Chiral Imprinting in the Gas Phase.

Undoing the twist: Recent successful attempts to change the relative populations of two otherwise identical enantiomers of a large gas-phase molecule using resonant microwave fields are highlighted. Specifically, the population of a specific enantiomer of a chiral terpene could be enhanced relative to the other enantiomer by the application of a sequence of microwave pulses in a phase- and polarization-controlled manner.

Rotationally resolved electronic spectroscopy of the rotamers of 1,3-dimethoxybenzene.

Conformational assignments in molecular beam experiments are often based on relative energies, although there are many other relevant parameters, such as conformer-dependent oscillator strengths, Franck-Condon factors, quantum yields and vibronic couplings. In the present contribution, we investigate the conformational landscape of 1,3-dimethoxybenzene using a combination of rotationally resolved electronic spectroscopy and high level ab initio calculations. The electronic origin of one of the three possible planar rotamers (rotamer (0,180) with both substituents pointing at each other) has not been found. Based on the calculated potential energy surface of 1,3-dimethoxybenzene in the electronic ground and lowest excited state, we show that this can be explained by a distorted non-planar geometry of rotamer (0,180) in the S1 state.

Electronic spectra of 2- and 3-tolunitrile in the gas phase. II. Geometry changes from Franck-Condon fits of fluorescence emission spectra.

We determined the changes of the geometries of 2- and 3-tolunitrile upon excitation to the lowest excited singlet states from Franck-Condon fits of the vibronic intensities in several fluorescence emission spectra and of the rotational constant changes upon excitation. These structural changes can be connected to the altered electron distribution in the molecules and are compared to the results of ab initio calculations. We show how the torsional barriers of the methyl groups in both components are used as probe of the molecular changes upon electronic excitation.

Electronic spectra of 2- and 3-tolunitrile in the gas phase. I. A study of methyl group internal rotation via rovibronically resolved spectroscopy.

Rotationally resolved fluorescence excitation spectra of the origin bands in the S1 ← S0 transition of 2-tolunitrile (2TN) and 3-tolunitrile (3TN) have been recorded in the collision-free environment of a molecular beam. Analyses of these data provide the rotational constants of each molecule and the potential energy curves governing the internal rotation of the attached methyl groups in both electronic states. 2TN exhibits much larger barriers along this coordinate than 3TN. Interestingly, the electronic transition dipole moment in both molecules is markedly influenced by the position of the attached methyl group rather than the position of the cyano group; possible reasons for this intriguing behavior are discussed.

Intramolecular structure and dynamics of mequinol and guaiacol in the gas phase: Rotationally resolved electronic spectra of their S1 states.

The molecular structures of guaiacol (2-methoxyphenol) and mequinol (4-methoxyphenol) have been studied using high resolution electronic spectroscopy in a molecular beam and contrasted with ab initio computations. Mequinol exhibits two low frequency bands that have been assigned to electronic origins of two possible conformers of the molecule, trans and cis. Guaiacol also shows low frequency bands, but in this case, the bands have been assigned to the electronic origin and vibrational modes of a single conformer of the isolated molecule. A detailed study of these bands indicates that guaiacol has a vibrationally averaged planar structure in the ground state, but it is distorted along both in-plane and out-of-plane coordinates in the first electronically excited state. An intramolecular hydrogen bond involving the adjacent -OH and -OCH3 groups plays a major role in these dynamics.

Delicate balance of hydrogen bonding forces in D-threoninol.

The seven most stable conformers of D-threoninol (2(S)-amino-1,3(S)-butanediol), a template used for the synthesis of artificial nucleic acids, have been identified and characterized from their pure rotational transitions in the gas phase using chirped-pulse Fourier transform microwave spectroscopy. D-Threoninol is a close analogue of glycerol, differing by substitution of an NH2 group for OH on the C(ß) carbon and by the presence of a terminal CH3 group that breaks the symmetry of the carbon framework. Of the seven observed structures, two are H-bonded cycles containing three H-bonds that differ in the direction of the H-bonds in the cycle. The other five are H-bonded chains containing OH···NH···OH H-bonds with different directions along the carbon framework and different dihedral angles along the chain. The two structural types (cycles and chains of H-bonds) are in surprisingly close energetic proximity. Comparison of the rotational constants with the calculated structures at the MP2/6-311++G(d,p) level of theory reveals systematic changes in the H-bond distances that reflect NH2 as a better H-bond acceptor and poorer donor, shrinking the H-bond distances by ∼0.2 Å in the former case and lengthening them by a corresponding amount in the latter. Thus revealed is the subtle effect of asymmetric substitution on the energy landscape of a simple molecule, likely to be important in living systems.

Excited electronic state mixing in 7-azaindole. Quantitative measurements using the Stark effect.

Stark effect measurements of the +280 cm(-1) vibronic band at ∼286 nm in the high resolution S1-S0 fluorescence excitation spectrum of 7-azaindole (7AI) in a molecular beam show that the permanent (electric) dipole moment (PDM) of the upper state vibrational level reached in this transition is 4.6 D, twice as large as the PDM of the zero-point level of the S1 state. This large difference is attributed to state mixing with a more polar state. EOM-CSSD calculations suggest that this more polar state is σπ* in nature and that it crosses the ππ* state in energy along the coordinate connecting the two potential energy minima. Such state mixing apparently provides more facile access to conical intersections with the ground state, and subsequent hydrogen atom detachment reactions, since independent studies by Sakota and Sekiya have shown that the N-H stretching frequency of 7AI is significantly reduced when it is excited to the +280 cm(-1) vibrational level of the S1 state.

Spontaneous formation of hydrophobic domains in isolated peptides.

Aromatic amino acids are known for their hydrophobicity and the active role they play in protein folding. Here, we investigate the intrinsic propensity of small peptides to form hydrophobic domains in the absence of solvent water molecules. The structures of three aromatic-rich isolated peptides, Ac-Phe-Phe-NH2 (FF), Ac-Trp-Tyr-NH2 (WY), and Ac-Phe-Phe-Phe-NH2 (FFF), all in the gas phase, have been studied by infrared-ultraviolet (IR/UV) double resonance laser spectroscopy, aided by dispersion-corrected density functional theory (DFT-D) calculations. Spontaneous formation of hydrophobic domains is systematically observed, whatever the secondary structure adopted by the backbone. Various types of aromatic-aromatic arrangements have been identified and associated to specific secondary structures, illustrating the interplay between the hydrophobic clusters and the backbone. Backbone NH amide groups surrounded by aromatic rings have also been evidenced and are found to contribute significantly to the stabilization of aromatic pairs. These results suggest that the formation of aromatic clusters involving contiguous residues might be a very efficient process leading to the formation of hydrophobic domains in the early stages of protein folding, well before a hydrophobic collapse into the tertiary structure.

High-resolution electronic spectroscopy of the doorway states to intramolecular charge transfer.

Reported here are several of the ground, first, and second excited state structures and dipole moments of three benchmark intramolecular charge transfer (ICT) systems; 4-(1H-pyrrol-1-yl)benzonitrile (PBN), 4,4'-dimethylaminobenzonitrile (DMABN), and 4-(1-pyrrolidinyl)benzonitrile (PYRBN), isolated in the gas phase and probed by rotationally resolved spectroscopy in a molecular beam. The related molecules 1-phenylpyrrole (PP) and 4-aminobenzonitrile (ABN) also are discussed. We find that the S1 electronic state is of B symmetry in all five molecules. In PBN, a second excited state (S2) of A symmetry is found only ~400 cm(-1) above the presumed origin of the S1 state. The change in dipole moment upon excitation to the A state is measured to be Δµ ≈ 3.0 D, significantly smaller than the value predicted by theory and also smaller than that observed for the "anomalous" ICT band of PBN in solution. The B state dipole moments of DMABN and PYRBN are large, ~10.6 D, slightly larger than those attributed to "normal" LE fluorescence in solution. In addition, we find the unsaturated donor molecules (PP, PBN) to be twisted in their ground states and to become more planar upon excitation, even in the A state, whereas the saturated donor molecules (ABN, DMABN, PYRBN), initially planar, either remain planar or become more twisted in their excited states. It thus appears that the model that is appropriate for describing ICT in these systems depends on the geometry of the ground state.

Experimentally measured permanent dipoles induced by hydrogen bonding. The Stark spectrum of indole-NH3.

Hydrogen bond pairs involving the chromophore indole have been extensively studied in the gas phase. Here, we report high resolution electronic spectroscopy experiments on the indole-NH(3) hydrogen bond pair in the absence and presence of an electric field. The S(1)-S(0) origin band of this complex recorded in zero field at high resolution reveals two overlapping spectra; a consequence of NH(3) hindered internal rotation. The barrier to internal rotation is predicted by theory to be less than 20 cm(-1) in the ground state, therefore requiring a non-rigid rotor Hamiltonian to interpret the spectra. Conducting the experiment in the presence of an applied electric field further perturbs the already congested spectrum of the complex, but makes possible the measurement of the permanent electric dipole moments in its S(0) and S(1) states. These values reveal significant changes in electron distribution that arise from hydrogen bonding effects.

Excited state electron transfer precedes proton transfer following irradiation of the hydrogen-bonded single water complex of 7-azaindole with UV light.

High resolution electronic spectra of the single water complex of 7-azaindole (7AIW) and of a deuterated analog (7AIW-d(3)) have been recorded in a molecular beam, both in the absence and presence of an applied electric field. The obtained data include the rotational constants of both complexes in their ground (S(0)) and first excited (S(1)) electronic states, their S(1)-S(0) electronic transition moment and axis-tilting angles, and their permanent electric dipole moments (EDM's) in both electronic states. Analyses of these data show that the water molecule forms two hydrogen bonds with 7AI, a donor O-H···N(7) bond and an acceptor O···H-N(1) bond. The resulting structure has a small EDM in the S(0) state (µ = 0.54 D) but a greatly enhanced EDM in the S(1) state (µ = 3.97 D). We deduce from the EDM's of the component parts that 0.281 e(-) of charge is transferred from the acidic N(1)-H site to the basic N(7) site upon UV excitation of 7AIW, but that water-assisted proton transfer from N(1) to N(7) does not occur. A model of the resulting electrostatic interactions in the solute-solvent pair predicts a solvent-induced red-shift of 1260 cm(-1) which compares favorably to the experimental value of 1290 cm(-1).

Microwave and UV excitation spectra of 4-fluorobenzyl alcohol at high resolution. S0 and S1 structures and tunneling motions along the low frequency -CH2OH torsional coordinate in both electronic states.

Rotationally resolved electronic spectra of several low frequency vibrational bands that appear in the S(1) ← S(0) transition of 4-fluorobenzyl alcohol (4FBA) in the collision-free environment of a molecular beam have been observed and assigned. Each transition is split into two or more components by the tunneling motion of the attached -CH(2)OH group. A similar splitting is observed in the microwave spectrum of 4FBA. Analyses of these data show that 4FBA has a gauche structure in both electronic states, but that the ground state C(1)C(2)-C(7)O dihedral angle of ∼60° changes by ∼30° when the photon is absorbed. The barriers to the torsional motion of the attached -CH(2)OH group are also quite different in the two electronic states; V(2) ∼ 300 cm(-1) high and ∼60° wide in the S(0) state, and V(2) ∼ 300 cm(-1) high and ∼120° wide (or V(2) ∼ 1200 cm(-1) high and ∼60° wide) in the S(1) state. Possible reasons for these behaviors are discussed.

On the excited state dynamics of vibronic transitions. High-resolution electronic spectra of acenaphthene and its argon van der Waals complex in the gas phase.

Rotationally resolved fluorescence excitation spectroscopy has been used to study the dynamics, electronic distribution, and the relative orientation of the transition moment vector in several vibronic transitions of acenaphthene (ACN) and in its Ar van der Waals (vdW) complex. The 0(0)(0) band of the S(1) ← S(0) transition of ACN exhibits a transition moment orientation parallel to its a-inertial axis. However, some of the vibronic bands exhibit a transition moment orientation parallel to the b-inertial axis, suggesting a Herzberg-Teller coupling with the S(2) state. Additionally, some other vibronic bands exhibit anomalous intensity patterns in several of their rotational transitions. A Fermi resonance involving two near degenerate vibrations has been proposed to explain this behavior. The high-resolution electronic spectrum of the ACN-Ar vdW complex has also been obtained and fully analyzed. The results indicate that the weakly attached argon atom is located on top of the plane of the bare molecule at ~3.48 Šaway from its center of mass in the S(0) electronic state.

High-resolution electronic spectroscopy studies of meta-aminobenzoic acid in the gas phase reveal the origins of its solvatochromic behavior.

A theoretical and experimental investigation of meta-aminobenzoic acid (MABA) in the gas phase is presented, with the goal of understanding counterintuitive observations on the solvatochromism of this "push-pull" molecule. The adiabatic excitation energies, transition moments, and excited-state structures are examined using the complete active space self-consistent field approach (CASSCF and CASPT2), which shows the first excited electronic state of MABA to be of greater charge transfer character than was found in the para-isomer (PABA). The rotationally resolved electronic spectrum of MABA reveals the existence of two rotamers, owing to asymmetry in the carboxylic acid functional group. Stark measurements in a molecular beam show the change in permanent dipole moment upon excitation to be Δµ≈3.5 D for both rotamers, more than three times larger than that found in PABA. The excited state measurements reported here, along with supporting data from theory, clearly demonstrate how the meta-directing effects of asymmetric substitution in aniline derivatives can drive charge transfer pathways in the isolated molecule.

Exploring single and double proton transfer processes in the gas phase: a high resolution electronic spectroscopy study of 5-fluorosalicylic acid.

Two species that possess different absorption and emission properties have been observed in the low resolution fluorescence excitation spectrum of 5-fluorosalicylic acid (FSA) in the gas phase. The two species were identified as monomer and dimer species using high resolution techniques. Studies of these spectra in the presence of an applied electric field, together with ab initio quantum chemistry calculations, show that the monomer is a "closed" form of FSA exhibiting an intramolecular C = O⋅⋅⋅H-O-C hydrogen bond in the ground state. Absorption of light at ∼344 nm transforms this species into the tautomeric form C-O-H⋅⋅⋅O = C via a barrierless proton transfer process. The large charge rearrangement that accompanies this process results in a significantly red-shifted emission spectrum. The (FSA)(2) dimer exhibits two intermolecular C=O⋯H-O-C hydrogen bonds but in this case the double proton transfer leads to a conical intersection with the ground state and rapid nonradiative decay. The onset of this process and the time scale on which it occurs are revealed by a homogeneous broadening of the dimer's high resolution spectrum.

Flickering dipoles in the gas phase: structures, internal dynamics, and dipole moments of ß-naphthol-H2O in its ground and excited electronic states.

Described here are the rotationally resolved S(1)-S(0) electronic spectra of the acid-base complex cis-ß-naphthol-H(2)O in the gas phase, both in the presence and absence of an applied electric field. The data show that the complex has a trans-linear O-H⋅⋅⋅O hydrogen bond configuration involving the -OH group of cis-ß-naphthol and the oxygen lone pairs of the attached water molecule in both electronic states. The measured permanent electric dipole moments of the complex are 4.00 and 4.66 D in the S(0) and S(1) states, respectively. These reveal a small amount of photoinduced charge transfer between solute and solvent, as supported by density functional theory calculations and an energy decomposition analysis. The water molecule also was found to tunnel through a barrier to internal motion nearly equal in energy to kT at room temperature. The resulting large angular jumps in solvent orientation produce "flickering dipoles" that are recognized as being important to the dynamics of bulk water.

Next generation techniques in the high resolution spectroscopy of biologically relevant molecules.

Recent advances in the technology of test and measurement equipment driven by the computer and telecommunications industries have made possible the development of a new broadband, Fourier-transform microwave spectrometer that operates on principles similar to FTNMR. This technique uses a high sample-rate arbitrary waveform generator to construct a phase-locked chirped microwave pulse that gives a linear frequency sweep over a wide frequency range in 1 µs. The chirped pulse efficiently polarizes the molecular sample at all frequencies lying within this band. The subsequent free induction decay of this polarization is measured with a high-speed digitizer and then fast Fourier-transformed to yield a broadband, frequency-resolved rotational spectrum, spanning up to 11.5 GHz and containing lines that are as narrow as 100 kHz. This new technique is called chirped-pulse Fourier transform microwave (CP-FTMW) spectroscopy. The technique offers the potential to determine the structural and dynamical properties of very large molecules solely from fully resolved pure rotational spectra. FTMW double resonance techniques employing a low-resolution UV laser facilitate an easy assignment of overlapping spectra produced by different conformers in the sample. Of particular interest are the energy landscapes of conformationally flexible molecules of biological importance, including studies of their interaction with solvent and/or other weakly bound molecules. An example is provided from the authors' work on p-methoxyphenethylamine, a neurotransmitter, and its complexes with water.

Ground state 14N quadrupole couplings in the microwave spectra of N,N'-dimethylaniline and 4,4'-dimethylaminobenzonitrile.

Microwave spectra of N,N'-dimethylaniline and 4,4'-dimethylaminobenzonitrile have been recorded in a pulsed supersonic jet using chirped pulse techniques. Experimental substitution structures have been determined for both molecules by detection of the spectra of all (13)C and (15)N isotopomers in natural abundance using a broadband spectrometer. Additionally, a narrowband spectrometer has been used to reveal the (14)N quadrupole splittings at high resolution, from which the orbital occupancy numbers of the amino- and cyano-nitrogen atoms have been determined. An apparent direct relationship between these values and the barriers to inversion of the amino groups is discussed.

Structural studies of biomolecules in the gas phase by chirped-pulse Fourier transform microwave spectroscopy.

Studies of the gas phase structures of biomolecules provide an important connection to theoretical methods for modeling large molecular structures. The key features of biomolecule structures, such as their conformational flexibility and the complexes they form through intermolecular interactions, pose major challenges to spectroscopic techniques. Rotationally resolved spectroscopy holds the possibility of true structure determination where analysis of the spectra of isotopic species provides actual atom positions in the three-dimensional structure. Molecular rotational spectroscopy is ideally suited for this type of study because it offers high spectral resolution and is generally applicable (requiring only a polar molecule). A chirped-pulse Fourier transform microwave (CP-FTMW) spectrometer has been optimized for biomolecular spectroscopy. The sensitivity of this technique makes it possible to perform heavy atom (13C, 15N, 18O) structure determination using the natural abundance of the isotopes. The performance of the spectrometer is illustrated by obtaining the structure of the phenol dimer, a model system that is a challenge for theoretical methods. For application to larger biomolecule systems, it is expected that rotational spectroscopy alone will face challenges in making structural determinations. The scope of problems that can be addressed by rotational spectroscopy can be expanded through double-resonance spectroscopy approaches that provide a "second dimension" of structural information. A general method to implement laser-microwave double resonance spectroscopy is described. We also discuss the potential for developing low-cost microwave detectors for biomolecular spectroscopy that achieve savings by reducing the measurement bandwidth. This approach is particularly promising for developing low-frequency CP-FTMW spectrometers that are well-suited for large molecule rotational spectroscopy.