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1.
Spectrochim Acta A Mol Biomol Spectrosc ; 205: 179-185, 2018 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-30015023

RESUMEN

The Kr-CH3OH (Krypton-Methanol) system has several technological applications, such as the determination of diffusivity coefficients, their use in the development of detectors and combustion techniques among others. We report an extensive theoretical study concerning the stability of such complex. A mix between molecular dynamics, electronic structure calculations and solution of the nuclear Schrodinger equation lead to investigation of spectroscopic constants, lifetime of the complex and its Quantum Theory Atom in Molecules (QTAIM) properties. The study of the Potential Energy Curves (PEC) suggested three configurations to be stable as their potential well were able to harbor 9 vibrational levels. Properties from the curves also allowed us to obtain the lifetime of the complex, whose values were >1 ps regardless of the conformation. Furthermore, topological investigations of the charge density profile of the complex, in the scope of QTAIM properties, show that van der Waals type interactions takes place between the noble gas and the methanol molecule. These features are in consonance to the experimental fact that this complex is stable.

2.
J Mol Model ; 24(1): 32, 2017 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-29282561

RESUMEN

The optical properties of systems composed of the polymers PolyeraActivInk™ N2200 and P3HT are experimentally and theoretically investigated using UV-Vis spectroscopy and time-dependent density functional theory calculations, respectively. From a theoretical point of view, we carried out an analysis considering several functionals and model oligomers of different sizes to mimic the polymers. As our studies were performed with and without solvents, a first important result regards the fact that, by considering solvent effects, a better agreement between theoretical and experimental results could be achieved. Our findings also show that an optimally tuned functional is better suited to describe the experimental absorption profile than a hybrid one for the flexible polymer (P3HT). For the almost rigid polymer considered here (N2200), on the other hand, hybrid functionals may perform better than tuned functionals.


Asunto(s)
Simulación por Computador , Polímeros/química , Tiofenos/química , Solventes/química , Análisis Espectral , Rayos Ultravioleta
3.
J Mol Model ; 23(7): 196, 2017 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-28589463

RESUMEN

We present an extensive study of the optical properties of Myrcia sylvatica essential oil with the goal of investigating the suitability of its material system for uses in organic photovoltaics. The methods of extraction, experimental analysis, and theoretical modeling are described in detail. The precise composition of the oil in our samples is determined via gas chromatography, mass spectrometry, and X-ray scattering techniques. The measurements indicate that, indeed, the material system of Myrcia sylvatica essential oil may be successfully employed for the design of organic photovoltaic devices. The optical absorption of the molecules that compose the oil are calculated using time-dependent density functional theory and used to explain the measured UV-Vis spectra of the oil. We show that it is sufficient to consider the α-bisabolol/cadalene pair, two of the main constituents of the oil, to obtain the main features of the UV-Vis spectra. This finding is of importance for future works that aim to use Myrcia sylvatica essential oil as a photovoltaic material.


Asunto(s)
Myrtaceae/química , Aceites Volátiles/química , Cromatografía de Gases , Espectrometría de Masas , Difracción de Rayos X
4.
J Mol Model ; 23(5): 172, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28455637

RESUMEN

Phthalocyanines represent a crucial class of organic compounds with high technological appeal. By doping the center of these systems with metals, one obtains the so-called metal-phthalocyanines, whose property of being an effective electron donor allows for potentially interesting uses in organic electronics. In this sense, investigating optical and electronic structure changes in the phthalocyanine profiles in the presence of different metals is of fundamental importance for evaluating the appropriateness of the resulting system as far as these uses are concerned. In the present work, we carry out this kind of effort for phthalocyanines doped with different metals, namely, copper, nickel, and magnesium. Density functional theory was applied to obtain the absorption spectra, and electronic and structural properties of the complexes. Our results suggest that depending on the dopant, a different level of change is achieved. Moreover, electrostatic potential energy mapping shows how the charge distribution can be affected by solar radiation. Our contribution is crucial in describing the best possible candidates for use in different organic photovoltaic applications. Graphical Abstract Representation of meta-phthalocyanine systems. All calculations of this work are based on varying metal position along z axis, considering the z-axis has its zero point matching with the center of phthalocyanine cavityconsidering.

5.
J Mol Model ; 23(5): 153, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28378241

RESUMEN

Pentacene is an organic semiconductor that draws special attention from the scientific community due to the high mobility of its charge carriers. As electron-hole interactions are important aspects in the regard of such property, a computationally inexpensive method to predict the coupling between these quasi-particles is highly desired. In this work, we propose a hybrid methodology of combining Uncoupled Monte Carlo Simulations (UMC) and Density functional Theory (DFT) methodologies to obtain a good compromise between computational feasibility and accuracy. As a first step in considering a Pentacene crystal, we describe its unit cell: the Pentacene Dimer. Because many conformations can be encountered for the dimer and considering the complexity of the system, we make use of UMC in order to find the most probable structures and relative orientations for the Pentacene-Pentacene complex. Following, we carry out electronic structure calculations in the scope of DFT with the goal of describing the electron-hole coupling on the most probable configurations obtained by UMC. The comparison of our results with previously reported data on the literature suggests that the methodology is well suited for describing transfer integrals of organic semiconductors. The observed accuracy together with the smaller computational cost required by our approach allows us to conclude that such methodology might be an important tool towards the description of systems with higher complexity.

6.
J Mol Model ; 23(3): 71, 2017 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-28197842

RESUMEN

By means of Density functional theory and time-dependent density functional theory calculations, we present a comprehensive investigation on the influence of different functional schemes on electronic and optical properties of the phthalocyanine molecule. By carrying out our own tuning on the OT-LC-BLYP/6-31G(d,p) functional, we show that such a procedure is fundamental to accurately match experimental results. We compare our results to several others available in the literature, including the B3LYP/6-31+G(d,p) set, which is commonly portrayed as the best combination in order to obtain a good description of the band gap. The results obtained here present not only significant improvement of the optical properties from the conventional BLYP, but we can also objectively report an improvement of our tuned functional when compared to the current benchmark of the literature as far as optical properties are concerned. Particularly, by means of this approach, it was possible to achieve a good agreement between the theoretical and experimental optical gap as well as of the positioning of the main peaks in the absorption spectrum. Our results thus suggest that correcting the long-range term on exchange term of the Coulomb operator, by means of a tuning procedure, is a good option to accurately describe properties of the phthalocyanine molecule.

7.
J Mol Model ; 23(2): 37, 2017 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-28120120

RESUMEN

The optical properties of polymer/solvent systems composed by the polymers P3HT and PolyeraActivInk N2200 under the present of chloroform as solvent are experimentally and theoretically investigated using UV-Vis spectroscopy, molecular dynamics (MD), and density functional theory (DFT) calculations. The study is focused on obtaining the theoretical methodologies that properly describes the experimentally obtained absorption spectra of polymer-solvent complexes. In order to investigate the solvent influence, two different approaches are taken into account: the solvation shell method (SSM) and the polarizable continuum model (PCM). Our findings shown that SSM simulations, which combine MD and DFT calculations, are in good agreement with the experimental data. Moreover, it is obtained that simulations in the framework of PCM do not provide a fair description of the real system. Importantly, these results may pave the way for better descriptions of some optoelectronic properties of interest in polymer/solvent systems. Graphical Abstract ᅟ.

8.
J Chem Phys ; 136(13): 134319, 2012 Apr 07.
Artículo en Inglés | MEDLINE | ID: mdl-22482564

RESUMEN

For the first time in the literature, rigorous time-independent quantum scattering formalism was applied, by means of the ABC program, to the H + Li(2) → LiH + Li reaction. The state-to-state probabilities as a function of the total energy have been computed at zero total angular momentum (J = 0) allowing us to evaluate the effect of vibrational/rotational excitation on the reaction promotion/inhibition, the energetic distribution of products, and the temperature dependence of the J-shifting thermal rate coefficients.

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