas Virales/inmunología , Proteínas no Estructurales Virales/inmunología , Proteínas no Estructurales Virales/metabolismo
5.
Appl Microbiol Biotechnol ; 108(1): 255, 2024 Mar 06.
Artículo en Inglés | MEDLINE | ID: mdl-38446219

RESUMEN

Monascus spp. are commercially important fungi due to their ability to produce beneficial secondary metabolites such as the cholesterol-lowering agent lovastatin and natural food colorants azaphilone pigments. Although hyphal branching intensively influenced the production of these secondary metabolites, the pivotal regulators of hyphal development in Monascus spp. remain unclear. To identify these important regulators, we developed an artificial intelligence (AI)-assisted image analysis tool for quantification of hyphae-branching and constructed a random T-DNA insertion library. High-throughput screening revealed that a STE kinase, MpSTE1, was considered as a key regulator of hyphal branching based on the hyphal phenotype. To further validate the role of MpSTE1, we generated an mpSTE1 gene knockout mutant, a complemented mutant, and an overexpression mutant (OE::mpSTE1). Microscopic observations revealed that overexpression of mpSTE1 led to a 63% increase in branch number while deletion of mpSTE1 reduced the hyphal branching by 68% compared to the wild-type strain. In flask cultures, the strain OE::mpSTE1 showed accelerated growth and glucose consumption. More importantly, the strain OE::mpSTE1 produced 9.2 mg/L lovastatin and 17.0 mg/L azaphilone pigments, respectively, 47.0% and 30.1% higher than those of the wild-type strain. Phosphoproteomic analysis revealed that MpSTE1 directly phosphorylated 7 downstream signal proteins involved in cell division, cytoskeletal organization, and signal transduction. To our best knowledge, MpSTE1 is reported as the first characterized regulator for tightly regulating the hyphal branching in Monascus spp. These findings significantly expanded current understanding of the signaling pathway governing the hyphal branching and development in Monascus spp. Furthermore, MpSTE1 and its analogs were demonstrated as promising targets for improving production of valuable secondary metabolites. KEY POINTS: • MpSTE1 is the first characterized regulator for tightly regulating hyphal branching • Overexpression of mpSTE1 significantly improves secondary metabolite production • A high-throughput image analysis tool was developed for counting hyphal branching.


Asunto(s)
Hifa , Monascus , Monascus/genética , Inteligencia Artificial , Proteínas Serina-Treonina Quinasas , Lovastatina , Treonina , Serina
6.
Chemosphere ; 352: 141293, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38280645

RESUMEN

Heavy metals pollution in soils is an urgent environmental issue worldwide. Phytoremediation is a green and eco-friendly way of remediating heavy metals. However, a systematic overview of this field is limited, and little is known about future development trends. Therefore, we used CiteSpace software to conduct bibliometric and visual analyses of published literature in the field of phytoremediation of heavy metals in soils from the Web of Science core collection and identified research hotspots and development trends in this field. Researchers are paying increased attention to phytoremediation of heavy metals in soils, especially environmental researchers. A total of 121 countries or regions, 3790 institutions, 4091 funded organisations and 15,482 authors have participated in research in this area. China, India, and Pakistan are the largest contributors. There has been extensive cooperation between countries, institutions, and authors worldwide, but there is a lack of cooperation among top authors. 'Calcareous soil', 'Co-contaminated soil' and 'Metal availability' are the most intensively investigated topics. 'EDTA', 'Plant growth-promoting Rhizobacteria', 'Photosynthesis', 'Biochar' and 'Phytoextraction' are research hotspots in this field. In addition, more and more researchers are beginning to pay attention to research on co-contaminated soil, metal availability, chelating agents, and microbial-assisted phytoremediation. In summary, bibliometric, and visual analyses in the field of phytoremediation of heavy metals in soils identifies probable directions for future research and provides a resource through which to better understand this rapidly advancing subject.


Asunto(s)
Metales Pesados , Contaminantes del Suelo , Biodegradación Ambiental , Contaminantes del Suelo/análisis , Bibliometría , Suelo
7.
J Agric Food Chem ; 72(2): 1114-1123, 2024 Jan 17.
Artículo en Inglés | MEDLINE | ID: mdl-38166364

RESUMEN

Natural products are a rich resource for the discovery of innovative drugs. Microbial cocultivation enables discovery of novel natural products through tandem enzymatic catalysis between different fungi. In this study, Monascus purpureus, as a food fermentation strain capable of producing abundant natural products, was chosen as an example of a cocultivation pair strain. Cocultivation screening revealed that M. purpureus and Aspergillus oryzae led to the production of two novel cyclohexyl-furans, Monaspins A and B. Optimization of the cocultivation mode and media enhanced the production of Monaspins A and B to 1.2 and 0.8 mg/L, respectively. Monaspins A and B were structurally elucidated by HR-ESI-MS and NMR. Furthermore, Monaspin B displayed potent antiproliferative activity against the leukemic HL-60 cell line by inducing apoptosis, with a half-maximal inhibitory concentration (IC50) of 160 nM. Moreover, in a mouse leukemia model, Monaspin B exhibited a promising in vivo antileukemic effect by reducing white blood cell, lymphocyte, and neutrophil counts. Collectively, these results indicate that Monaspin B is a promising candidate agent for leukemia therapy.


Asunto(s)
Aspergillus oryzae , Productos Biológicos , Leucemia , Monascus , Animales , Ratones , Monascus/metabolismo , Aspergillus oryzae/metabolismo , Técnicas de Cocultivo , Fermentación , Furanos/metabolismo , Productos Biológicos/metabolismo , Leucemia/tratamiento farmacológico , Pigmentos Biológicos/metabolismo
8.
J Hazard Mater ; 465: 133266, 2024 03 05.
Artículo en Inglés | MEDLINE | ID: mdl-38118201

RESUMEN

The negative impacts of soil heavy metals composite pollution on agricultural production and human health are becoming increasingly prevalent. The applications of green chelating agents and microorganisms have emerged as promising alternate methods for enhancing phytoremediation. The regulatory effects of root secretion composition, microbial carbon source utilization, key gene expression, and soil microbial community structure were comprehensively analyzed through a combination of HPLC, Biolog EcoPlates, qPCR, and high-throughput screening techniques. The application of EDDS resulted in a favorable rhizosphere ecological environment for the king grass Piriformospora indica, characterized by a decrease in soil pH by 0.41 units, stimulation of succinic acid and fumaric acid secretion, and an increase in carbon source metabolic activity of amino acids and carbohydrates. Consequently, this improvement enhanced the bioavailability of Cd/Cr and increased the biomass of king grass by 25.7%. The expression of dissimilatory iron-reducing bacteria was significantly upregulated by 99.2%, while there was no significant difference in Clostridium abundance. Furthermore, the richness of the soil rhizosphere fungal community (Ascomycota: 45.8%, Rozellomycota: 16.7%) significantly increased to regulate the proportion of tolerant microbial dominant groups, promoting the improvement of Cd/Cr removal efficiency (Cd: 23.4%, Cr: 18.7%). These findings provide a theoretical basis for the sustainable development of chelating agent-assisted plants-microorganisms combined remediation of heavy metals in soil.


Asunto(s)
Basidiomycota , Metales Pesados , Contaminantes del Suelo , Humanos , Cadmio/metabolismo , Suelo/química , Poaceae/metabolismo , Rizosfera , Contaminantes del Suelo/metabolismo , Metales Pesados/análisis , Microbiología del Suelo , Quelantes , Carbono , Biodegradación Ambiental
9.
Virol Sin ; 38(5): 709-722, 2023 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-37549881

RESUMEN

Human adenovirus B7 (HAdV-B7) causes severe acute lower respiratory tract infections in children. However, neither the child-specific antivirals or vaccines are available, nor the pathogenesis is clear. Autophagy, as part of innate immunity, plays an important role in resistance to viral infection by degrading the virus and promoting the development of innate and adaptive immunity. This study provided evidence that HAdV-B7 infection induced complete autophagic flux, and the pharmacological induction of autophagy decreased HAdV-B7 replication. In this process, the host protein Bcl2-associated athanogene 3 (BAG3) mediated autophagy to inhibit the replication of HAdV-B7 by binding to the PPSY structural domain of viral protein pVI through its WW structural domain. These findings further our understanding of the host immune response during viral infection and will help to develop broad anti-HAdV therapies.


Asunto(s)
Infecciones por Adenovirus Humanos , Adenovirus Humanos , Humanos , Replicación Viral , Proteínas Virales , Factores de Transcripción , Proteínas Adaptadoras Transductoras de Señales , Proteínas Reguladoras de la Apoptosis
10.
Arch Virol ; 168(8): 206, 2023 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-37453955

RESUMEN

Acute flaccid paralysis (AFP) associated with enterovirus D68 (EV-D68) infection has attracted much attention since an outbreak in the USA in 2014. Notably, EV-D68 was detected in a child with AFP for the first time in China in 2018. In a multicentre study from May 2017 to December 2019, we monitored EV-D68 infections in hospitalized children with acute lower respiratory tract infection (ALRTI) in China. Out of 3,071 samples collected from patients with ALRTI, ten were positive for EV-D68. All patients presented with mild diseases with no neurological symptoms or signs. Phylogenetic analysis based on the VP1 gene showed that all EV-D68 sequences obtained in this study belonged to subclade B3 and were close to sequences of EV-D68 strains obtained from patients with AFP in the USA. Four EV-D68 strains were isolated, and their complete genome sequences were determined. These sequences did not show any evidence of recombination events. To assess their neurotropism, the isolates were used to infect the "neuronal-like" cell line SH-SY5Y, and resulted in a cytopathic effect. We further analysed the structure and sites that may be associated with neurovirulence, including the stem-loop structure in the untranslated region (3'UTR) and identified amino acid substitutions (M291T, V341A, T860N, D927N, S1108G, and R2005K) in the coding region and specific nucleotides (127T, 262C, and 339T) in the 5' UTR. In conclusion, EV-D68 infection was detected in a small number of children with ALRTI in China from 2017 to 2019. Disease symptoms in these children were relatively mild with no neurological complications, and all EV-D68 sequences belonged to subclade B3.


Asunto(s)
Enterovirus Humano D , Infecciones por Enterovirus , Neuroblastoma , Infecciones del Sistema Respiratorio , Humanos , Niño , Enterovirus Humano D/genética , Filogenia , alfa-Fetoproteínas/genética , Neuroblastoma/epidemiología , Infecciones del Sistema Respiratorio/epidemiología , China/epidemiología , Brotes de Enfermedades , Estudios Multicéntricos como Asunto
11.
ACS Synth Biol ; 12(7): 2147-2156, 2023 07 21.
Artículo en Inglés | MEDLINE | ID: mdl-37428865

RESUMEN

Random base editing is regarded as a fundamental method for accelerating the genomic evolution in both scientific research and industrial applications. In this study, we designed a modular interaction-based dual base editor (MIDBE) that assembled a DNA helicase and various base editors through dockerin/cohesin-mediated protein-protein interactions, resulting in a self-assembled MIDBE complex capable of editing bases at any locus in the genome. The base editing type of MIDBE can be readily controlled by the induction of cytidine or/and adenine deaminase gene expression. MIDBE exhibited the highest editing efficiency 2.3 × 103 times greater than the native genomic mutation rate. To evaluate the potential of MIDBE in genomic evolution, we developed a removable plasmid-based MIDBE tool, which led to a remarkable 977.1% increase of lovastatin production in Monascus purpureus HJ11. MIDBE represents the first biological tool for generating and accumulating base mutations in Monascus chromosome and also offers a bottom-up strategy for designing the base editor.


Asunto(s)
Sistemas CRISPR-Cas , Edición Génica , Edición Génica/métodos , Citosina/metabolismo , Adenina/metabolismo , Genómica , Hongos/genética
12.
Exp Neurol ; 363: 114348, 2023 05.
Artículo en Inglés | MEDLINE | ID: mdl-36813224

RESUMEN

Sepsis-induced encephalopathy (SAE) is a detrimental complication in patients with severe sepsis, while there is still no effective treatment. Previous studies have elucidated the neuroprotective effects of glucagon-like peptide-1 receptor (GLP-1R) agonists. However, the role of GLP-1R agonists in the pathological process of SAE is unclear. Here, we found that GLP-1R was up-regulated in the microglia of septic mice. The activation of GLP-1R with Liraglutide could inhibit endoplasmic reticulum stress (ER stress) and associated inflammatory response as well as apoptosis triggered by LPS or tunicamycin (TM) in BV2 cells. In vivo experiments confirmed the benefits of Liraglutide in the regulation of microglial activation, ER stress, inflammation, and apoptosis in the hippocampus of septic mice. Additionally, the survival rate and cognitive dysfunction of septic mice were also improved after Liraglutide administration. Mechanically, cAMP/PKA/CREB signaling is involved in the protection of ER stress-induced inflammation and apoptosis in cultured microglial cells under LPS or TM stimulations. In conclusion, we speculated that GLP-1/GLP-1R activation in microglia might be a potential therapeutic target for the treatment of SAE.


Asunto(s)
Encefalopatía Asociada a la Sepsis , Sepsis , Ratones , Animales , Liraglutida/farmacología , Liraglutida/uso terapéutico , Microglía/patología , Receptor del Péptido 1 Similar al Glucagón/agonistas , Lipopolisacáridos/toxicidad , Apoptosis , Inflamación/etiología , Inflamación/patología , Modelos Animales de Enfermedad , Encefalopatía Asociada a la Sepsis/tratamiento farmacológico , Encefalopatía Asociada a la Sepsis/etiología , Sepsis/complicaciones , Estrés del Retículo Endoplásmico
13.
Environ Res ; 222: 115376, 2023 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-36736755

RESUMEN

Cadmium (Cd) and chromium (Cr) are widespread contaminants with a high risk to the environment and humans. Herein we isolated a novel strain of Serratia marcescens, namely strain S27, from soil co-contaminated with Cd and Cr. This strain showed strong resistance to Cd as well as Cr. S27 cells demonstrated Cd adsorption rate of 45.8% and Cr reduction capacity of 84.4% under optimal growth conditions (i.e., 30 °C, 200 rpm, and pH 7.5). Microscopic characterization of S27 cells revealed the importance of the functional groups C-O-C, C-H-O, C-C, C-H, and -OH, and also indicated that Cr reduction occurred on bacterial cell membrane. Cd(II) and Cr(VI) bioaccumulation on S27 cell surface was mainly in the form of Cd(OH)2 and Cr2O3, respectively. Further, metabolomic analyses revealed that N-arachidonoyl-l-alanine was the key metabolite that promoted Cd and Cr complexation by S27; it primarily promotes γ-linolenic acid (GLA) metabolism, producing siderophores and coordinating with organic acids to enhance metal bioavailability. To summarize, our results suggest that S27 is promising for the bioremediation of environments contaminated with Cd and Cr in tropical regions.


Asunto(s)
Cadmio , Cromo , Humanos , Cromo/metabolismo , Serratia marcescens/metabolismo , Biodegradación Ambiental , Adsorción
14.
ACS Synth Biol ; 12(1): 213-223, 2023 01 20.
Artículo en Inglés | MEDLINE | ID: mdl-36625512

RESUMEN

Gene expression is needed to be conducted in an orthogonal manner and controllable independently from the host's native regulatory system. However, there is a shortage of gene expression regulatory toolboxes that function orthogonally from each other and toward the host. Herein, we developed a strategy based on the mutant library to generate orthogonal gene expression toolboxes. A transcription factor, MaR, located in the Monascus azaphilone biosynthetic gene cluster, was taken as a typical example. Nine DNA-binding residues of MaR were identified by molecular simulation and site-directed mutagenesis. We created five MaR multi-site saturation mutagenesis libraries consisting of 10743 MaR variants on the basis of five cognate promoters. A functional analysis revealed that all five tested promoters were orthogonally regulated by five different MaR variants, respectively. Furthermore, fine gene expression tunability and high signal sensitivity of this toolbox are demonstrated by introducing chemically inducible expression modules, designing synthetic promoter elements, and creating protein-protein interaction between MaRs. This study paves the way for a bottom-up approach to build orthogonal gene expression toolboxes.


Asunto(s)
Monascus , Monascus/genética , Monascus/metabolismo , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Regulación de la Expresión Génica , Regiones Promotoras Genéticas/genética , Expresión Génica
15.
Infect Genet Evol ; 106: 105384, 2022 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-36396029

RESUMEN

Rhinoviruses (RVs) are a major pathogen of community acquired pneumonia in children. To investigate the prevalence and genetic characteristics of RVs in China, we performed a molecular epidemiological study during 2017-2019 in community acquired pneumonia (CAP) in pediatric patients. In this multicenter study, 109 RV-A, 20 RV-B and 80 RV-C were identified. Among them, RV-A12, RV-A101, RV-A78, RV-A49, RV-A22, RV-B52, RV-C2, RV-C53 and RV-C5 were the common genotypes in the study. A total of 23 complete genome of RVs including 4 RV-A, 1 RV-B and 18 RV-C were obtained. Furthermore, in the RV-C isolates, one RV-C5 and five RV-C53 genotypes were found, which have a limited number in the GenBank. Phylogenetic analysis of the complete genome showed that most of the RVs isolated in the study have high nucleotide sequence identities (>95%) compared with the corresponding reference sequence in the GenBank. In RV-A9, RV-A28, RV-A61 and RV-B52, amino acid mutations were found in the potential neutralizing immunogenic (Nim) sites (Nim-1a and Nim-1b) of the VP1. In RV-B52, one of RV-C2 and RV-C5 isolates, amino acid mutations were found in the P1a peptide of the VP1. However, no recombination events were found in the study. In conclusion, RV-A was the predominant specie of RVs followed by RV-C in the study. The complete genomes of one RV-C5 and five RV-C53 genotypes were obtained which have a limited number sequence in the GenBank. High nucleotide sequence identities (>95%) were found among the complete genome obtained in the study and the corresponding reference sequence in the GenBank. Amino acid mutations were found in the potential Nim-1a, Nim-1b sites and P1a peptide region of the VP1 in parts of RVs.


Asunto(s)
Infecciones Comunitarias Adquiridas , Infecciones por Enterovirus , Neumonía , Humanos , Niño , Rhinovirus , Epidemiología Molecular , Filogenia , Infecciones Comunitarias Adquiridas/epidemiología , Aminoácidos/genética
16.
Appl Microbiol Biotechnol ; 106(22): 7519-7530, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36221033

RESUMEN

Monascus azaphilones (MAs) have been extensively applied as natural food coloring agents. MAs are classified into three categories: yellow MAs (YMAs), orange MAs (OMAs), and red MAs with various biological activities. However, the exact biosynthetic mechanism of OMAs and YMAs are not thoroughly elucidated. Firstly, we identified four DNA-binding residues of transcription factor MrPigB and constructed a multi-site saturation mutagenesis library of MrPigB. Then, comparative metabolite and gene expression of the mutants revealed that two oxidoreductases MrPigE and MrPigF were responsible for the formation of YMAs and OMAs. Finally, the in vitro and in vivo assays demonstrated the opposite roles of MrPigE and MrPigF in conversion of OMAs to YMAs. To our knowledge, this is the first report of a binary oxidoreductase system for dynamic regulation of fungal secondary metabolite biosynthesis. Broadly, our work also demonstrates the transcription factor engineering strategy for elucidating the biosynthetic pathway of secondary metabolite. KEY POINTS: • MrPigE converts orange Monascus azaphilones to yellow Monascus azaphilones • MrPigF oxidizes intermediates to afford orange Monascus azaphilones • MrPigE and MrPigF constitute a binary system in Monascus azaphilones biosynthesis.


Asunto(s)
Monascus , Monascus/metabolismo , Oxidorreductasas/metabolismo , Pigmentos Biológicos , Factores de Transcripción/genética , Factores de Transcripción/metabolismo
17.
J Vis Exp ; (184)2022 06 16.
Artículo en Inglés | MEDLINE | ID: mdl-35786609

RESUMEN

Adenoviral vectors have been used as a gene transfer tool in gene therapy for more than three decades. Here, we introduce a protocol to construct an adenoviral vector by manipulating the genomic DNA of wild-type HAdV-7 by using a DNA assembly method. First, an infectious clone of HAdV-7, pKan-Ad7, was generated by fusing the viral genomic DNA with a PCR product from plasmid backbone, comprising of the kanamycin-resistant gene and the origin of replication (Kan-Ori), through DNA assembly. This was done by designing a pair of PCR primers, that contained ~25 nucleotides of the terminal sequence of HAdV-7 inverted terminal repeat (ITR) at the 5' end, a non-cutter restriction enzyme site for HAdV-7 genome in the middle, and a template-specific sequence for PCR priming at the 3' end. Second, an intermediate plasmid-based strategy was employed to replace the E3 region with transgene-expressing elements in the infectious clone to generate an adenoviral vector. Briefly, pKan-Ad7 was digested with dual-cutter restriction enzyme Hpa I, and the fragment containing the E3 region was ligated to another PCR product of plasmid backbone by Gibson assembly to construct an intermediate plasmid pKan-Ad7HpaI. For convenience, restriction-assembly was used to designate the plasmid cloning method of combined restriction digestion and assembly. Using restriction-assembly, the E3 genes in pKan-Ad7HpaI was replaced with a green fluorescent protein (GFP) expression cassette, and the modified E3 region was released from the intermediate plasmid and restored to the infectious clone to generate an adenoviral plasmid pKAd7-E3GFP. Finally, pKAd7-E3GFP was linearized by Pme I digestion and used to transfect HEK293 packaging cells to rescue recombinant HAdV-7 virus. To conclude, a DNA assembly-based strategy was introduced here for constructing adenoviral vectors in general laboratories of molecular biology without the need of specialized materials and instruments.


Asunto(s)
Vectores Genéticos , Tecnología , ADN Viral/genética , Terapia Genética , Vectores Genéticos/genética , Células HEK293 , Humanos
18.
mBio ; 13(4): e0116622, 2022 08 30.
Artículo en Inglés | MEDLINE | ID: mdl-35862785

RESUMEN

Virus-receptor interactions determine viral host range and tissue tropism. CD55 and human neonatal Fc receptor (FcRn) were found to be the binding and uncoating receptors for some of the echovirus-related enterovirus species B serotypes in our previous study. Echovirus 18 (E18), as a member of enterovirus species B, is a significant causative agent of aseptic meningitis and viral encephalitis in children. However, it does not use CD55 as a critical host factor. We conducted CRISPR/Cas9 knockout screening to determine the receptors and entry mechanisms and identified FcRn working as a dual-function receptor for E18. Knockout of FCGRT and B2M, which encode the two subunits of FcRn, prevented infection by E18 and other echoviruses in the same physiological cluster. We then elucidated the underlying molecular mechanism of receptor recognition by E18 using cryogenic electron microscopy. The binding of the FCGRT subunit to the canyon region rotates the residues around the pocket, triggering the release of the pocket factor as observed for other enterovirus species B members. IMPORTANCE E18 is a member of enterovirus species B. As one of the most common enterovirus serotypes in nonpolio enterovirus detection, it easily infects children and causes various clinical symptoms. Aseptic meningitis and viral encephalitis are the most commonly reported syndromes associated with E18. No effective antiviral drugs or approved vaccines are available. Previous studies showed that CD55 and FcRn were the binding and uncoating receptors for some echoviruses. However, we found that CD55 is not the critical host factor for E18. Thus, we want to determine the receptors and elucidate the entry mechanism of E18. Our findings reveal that FcRn is a two-in-one attachment-uncoating receptor for E18.


Asunto(s)
Encefalitis Viral , Infecciones por Enterovirus , Enterovirus , Meningitis Aséptica , Antígenos CD55/metabolismo , Niño , Enterovirus Humano B/genética , Humanos , Recién Nacido
19.
Materials (Basel) ; 15(4)2022 Feb 09.
Artículo en Inglés | MEDLINE | ID: mdl-35207822

RESUMEN

Roll forming can improve the material utilization rate and production efficiency of cups with a curved rotary profile, but there is no basis for the determination of forming limit. The DEFORM-3D software was used to simulate the roll forming of cups. The influence of the billet wall thickness and bottom thickness, coefficient of friction, radius of roller, and the fillet radius of the punch on the forming limit was studied, and the damage value and velocity vector were analyzed. The results showed that the forming limit of the billet's wall thickness in roll forming for a cup is about 62%. With the increase of the ratio of the formed cup's wall thickness to the billet's bottom thickness, the forming limit of wall thickness will be slightly reduced. A larger radius of roller, fillet radius of punch, and friction coefficient between punch and billet and a smaller friction coefficient between roller and billet are good for decreasing the damage value and improving the roll-forming limit. According to the numerical simulation results, the roll-forming limit diagram of cups is established, and the accuracy of the forming limit diagram is verified by experiments.

20.
Materials (Basel) ; 15(3)2022 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-35161002

RESUMEN

Rotating backward extrusion (RBE) is one of severe plastic deformation (SPD) methods used to produce cylindrical components with a very large strain by a single pass. In this study, the microstructure and texture evolution in the different regions of Mg-12Gd-4Y-2Zn-0.5Zr (wt.%) alloys via RBE process were investigated by using optical microscopy (OM), X-ray diffraction (XRD), scanning electron microscopy (SEM) and electron back-scatter diffraction (EBSD). The results showed that the cup-shaped sample formed by RBE process exhibited typical gradient microstructure expanding from its inner wall to outer wall along the radial direction (RD). The average grain size of the RBEed sample decreased when the radius decreased from the edge region to the center region along the RD, which was attributed to the different strains and strain rates in the different regions. It also could be observed that the center region showed highest deformation and the edge region exhibited the lowest deformation in the RBEed sample along the RD. In addition, the grain refinement mechanisms of the experimental alloy containing long-period stacking ordered (LPSO) phases after RBE with 100 N were continuous dynamic recrystallization (CDRX), discontinuous dynamic recrystallization (DDRX) and particle stimulated nucleation (PSN).

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