Physiological and Biochemical Strategies of Adaptation in Halophytes.

The relationship between the ecological adaptive strategies of some halophyte groups and their metabolism has been demonstrated; this correlation determines their competitive capabilities and place in the ecosystem. The features of the content of total and membrane lipids, chlorophylls, carotenoids, and membrane and water-soluble proteins, as well as the level of lipid peroxidation, hydration of photosynthetic organs, and sodium accumulation in euhalophytes, crynohalophytes, and glycohalophytes, which are confined to different levels of soil salinity, have been established.

XAS studies of pressure-induced structural and electronic transformations in α-FeOOH.

Structural and electronic transformation taking place in α-FeOOH goethite have been studied by Fe K-edge x-ray absorption spectroscopy at pressures up to 50 GPa. These studies have shown the symmetrization of FeO6 octahedra coinciding with the Fe3+ high to low spin transition at pressure above ~45 GPa. Our data are in excellent agreement with the results of recent single crystal XRD and Mössbauer spectroscopy studies (Xu et al 2013 Phys. Rev. Lett. 111 175501), supporting the H-bonds symmetrization in iron oxyhydroxide, resulting from the Fe3+ high-to-low spin crossover at above 45 GPa. Our study shows an applicability of the x-ray absorption spectroscopy in a further study of the H-bonds symmetrization phenomenon.

α5ß1-Integrin promotes tension-dependent mammary epithelial cell invasion by engaging the fibronectin synergy site.

Tumors are fibrotic and characterized by abundant, remodeled, and cross-linked collagen that stiffens the extracellular matrix stroma. The stiffened collagenous stroma fosters malignant transformation of the tissue by increasing tumor cell tension to promote focal adhesion formation and potentiate growth factor receptor signaling through kinase. Importantly, collagen cross-linking requires fibronectin (FN). Fibrotic tumors contain abundant FN, and tumor cells frequently up-regulate the FN receptor α5ß1 integrin. Using transgenic and xenograft models and tunable two- and three-dimensional substrates, we show that FN-bound α5ß1 integrin promotes tension-dependent malignant transformation through engagement of the synergy site that enhances integrin adhesion force. We determined that ligation of the synergy site of FN permits tumor cells to engage a zyxin-stabilized, vinculin-linked scaffold that facilitates nucleation of phosphatidylinositol (3,4,5)-triphosphate at the plasma membrane to enhance phosphoinositide 3-kinase (PI3K)-dependent tumor cell invasion. The data explain why rigid collagen fibrils potentiate PI3K activation to promote malignancy and offer a perspective regarding the consistent up-regulation of α5ß1 integrin and FN in many tumors and their correlation with cancer aggression.

ICSH recommendations for the standardization of nomenclature and grading of peripheral blood cell morphological features.

These guidelines provide information on how to reliably and consistently report abnormal red blood cells, white blood cells and platelets using manual microscopy. Grading of abnormal cells, nomenclature and a brief description of the cells are provided. It is important that all countries in the world use consistent reporting of blood cells. An international group of morphology experts have decided on these guidelines using consensus opinion. For some red blood cell abnormalities, it was decided that parameters produced by the automated haematology analyser might be more accurate and less subjective than grading using microscopy or automated image analysis and laboratories might like to investigate this further. A link is provided to show examples of many of the cells discussed in this guideline.

[Scale invariance of biosystems: from embryo to community].

Abstract-Phenomena having the property of a scale invariance (that is, maintaining invariable structure in certain range of scales) are typical for biosystems of different levels. In this review, main manifestations of the scale-invariant phenomena at different levels of biological organization (including ontogenetic aspects) are stated, and the reasons of such wide distribution of fractal structures in biology are discussed. Almost all biological systems can be described in terms of synergetics as open nonequilibrium systems that exist due to substance and energy flow passing through them. The phenomenon of self-organization is typical for such dissipative systems; maintenance of energy flow requires the existence of complex structures that emerge spontaneously in the presence of the appropriate gradient. Critical systems, which form as a results of their activity scale-invariant structures (that are a kind of distribution channels), are optimal relative to the efficiency of substance and energy distribution. Thus, scale invariance of biological phenomena is a natural consequence of their dissipative nature.

[Multifractal analysis of the species structure of freshwater hydrobiocenoses].

The principles and methods of fractal analysis of the species structure of freshwater phytoplankton, zooplankton, and macrozoobenthos communities of plain water reservoirs and urban waterbodies are discussed. The theoretical foundation and experimental verification are provided for the authors' concept of self-similar (quasi-fractal) nature of the species structure of communities. According to this concept, the adequate mathematical image of species richness accumulation with growing sampling effort is quasi-monofractals, while the generalized geometric image of the species structure of the community is a multifractal spectrum.

Somatic p16(INK4a) loss accelerates melanomagenesis.

Loss of p16(INK4a)-RB and ARF-p53 tumor suppressor pathways, as well as activation of RAS-RAF signaling, is seen in a majority of human melanomas. Although heterozygous germline mutations of p16(INK4a) are associated with familial melanoma, most melanomas result from somatic genetic events: often p16(INK4a) loss and N-RAS or B-RAF mutational activation, with a minority possessing alternative genetic alterations such as activating mutations in K-RAS and/or p53 inactivation. To generate a murine model of melanoma featuring some of these somatic genetic events, we engineered a novel conditional p16(INK4a)-null allele and combined this allele with a melanocyte-specific, inducible CRE recombinase strain, a conditional p53-null allele and a loxP-stop-loxP activatable oncogenic K-Ras allele. We found potent synergy between melanocyte-specific activation of K-Ras and loss of p16(INK4a) and/or p53 in melanomagenesis. Mice harboring melanocyte-specific activated K-Ras and loss of p16(INK4a) and/or p53 developed invasive, unpigmented and nonmetastatic melanomas with short latency and high penetrance. In addition, the capacity of these somatic genetic events to rapidly induce melanomas in adult mice suggests that melanocytes remain susceptible to transformation throughout adulthood.

[Fractal aspects of the taxic diversity].

Two approaches are suggested for describing taxic diversity as a fractal, or self-similar, object. One of them called "sampling approach" is based on necessity of taking into account the sampling process and on proceeding from the real ecological practice of exploration of the community structure. Verification of this approach is fulfilled using a multifractal analysis of the generic diversity of vascular plants of the National Park "Samarskaya Luka". The previously revealed regularities of multifractal spectrum of the species structure of communities are shown to be true to an extent for the generic structure, as well. The second approach called "topological" one is based on an abstract representation of the results of evolutionary process in form of phylogenetic tree characterized by a non-trivial topological structure. Approbations of this approach is fulfilled by analysis of topological structure of the taxonomic tree of the class Mammalia, our calculations indicating fractal properties of its graph. These results make it reasonable to suppose that the taxic diversity, as a replica of the real diversity of the fractally organized organic world, also possesses self-similar (fractal) structure.

Pressure-induced insulator-to-metal transition in TbBaCo_{2}O_{5.48}.

TbBaCo_{2}O_{5.48} has been studied by high-pressure synchrotron x-ray diffraction together with resistivity measurements as a function of temperature and pressure. It was found that under pressure a structural phase transition takes place corroborating with a sluggish insulator-to-metal transition. An onset of the metallic state was deduced from a gradual drop of resistivity at the range 3-10 GPa culminating into the change in sign of dR/dT, from negative to positive, at P >or= 10 GPa; at the same pressure range there is a change of lattice strain components calculated from the unit cell dimensions. The changes in structural and transport properties are very similar to those found on heating at ambient pressure implying a common mechanism.

[Power-law species richness accumulation as manifestation of the fractal community structure].

Applications of the fractal to describing the species structure of communities are discussed. Fundamental notions of fractal geometry are explained in the first part. The problem of applying the concept of fractal to describe the spatial allocation of particular species and of community as a whole is reviewed in the second part. In the final part, the usage of the selfsimirity principle for analyzing community organization is substantiated, and evidence of the fractal structure of biocenoses is presented according to Whittaker's concept of alpha diversity. It is shown that community is characterized, as a fractal object, by scale invariance, by power function relationship between the number of structural elements of the community (individuals, populations, species) and the scale (sampling effort), and, finally, by fractional value of the power (fractal dimension). Power function is the formula the takes into account the share of rare species, or species represented by a single individual. providing for no saturation of the function f(x). This formula also does not contradict the A.P. Levich's "rule of ecological non-additivity" and, lastly, allows the application of fractal formalism to characterize the species structure of a community. It is concluded that the mathematical image of species richness is a monofractal, i.e., a set characterised by only one parameter, fractal dimension. Thus, the species structure of a community (as well as the pattern of its spatial allocation) displays self-similarity and is a fractal.

A model for the origin of internal eliminated segments (IESs) and gene rearrangement in stichotrichous ciliates.

A characteristic feature of ciliates (ciliated protozoans) is their nuclear dimorphism: the presence of two kinds of functionally different nuclei in the same cell--a micronucleus (MIC) and the macronucleus (MAC). In the stichotrichous group of ciliates the organization of DNA in the MIC is dramatically different from that in the MAC. Genes in the MIC consist of the sequence of segments, called MDSs, which are separated by short noncoding pieces of DNA, called IESs. Moreover, the order of MDSs in the MIC may be scrambled compared to their order in the MAC, and also some MDSs may be inverted with respect to each other. In this paper, we consider the evolutionary origin of this bizarre form of MIC genes, and in particular we postulate that the insertion of IESs as well as possible scramblings/inversions have resulted from a repair of one or more breaks in a DNA molecule. We propose a specific repair scheme, and postulate that this repair scheme applied to a coiled structure of a DNA molecule that has undergone multiple breaks can produce IES insertions and/or scrambled/inverted MIC gene patterns. All experimentally demonstrated as well as theoretical MIC gene patterns can be produced in this way.

Origin of the Verwey transition in magnetite.

Comprehensive x-ray powder diffraction studies were carried out in magnetite in the 80-150 K and 0-12 GPa ranges with a membrane-driven diamond anvil cell and helium as a pressure medium. Careful data analyses have shown that a reversible, cubic to a distorted-cubic, structural transition takes place with increasing pressure, within the (P,T) regime below the Verwey temperature TV(P). The experimental documentation that TV(P)=Tdist(P) implies that the pressure-temperature-driven metal-insulator Verwey transition is caused by a gap opening in the electronic band structure due to the crystal-structural transformation to a lower-symmetry phase. The distorted-cubic insulating phase comprises a relatively small pressure-temperature range of the stability field of the cubic metallic phase that extends to 25 GPa.

Pressure induced self-oxidation of Fe(OH)2.

Mössbauer spectroscopy, x-ray diffraction, and electrical resistance [R(P,T)] studies in Fe(OH)(2) to 40 GPa revealed an unforeseen process by which a gradual Fe2+ oxidation takes place, starting at approximately 8 GPa reaching 70% Fe3+ abundance at 40 GPa. The nonreversible process Fe2+-->Fe3++e(-) occurs with no structural transition. The "ejected" electrons form a deep band within the high-pressure electronic manifold becoming weakly localized at P>50 GPa. This process is attributed to an effective ionization potential created by the pressure induced orientationally deformed (OH) dipoles and the unusual small binding energy of the valence electron in Fe2+(OH)(2).