Performance analysis of a PPM-FSO communication system with an avalanche photodiode receiver over atmospheric turbulence channels with aperture averaging.

The average bit error rate (ABER) performance of an avalanche-photodiode (APD)-based pulse-position modulation (PPM) free-space optical (FSO) communication system is investigated considering the aperture averaging effect. The approximate ABER expression is theoretically derived in terms of M and exponentiated Weibull (EW) distributions under weak-to-strong turbulent atmosphere conditions with a binary PPM (BPPM) scheme. Union-bound and Hermite polynomials are then considered to estimate the performance of M-ary PPM FSO systems. The system performance is analyzed with the aperture sizes, turbulence strengths, receiver temperatures, and average photon counts taken into account. The results show that an optimal average APD gain, which is affected by receiver temperature, can be chosen to minimize the ABER value. And the impact of aperture averaging on the system performance over M distribution is not so apparent as that over EW distribution for different temperatures, turbulent strengths, and average photon counts. In addition, the present APD-based system can offer better ABER performance than that of a P-i-N-based PPM system over both EW and M fading channels at 300 and 500 K. This work is beneficial to the FSO system design.

Impact of nonzero boresight pointing errors on the performance of a relay-assisted free-space optical communication system over exponentiated Weibull fading channels.

The impact of nonzero boresight pointing errors on the system performance of decode-and-forward protocol-based multihop parallel optical wireless communication systems is studied. For the aggregated fading channel, the atmospheric turbulence is simulated by an exponentiated Weibull model, and pointing errors are described by one recently proposed statistical model including both boresight and jitter. The binary phase-shift keying subcarrier intensity modulation-based analytical average bit error rate (ABER) and outage probability expressions are achieved for a nonidentically and independently distributed system. The ABER and outage probability are then analyzed with different turbulence strengths, receiving aperture sizes, structure parameters (P and Q), jitter variances, and boresight displacements. The results show that aperture averaging offers almost the same system performance improvement with boresight included or not, despite the values of P and Q. The performance enhancement owing to the increase of cooperative path (P) is more evident with nonzero boresight than that with zero boresight (jitter only), whereas the performance deterioration because of the increasing hops (Q) with nonzero boresight is almost the same as that with zero boresight. Monte Carlo simulation is offered to verify the validity of ABER and outage probability expressions.

Osteoblast differentiation in vitro and in vivo promoted by Osterix.

C3H10T1/2/Osx, a stably transfected cell line with Osterix (Osx), was produced and chondrocytic and osteoblastic differentiation were studied in vitro. Osx promoted osteoblastic lineage that was dexamethasone dependent. Furthermore, in vivo, Osx induced ectopic mineralization in a heterotopic mouse muscle model. Skeletogenesis involves a cascade of molecular activities sequentially performed by osteoblasts and chondroblasts. A transcriptional factor gene Osx appears to influence cell disposition toward the chondrocytic or osteoblastic phenotype and therefore may be an important signaling cue for bone formation. Understanding the molecular conditions involved with Osx promoted osteoblast differentiation will facilitate therapeutic applications of Osx. Consequently, the objective of this study was to investigate chondrocytic and osteoblastic phenotype differentiation using an Osx plasmid DNA exploiting both in vitro and in vivo methodologies. In vitro, a stably transfected C3H10T1/2/Osx cell line was established and promotion of either an osteoblast or chondroblast phenotype was performed by selectively introducing dexamethasone (dex) and assaying mRNA content and phenotype markers. In vivo, a mouse muscle model was used to determine heterotopic ossification using designated Osx plasmid DNA doses incorporated in a (50:50 Poly (D,L-lactide-co-glycolide) (i.e., PLGA) 3D scaffold. Histological assessment was used to determine implant responses. Quantitative real-time polymerase chain reaction (q-RT-PCR) showed a significant increase in mRNA expression of osteocalcin (Ocn), Runx2, osteonectin (On) and osteopontin (Op) (p < 0.05) in the C3H10T1/2/Osx cells compared to the empty vector transfected cell control. At day 21, mineralization was demonstrated in the cultures of C3H10T1/2/Osx exposed to dex, but neither in cultures lacking dex nor controls. In the absence of dex, C3H10T1/2/Osx cells revealed a significantly higher expression of Sox9 and Aggrecan (Agc). In vivo, 80 microg of Osx plasmid DNA induced heterotopic mineralization 4 weeks following implantation in a mouse muscle model and the effect was dependent on the Osx plasmid DNA dose delivered in the PLGA scaffold. Using a non-committed cell line (C3H10T1/2), cell differentiation to an osteoblast phenotype appears to be dependent upon an interaction between intracellular events initiated by the transcriptional factor Osx and the presence of dex. The in vivo findings suggest Osx may promote osteoblast differentiationand mineralization at a heterotopic site.

Gene expression profiling of bone marrow stromal cells from juvenile, adult, aged and osteoporotic rats: with an emphasis on osteoporosis.

PURPOSE: Osteoporosis is a multi-factorial, age-related disease with a complex etiology and mode of regulation involving a large numbers of genes. To better understand the possible relationships among genes, we fingerprinted genes in a rat model induced by ovariectomy to determine differences among osteoporotic, non-osteoporotic, aged and juvenile rats. METHODS: We applied genome wide cDNA microarray technology to analyze genes expressed in bone marrow mesenchymal stromal cells (BMSC) and compared non-osteoporotic adult vs. osteoporotic, non-osteoporotic adult vs. aged, and non-osteoporotic adult vs. juvenile. Rigorous statistical analysis of functional annotation (EASE program) identified over-represented biological and molecular functions with significant group wide changes (p< or =0.05). Some of the expressed genes were further confirmed by quantitative RT-PCR (reverse transcription-polymerase chain reaction). RESULTS: Differences in gene expression were observed by identifying transcripts selected by t-test that were consistently changed by a minimum of two-fold. There were 195 transcripts that showed an increased expression and 109 transcripts that showed decreased expression relative to the osteoporotic condition. Of these, 75% transcripts were unknown gene products or ESTs (expressed sequence tag). A number of genes found in the aged and juvenile groups were not present in the osteoporotic rats. Functional clustering of the genes using the EASE bioinformatics program revealed that transcripts in osteoporosis were associated with signal transduction, lipid metabolism, protein metabolism, ionic and protein transport, neuropeptide and G protein signaling pathways. Although some of the genes have previously been shown to play a key role in osteoporosis, several genes were uniquely identified in this study and likely play a role in developing aged related osteoporosis that could have compelling implications in the development of new diagnostic strategies and therapeutics for osteoporosis. CONCLUSIONS: These data suggest that osteoporosis is associated with changes of multiple novel gene expression and that numerous pathways could play important roles in osteoporosis pathogenesis.

A calcium phosphate-based gene delivery system.

Although nonviral vectors have lower transfection efficiency than viral vectors, the excellent safety profile of nonviral vectors is appealing for gene therapy. An efficient, simple nonviral vector gene delivery system has been designed that includes plasmid DNA-calcium phosphate precipitates (pDNA-CaP) and porous collagen spheres (Cultispherestrade mark). The hypothesis for this study was the pDNA-CaP would achieve efficient plasmid DNA transfection and the porous collagen spheres would provide a suitable delivery carrier system for three-dimensional (3D) administration. To test the hypothesis, plasmid DNA including the LacZ reporter gene encoding beta-galactosidase was precipitated with CaP to form particles of compacted LacZ-CaP and delivered directly or by Cultispherestrade mark to cells in vitro. The transfection efficiency was determined by beta-galactosidase gene expression. Results indicated that pLacZ-CaP promoted 25-84% of transfection efficiency in a broad cell line spectrum and in flexible experimental conditions. Maximum transfection efficiency was achieved by having mostly nano-sized partles (50-200 nm in diameter) of pDNA-CaP precipitates. Seeding density of 0.7-4 x 10(4) cells/cm2 provided sufficient transfection efficiency, and storage of pDNA-CaP at 4 degrees C was most efficient to preserve transfection efficacy for up to 3 days. The pDNA-CaP worked well in the presence of serum and serum-free conditions and was less cytotoxic than the liposomes. Cultispherestrade mark carrying plasmid LacZ-CaP was an effective 3D system for gene delivery. The technique described here is a simple and safe procedure to deliver genes, and may have application to regenerate bone and other tissues.

Jittery, a Mutator distant relative with a paradoxical mobile behavior: excision without reinsertion.

The unstable mutation bz-m039 arose in a maize (Zea mays) stock that originated from a plant infected with barley stripe mosaic virus. The instability of the mutation is caused by a 3.9-kb mobile element that has been named Jittery (Jit). Jit has terminal inverted repeats (TIRs) of 181 bp, causes a 9-bp direct duplication of the target site, and appears to excise autonomously. It is predicted to encode a single 709-amino acid protein, JITA, which is distantly related to the MURA transposase protein of the Mutator system but is more closely related to the MURA protein of Mutator-like elements (MULEs) from Arabidopsis thaliana and rice (Oryza sativa). Like MULEs, Jit resembles Mutator in the length of the element's TIRs, the size of the target site duplication, and in the makeup of its transposase but differs from the autonomous element Mutator-Don Robertson in that it encodes a single protein. Jit also differs from Mutator elements in the high frequency with which it excises to produce germinal revertants and in its copy number in the maize genome: Jit-like TIRs are present at low copy number in all maize lines and teosinte accessions examined, and JITA sequences occur in only a few maize inbreds. However, Jit cannot be considered a bona fide transposon in its present host line because it does not leave footprints upon excision and does not reinsert in the genome. These unusual mobile element properties are discussed in light of the structure and gene organization of Jit and related elements.

Intraspecific violation of genetic colinearity and its implications in maize.

Although allelic sequences can vary extensively, it is generally assumed that each gene in one individual will have an allelic counterpart in another individual of the same species. We report here that this assumption does not hold true in maize. We have sequenced over 100 kb from the bz genomic region of two different maize lines and have found dramatic differences between them. First, the retrotransposon clusters, which comprise most of the repetitive DNA in maize, differ markedly in make-up and location relative to the genes in the bz region. Second, and more importantly, the genes themselves differ between the two lines, demonstrating that genetic microcolinearity can be violated within the same species. Our finding has bearing on the underlying genetic basis of hybrid vigor in maize, and possibly other organisms, and on the measurement of genetic distances.

Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude.

Genetic map length and gene number in eukaryotes vary considerably less than genome size, giving rise to the hypothesis that recombination is restricted to genes. The complex genome of maize contains a large fraction of repetitive DNA, composed principally of retrotransposons arranged in clusters. Here, we assess directly the contribution of retrotransposon clusters and genes to genetic length. We first measured recombination across adjacent homozygous genetic intervals on either side of the bronze (bz) locus. We then isolated and characterized two bacterial artificial chromosome clones containing those intervals. Recombination was almost 2 orders of magnitude higher in the distal side, which is gene-dense and lacks retrotransposons, than in the proximal side, which is gene-poor and contains a large cluster of methylated retrotransposons. We conclude that the repetitive retrotransposon DNA in maize, which constitutes the bulk of the genome, most likely contributes little if any to genetic length.