Adaptive capability of slow-growing backyard poultry as indicated by physiological and molecular responses in a hot and humid coastal climate.

Assessing the adaptability of slow-growing rural chickens for improving thermotolerance to suit the global climate change is a major research need. This work was aimed to evaluate the adaptability of CARI-Debendra chickens and to identify the polymorphism as well as expression profiling of thermotolerant genes (HSP70 and GRP78) under prevailing temperature-humidity indices and thermal stress in a coastal environment. One hundred sixty straight run chicks were reared at THI≥75 (control) and THI>80 under coastal climate till 12 weeks. Polymorphism of HSP70 and GRP78 candidate genes were explored using restriction enzymes TaqI and HaeIII to identify possible thermotolerance markers. Expression profiling of both the genes in liver, intestine and pectoralis muscle was determined through quantitative real-time PCR. Rectal and body surface temperature recorded in the neck and back showed significant differences (P < 0.01) with higher temperature in THI>80 group. Comparatively lower live weights (P < 0.05) and poor FCR were recorded in THI>80 group. The villi height in all intestinal segments was significantly lower (P < 0.01), but deeper crypt depth was observed in THI>80 than control group. A lowest thymus weight (P < 0.05) was noted with no significant differences in immune response in treatment group. Serum levels of cholesterol, activities of lactate dehydrogenase, creatinine kinase and concentration of potassium, sodium and thyroxine hormone were not different between the 2 groups. The concentration of triiodothyronine and chloride ion was lower in THI>80 group indicating adaptive changes for thermoregulation. HSP70 gene expressions in the three tissues were differentially increased (P < 0.01) by temperature-humidity indices, but the expression of GRP78 was not different between the 2 groups. The results concluded that the environmental factors interact with genetics on adaptability towards thermotolerance in slow-growing chickens.

Assessment of diagnostic accuracy and effectiveness of trans-abdominal real-time ultrasound imaging for pregnancy diagnosis in breeding sows under intensive management.

Early and accurate determination of pregnancy is critical to optimum reproductive performance in pigs and enables farmers to early rebreed or cull non-pregnant animals. Most of the conventional diagnostic methods are unsuitable for systematic application under practical conditions. The advent of real-time ultrasonography has made it possible to establish relatively more reliable pregnancy diagnosis. The present study was carried out to evaluate the diagnostic accuracy and effectiveness of trans-abdominal real-time ultrasound (RTU) imaging vis-à-vis pregnancy status in sows reared under intensive management. Trans-abdominal ultrasonographic examinations were performed using a mechanical sector array transducer and portable ultrasound system in crossbred sows from 20 days post-insemination for up to next 40 days. Animals were followed up for subsequent reproductive performance with farrowing data used as the definitive test for deriving predictive values. Accuracy for diagnosis was determined by diagnostic accuracy measures like sensitivity, specificity, predictive values, and likelihood ratios. Before 30 days of breeding, RTU imaging had 84.21% sensitivity and 75% specificity. Relatively higher false diagnosis rates were obtained in animals checked at or before 55 days after AI than in animals checked after 55 days (21.73% versus 9.09%). Negative pregnancy rate was low with 29.16% (7/24) false positives. Overall sensitivity and specificity, using farrowing history as the gold standard, were 94.74% and 70.83% respectively. The sensitivity of testing tended to be slightly lower in sows with litter size of less than 8 total born piglets, compared to sows with 8 or more piglets. Overall positive likelihood ratio was 3.25 while negative likelihood ratio was 0.07. The results indicate that pregnancy in swine herds can be reliably detected earlier in gestation by 30 days post-insemination using trans-abdominal RTU imaging. This non-invasive technique with portable imaging system can be used as an integral part of reproductive monitoring and sound management practices for profitable swine production systems.

Impact of bioclimatic factors on physio-biochemical and molecular response of slow-growing poultry reared in tropics.

Most of the climatic studies projected on heat stress have considered heat extremes, but not the humidity. Hence, this work was carried out to evaluate thermotolerance, production performance, physio-biochemical and immunological response of slow-growing poultry towards various temperature-humidity levels in coastal climate. A total of 240 straight run CARI-Debendra birds were reared in three groups based on temperature-humidity indices (THI > 80, = 75-80 and < 75). Significant difference (P < 0.01) in rectal and body surface temperatures was observed among treatment groups. Lowest body weight was observed in THI > 80 group as 1.45 kg at 12 weeks. There was no significant difference in feed intake and FCR; however, total water intake had increased in heat-stressed group. Birds under THI > 80 group had significantly low gizzard weight only at the 12th week compared to other groups. Significant differences (P < 0.05) in relative weight and length of intestine were noticed which was comparable between seasonal control and THI > 80 group but lower than THI < 75 group at the 6th week. However, at the 12th week, intestinal weight varied among the groups (P = 0.08), but intestinal size did not differ. Among immune organs, significant difference (P < 0.05) was noted only in weight of thymus. Except Cl-, other biochemical indices such as cholesterol, lactate dehydrogenase, creatinine kinase, K+ and Na+ did not differ among treatment groups. Relative expression of HSP70 gene was differed significantly (P < 0.01) in the liver, intestine and breast muscles under different THI. The changes reported in seasonal control group during month of October to December revealed better thermotolerance capacity and adaptability of CARI-Debendra birds to coastal hot-humid climate. However, response of this breed to heat stress (THI > 80) reported decrease in growth, immune response and mineral balance attributable to heat loss efficacy in high humidity.

Genetic evaluation of growth and reproductive performances of crossbred pigs reared under intensive system in tropical humid coastal climate.

Pig farming is one of the most economically viable options for the rural backward and resource-poor farmers in Asian countries. Growth rate and litter size are the most important traits based on which the crossbreeding programs are typically planned in commercial pig farming. The modern system of farming with high yielding improved pig germplasm helps in economic growth in piggery enterprises. The present study was undertaken to evaluate the influence of various genetic and non-genetic factors on growth and reproductive performances of 75% crossbred progenies of Large White Yorkshire and indigenous Agonda Goan pigs. Body weights were recorded at birth, weaning, and at monthly intervals up to 10 months of age. Reproductive performances were also recorded for litter size and weights at birth and weaning stages, age at first farrowing, number of services per conception, farrowing interval, and pre-weaning mortality. The general linear model was used to estimate overall least square means of body weights at different ages considering the effects of different factors at certain levels viz., generation (i = first, second, third, fourth), sex (j = male, female), litter size at birth (k = 1-3, 4-6, 7-9, ≥10), parity (l = 1, 2, ≥3), season (m = summer, rainy, spring), and period of birth (n = 2012-2015, 2016-2019). The heritability and genetic correlations for different traits were estimated by restricted maximum likelihood (REML) method using WOMBAT software. The re(production) parameters were analyzed to assess the genetic improvement in successive generations. There was significant difference (p < 0.01) in body weights among different generations where animals belonging to latest generation showed maximum body weights indicating ideal selective breeding in the herd. Other fixed effects also had significant effects on growth performance which clearly signifies to the crucial influence of rearing environment and animal factors like parity of dams as well as litter size at birth. The overall birth weight, weaning weight, and weight at 10 months of age were 1.00 ± 0.01 kg, 7.57 ± 0.07 kg, and 81.58 ± 1.96 kg, respectively. Nevertheless, weaning weight and weight at marketing age (8 months) were 8.04 ± 0.27 kg and 75.48 ± 1.40 kg, respectively, in fourth generation, indicating higher post-weaning growth rate of 337.20 g/day. During this fourth generation, mean litter size at birth was 8.35 ± 0.43 and litter size at weaning was 7.79 ± 0.39 with lowest percentage of pre-weaning mortality (4.11 ± 1.51). The average age at first farrowing and farrowing interval was 293 ± 17.24 and 195 ± 4.78 days, respectively. There was apparently greater genetic gain in each generation except for the second generation which might be due to the environment and managemental issues that hindered reproductive performance traits and body growth. The heritability estimate for weaning weight was 0.45 and higher heritability values were observed for all the body weights except weight at third month. Genetic as well as phenotypic correlations were moderate to high among the growth traits. The heritability and genetic correlations at birth and weaning indicate the reliability of selection at an early age. The findings indicated that there is scope for improvement through genetic selection in later generations and the 75% crossbred pigs thrived well in the prevailing hot and humid tropical coastal climate. The improved germplasm could satisfy the farmers' need in a commercial venture with high economic return.

Novel report on mutation in exon 3 of myostatin (MSTN) gene in Nilagiri sheep: an endangered breed of South India.

The variability in breeding program leads to rapid loss of genetic potential for which National Bureau of Animal Genetic Resources is emphasized to conserve the indigenous breeds. The variation in myostatin (MSTN) gene and its association with growth traits will throw light on its potential use as marker in selection. Hence, the study was conducted to detect polymorphism in exon 3 of MSTN, one of the most important growth regulatory gene and its association with growth in Nilagiri sheep breed. Blood samples were collected from Nilagiri sheep (n = 103) of South India and growth data up to 1 year of age was recorded. Genomic DNA was isolated and amplified for part of MSTN gene; PCR products were genotyped by restriction digestion (MspI) and confirmed by sequencing. Restriction digestion has revealed a single nucleotide polymorphism at locus G5622C in exon 3 which was confirmed by sequencing. The wild-type DNA molecule (MM) cleaved by MspI produced 301-bp and 314-bp fragments and those with mutation (mm) would remain undigested. The genotypic frequencies were MM (0.689) and Mm (0.311) with complete absence of mm genotype; and allelic frequencies were M (0.8445) and m (0.1555). The locus was in Hardy-Weinberg equilibrium. The association analysis revealed that there was no significant difference in mean birth, weaning, 6-, 9-, and 12-month weight between MM and Mm genotypes at g.5622G>C locus of exon 3 of MSTN gene. This is the first report of mutation in exon 3 of MSTN gene. The non-significant effect and absence of mm genotype at this locus needs further studies based on large population size and haplotype analysis.

Polymorphism of growth hormone receptor (GHR) gene in Nilagiri sheep.

The allelic variation in the regulatory sequence of growth hormone receptor (GHR) gene influences the growth traits of sheep. A study was carried out to find out the polymorphisms associated with exon 10 of GHR gene and its association with growth traits of Nilagiri sheep. The blood samples were collected from Nilagiri sheep (n = 103) reared at Sheep Breeding Research Station, Sandynallah, Tamil Nadu, India. DNA was isolated using the phenol-chloroform extraction procedure and eight samples having amplified product of part of exon 10 (895 bp) sequenced. The results indicated transitions of nucleotide G>A at loci G177624A and G177878A. The genotyping frequencies estimated using the tetra-primer amplification refractory mutation system-PCR for GG, GA and AA were 0.262, 0.544 and 0.194, and 0.349, 0.505 and 0.146, respectively. The estimated allele frequencies of G and A nucleotides were 0.5340 and 0.4660, and 0.6015 and 0.3985, respectively, at loci G177624A and G177878A. The effects of both the mutations on growth-related traits viz., birth, weaning (3 months) 6, 9 and 12 months weight in Nilagiri sheep were found to be non-significant. This can be a novel approach to assess growth of sheep using the mutation in GHR gene. Thus, this approach can be useful for further investigation as a molecular marker associated with genetic improvement.