Variation for host range within and among populations of the parasitic plant Striga hermonthica.

Striga hermonthica is an angiosperm parasite that causes substantial damage to a wide variety of cereal crop species, and to the livelihoods of subsistence farmers in sub-Saharan Africa. The broad host range of this parasite makes it a fascinating model for the study of host-parasite interactions, and suggests that effective long-term control strategies for the parasite will require an understanding of the potential for host range adaptation in parasite populations. We used a controlled experiment to test the extent to which the success or failure of S. hermonthica parasites to develop on a particular host cultivar (host resistance/compatibility) depends upon the identity of interacting host genotypes and parasite populations. We also tested the hypothesis that there is a genetic component to host range within individual S. hermonthica populations, using three rice cultivars with known, contrasting abilities to resist infection. The developmental success of S. hermonthica parasites growing on different rice-host cultivars (genotypes) depended significantly on a parasite population by host-genotype interaction. Genetic analysis using amplified fragment length polymorphism (AFLP) markers revealed that a small subset of AFLP markers showed 'outlier' genetic differentiation among sub-populations of S. hermonthica attached to different host cultivars. We suggest that, this indicates a genetic component to host range within populations of S. hermonthica, and that a detailed understanding of the genomic loci involved will be crucial in understanding host-parasite specificity and in breeding crop cultivars with broad spectrum resistance to S. hermonthica.

Global patterns of gene expression in rice cultivars undergoing a susceptible or resistant interaction with the parasitic plant Striga hermonthica.

Striga hermonthica is a root hemiparasite of cereals that causes devastating loss of yield. Recently, a rice cultivar, Nipponbare, was discovered, which exhibits post-attachment resistance to this parasite and quantitative trait loci (QTL) associated with the resistance were identified. Changes in gene expression in susceptible (IAC 165) and resistant (Nipponbare) rice cultivars were profiled using rice whole-genome microarrays. In addition to a functional categorization of changes in gene expression, genes that were significantly up-regulated within resistance QTL were identified. The resistance reaction was characterized by up-regulation of defence genes, including pathogenesis-related proteins, pleiotropic drug resistance ABC transporters, genes involved in phenylpropanoid metabolism and WRKY transcription factors. These changes in gene expression resemble those associated with resistance to microbial pathogens. Three genes encoding proteins of unknown function, within a major resistance QTL on chromosome 12, were highly up-regulated and are excellent candidate resistance genes. The susceptible interaction was characterized by large-scale down-regulation of gene expression, particularly within the functional categories plant growth regulator signalling and metabolism, biogenesis of cellular components and cell division. Up-regulated genes included nutrient transporters, enzymes of amino acid metabolism and some abiotic stress genes.

A novel form of resistance in rice to the angiosperm parasite Striga hermonthica.

The root hemiparasitic weed Striga hermonthica is a serious constraint to grain production of economically important cereals in sub-Saharan Africa. Breeding for parasite resistance in cereals is widely recognized as the most sustainable form of long-term control; however, advances have been limited owing to a lack of cereal germplasm demonstrating postattachment resistance to Striga. Here, we identify a cultivar of rice (Nipponbare) that exhibits strong postattachment resistance to S. hermonthica; the parasite penetrates the host root cortex but does not form parasite-host xylem-xylem connections. In order to identify the genomic regions contributing to this resistance, a mapping population of backcross inbred lines between the resistant (Nipponbare) and susceptible (Kasalath) parents were evaluated for resistance to S. hermonthica. Composite interval mapping located seven putative quantitative trait loci (QTL) explaining 31% of the overall phenotypic variance; a second, independent, screen confirmed four of these QTL. Relative to the parental lines, allelic substitutions at these QTL altered the phenotype by at least 0.5 of a phenotypic standard deviation. Thus, they should be regarded as major genes and are likely to be useful in breeding programmes to enhance host resistance.

Wheat (Triticum aestivum) Is Susceptible to the Parasitic Angiosperm Striga hermonthica, a Major Cereal Pathogen in Africa.

ABSTRACT Striga hermonthica is a parasitic weed endemic to sub-Saharan Africa. It most commonly parasitizes sorghum, maize, pearl millet, and upland rice, lowering yields and affecting the welfare of over 100 million people, principally subsistence farmers. Cereal crops with complete resistance to this pathogen have not been reported. In southern and eastern Africa, where Striga spp. are endemic, 5.6 million ha of wheat are cultivated annually. Despite this, there are only isolated field reports of wheat infected with Striga spp. It is not clear whether this is due to resistance in this cereal or to environmental factors. In this article, we examined the ability of root exudates from five cultivars of wheat (Chablis, Cadenza, Hereward, Riband, and Brigadier) to trigger germination of S. hermonthica seed. A study of the development of S. hermonthica on two cultivars of wheat (Hereward and Chablis) and on a range of ancestral relatives of wheat (Triticum and Aegilops spp.) then was conducted. Last, the effect of Striga spp. on host growth and yield was examined using wheat cv. Chablis and compared with that of a highly susceptible sorghum cultivar (CSH-1). Wheat was able to support the germination, attachment, and subsequent development of Striga spp. All wheat cultivars and ancestral species of modern wheat (Triticum and Aegilops spp.) were susceptible to S. hermonthica. In addition, in wheat, infection severely lowered plant height (-24%) and biomass accumulation (-33%); a small parasite biomass elicited a large host response. In conclusion, wheat is highly susceptible to S. hermonthica and, in light of global climate change, this may have implications for wheat-producing areas of Africa.

Physiological and ecological significance of sunflecks for dipterocarp seedlings.

Irradiance is highly dynamic in many plant canopies. Photosynthesis during sunflecks provides 10-90% of daily carbon gain. The survivorship of tree seedlings in the deeply shaded understorey of tropical rain forests is limited by their ability to maintain a positive carbon balance. Dipterocarp seedlings from the SE Asian rain forest were used as a model system to test novel aspects of the physiological and ecological significance of sunflecks. First, understorey seedlings experienced leaf temperatures up to 38 degrees C in association with sunflecks. Under controlled environment conditions, the inhibition of carbon gain at 38 degrees C, compared with 28 degrees C, was significantly greater during a sequence of sunflecks (-59%), than under uniform irradiance (-40%), providing the same total photosynthetic photon flux density (PPFD). Second, the relative enhancement effects of elevated [CO2] were greater under sunflecks (growth +60%, carbon gain +89%), compared with uniform irradiance (growth +25%, carbon gain +59%), supplying the same daily PPFD. Third, seedling growth rates in the forest understorey were 4-fold greater under a dynamic irradiance treatment characterized by long flecks, compared with a regime of short flecks. Therefore, stresses associated with dynamic irradiance may constrain photosynthetic carbon gain. Additionally, seedling photosynthesis and growth may be more responsive to interactions with abiotic factors, including future changes in climate, than previously estimated. The sensitivity of seedling growth to varying patterns of dynamic irradiance, and the increased likelihood of species-specific responses through interactions with environmental factors, indicates the potential for sunflecks to influence regeneration processes, and hence forest structure and composition.

Patterns of dynamic irradiance affect the photosynthetic capacity and growth of dipterocarp tree seedlings.

In the deeply shaded understorey of S.E. Asian rain forests the growth and survival of dipterocarp seedlings is limited by their ability to maintain a positive carbon balance. Photosynthesis during sunflecks is an important component of carbon gain in understorey plants. To test the sensitivity of photosynthesis and growth to variation in the pattern of dynamic irradiance, dipterocarp tree seedlings (Shorea leprosula and Hopea nervosa) were grown for 370 days under shaded forest light treatments of equal total daily photosynthetic photon flux density (approximately 3.3 mol m(-2) day(-1)), but characterised by either long flecks (LF) or short flecks (SF). Seedling growth was more than 4-fold greater under LF, compared with SF, in both species. Variation in the relative growth rates (RGR) and light saturated rates of photosynthesis (A(max)) were strongly positively correlated with the mean duration of sunflecks. Variation in RGR was strongly correlated with greater unit leaf rate growth, indicating that photosynthetic carbon gain per unit leaf area was greater under LF. The accumulation of starch in leaves over the diurnal period was 117% greater in both species under LF, compared with SF. Greater carbon gain in seedlings under LF is likely to have resulted from the combination of (1) greater A(max) (S. leprosula 35%, H. nervosa 40%), (2) more efficient dynamic photosynthesis, and (3) greater incident photosynthetic quantum yield, compared with seedlings receiving the SF irradiance treatment. The pattern of dynamic irradiance received by seedlings may significantly impact their growth and survival to a previously unrecognised extent, with important consequences for regeneration processes and hence forest structure and composition.

Novel sources of resistance to Striga hermonthica in Tripsacum dactyloides, a wild relative of maize.

• The parasitic weed Striga hermonthica lowers cereal yield in small-holder farms in Africa. Complete resistance in maize to S. hermonthica infection has not been identified. A valuable source of resistance to S. hermonthica may lie in the genetic potential of wild germplasm. • The susceptibility of a wild relative of maize, Tripsacum dactyloides and a Zea mays-T. dactyloides hybrid to S. hermonthica infection was determined. Striga hermonthica development was arrested after attachment to T. dactyloides. Vascular continuity was established between parasite and host but there was poor primary haustorial tissue differentiation on T. dactyloides compared with Z. mays. Partial resistance was inherited in the hybrid. • Striga hermonthica attached to Z. mays was manipulated such that different secondary haustoria could attach to different hosts. Secondary haustoria formation was inhibited on T. dactyloides, moreover, subsequent haustoria formation on Z. mays was also impaired. • Results suggest that T. dactyloides produces a signal that inhibits haustorial development: this signal may be mobile within the parasite haustorial root system.

Infection of Arabidopsis thaliana leaves with Albugo candida (white blister rust) causes a reprogramming of host metabolism.

Abstract Albugo candida (Pers.) (O.) Kunze is a biotrophic pathogen which infects the crucifer Arabidopsis thaliana (L.) Heynh forming discrete areas of infection. Eight days after inoculation of leaves, white blisters became visible on the under surface of the leaf although no symptoms were apparent on the upper surface. By day 14, the region of leaf invaded by fungal mycelium had become chlorotic. Recently it has been hypothesized that an accumulation of soluble carbohydrates, following an increase in invertase activity, may trigger sugar signal transduction pathways leading to the repression of photosynthetic gene expression and to the induction of defence proteins. This hypothesis was investigated by quantifying localized changes in carbohydrate and photosynthetic metabolism and the expression of genes encoding photosynthetic and defence proteins. Quantitative imaging of chlorophyll fluorescence revealed that the rate of photosynthesis declined progressively in the invaded regions of the leaf. However, in uninfected regions of the infected leaf the rate of photosynthesis was similar to that measured in the control leaf until late on during the infection cycle when it declined. Images of nonphotochemical fluorescence quenching (NPQ) suggested that the capacity of the Calvin cycle had been reduced in infected regions and that there was a complex metabolic heterogeneity within the infected leaf. A. candida also caused localized changes in the carbohydrate metabolism of the leaf; soluble carbohydrates accumulated in the infected region whereas the amount of starch declined. The reverse was seen in uninfected regions of the infected leaf; carbohydrates did not accumulate until late on during infection and the amount of starch increased as the infection progressed. There was an increase in the activity of invertases which was confined to regions of the leaf invaded by the fungal mycelium. The increase in apoplastic invertase activity was of host origin, as mRNA levels of the ATbetaFRUCT1 gene (measured by semiquantitative RT-PCR) increased 40-fold in the infected region. The increase in soluble invertase activity resulted from the appearance of a new isoform in the invaded region of the leaf. Current evidence suggests that this was of fungal origin. Northern blot analysis of cab and rbcS showed that photosynthetic gene expression was repressed in the infected leaf from 6 days after inoculation (DAI) when compared to control leaves. In contrast, there was no detectable induction of defence proteins in the infected leaf. These data are discussed in the context of the sugar-sensing hypothesis presented above.

Unusual carotenoid composition and a new type of xanthophyll cycle in plants.

The capture of photons by the photosynthetic apparatus is the first step in photosynthesis in all autotrophic higher plants. This light capture is dominated by pigment-containing proteins known as light-harvesting complexes (LHCs). The xanthophyll-carotenoid complement of these LHCs (neoxanthin, violaxanthin, and lutein) is highly conserved, with no deletions and few, uncommon additions. We report that neoxanthin, considered an integral component of LHCs, is stoichiometrically replaced by lutein-5,6-epoxide in the parasitic angiosperm Cuscuta reflexa, without compromising the structural integrity of the LHCs. Lutein-5,6-epoxide differs from neoxanthin in that it is involved in a light-driven deepoxidation cycle similar to the deepoxidation of violaxanthin in the xanthophyll cycle, which is implicated in protection against photodamage. The absence of neoxanthin and its replacement by lutein-5,6-epoxide changes our understanding of the structure-function relationship in LHCs, has implications for biosynthetic pathways involving neoxanthin (such as the plant hormone abscisic acid), and identifies one of the early steps associated with the evolution of heterotrophy from autotrophy in plants.

Infection time and density influence the response of sorghum to the parasitic angiosperm Striga hermonthica.

Two cultivars of sorghum (CSH-1 and Ochuti) were grown in the presence and absence of the root hemiparasite Striga hermonthica in uniform conditions in the field in Kenya, Africa. S. hermonthica had a marked influence on growth and photosynthesis of 'CSH-1'; however, 'Ochuti' showed a less severe response to infection and tolerance of the parasite. The variation in genotype response might be partly explained by later attachment of the parasite and a lower level of infection. Laboratory studies were used to determine the importance of both variables in determining host response to infection. Early infection by S. hermonthica had a more negative effect on the host than late infection. The level of parasite biomass supported by the host also influenced host productivity but the relationship was nonlinear. Low degrees of parasite infection had a proportionately much greater effect on host grain weight than at greater parasite loading. Early infection of 'Ochuti' in laboratory conditions resulted in lower stem dry weight than in uninfected plants but not in smaller total plant biomass or lower rates of photosynthesis. In conclusion, the time of parasite attachment affected host performance and might explain much of the variation in host sensitivity both within and between studies. The level of parasite infection affected host performance to a lesser extent. In addition, late attachment and low levels of infection might have implications for control management strategies.

Purification and characterisation of soluble invertases from leaves of Arabidopsis thaliana.

Multiple isoforms of beta-fructofuranosidase (invertase, EC 3.2.1.26) were identified in mature green leaves of the cruciferous plant Arabidopsis thaliana (L.) Heynh. There were four major and one minor isoforms of soluble acid invertase and an additional activity which could be released from the cell wall by buffers of high ionic strength. This study reports the separation and characterisation of three soluble isoforms following ammonium sulphate and polyethylene glycol 6000 precipitations, Concanavalin A, MonoQ ion exchange, Superose 12 size-exclusion chromatography and chromatofocusing. These isoforms, designated INV1, INV2 and INV3, had isoelectric points of 4.75, 4.70 and 4.65 and a Km for sucrose of 5, 12 and 5 mM, respectively. Each had a pH optimum of 5.5, exhibited optimal activity at 45 degrees C and used sucrose as the preferred substrate. All fractions containing these isoforms contained a 52-kDa polypeptide which was specifically detected by immunoblotting with an antibody raised against deglycosylated wheat invertase. The N-terminal amino-acid sequence of this polypeptide was homologous to acid invertases isolated from other plant species. The possible origin of isoforms of soluble acid invertase is discussed.

Differences in light energy utilisation and dissipation between dipterocarp rain forest tree seedlings.

The light environment within tropical rain forests varies considerably both spatially and temporally, and photon flux density (PFD) is considered to be an important factor determining the growth and survival of rain forest tree seedlings. In this paper we examine the ability of four ecologically contrasting dipterocarps (Dryobalanops lanceolata, Shorea leprosula, Hopea nervosa and Vatica oblongifolia) to utilise and dissipate light energy when grown in different light environments in lowland dipterocarp rain forest in the Danum Valley Conservation Area, Sabah, East Malaysia. Specifically we report (i) photosynthetic light response curves and associated fluorescence characteristics, including quantum yield (ΦPSII) and non-photochemical quenching (qN) and (ii) the extent to which photoinhibition occurs when plants grown in either high or low light are exposed to short bursts of high PFD. When grown in low light (artificial or forest shade) all four species had low light saturated rates of photosynthesis which were achieved at low PFDs. In addition, values of ΦPSII and qN were similar over a range of measurement PFDs. D. lanceolata and S. leprosula were also grown at high PFD and showed marked differences in their responses. S. leprosula demonstrated an ability to increase its rate of photosynthesis and there was a small increase in capacity to dissipate excess light energy non-photochemically at high PFDs. Partitioning of this qN into its fast, photo-protective (qE) and slow, photoinhibitory (qI) components indicated that there was an increase in qE quenching. In contrast, although D. lanceolata survived in the high light environment, greater rates of photosynthesis were not observed and the plants showed a greater capacity to dissipate energy non-photochemically. Partitioning of qN revealed that the majority of this increase was attributable to the slower relaxing phases.

INCREASED RATES OF PHOTOSYNTHESIS IN LOCALIZED REGIONS OF A BARLEY LEAF INFECTED WITH BROWN RUST.

The rate of photosynthesis was examined in whole leaves of barley infected with brown rust (Puccinia hordei Otth.) and within localized regions of the infected leaf, within brown rust pustules and in regions between them, from flecking to green island formation. In addition, oxygen evolution was measured from localized regions of a rusted leaf after feeding with inorganic phosphate (Pi) to investigate the hypothesis that fungal sequestration of Pi from the host cytoplasm may, totally or partially, be responsible for the decline in photosynthesis. The rate of net photosynthesis and the quantum yield of oxygen evolution declined in whole infected leaves as the disease progressed. However, the rate of gross photosynthesis (per unit chlorophyll) was increased in rusted leaves. Autoradiographic and oxygen evolution studies showed that the decline in net photosynthesis could be attributed largely to a reduction in the rate of photosynthesis in the regions between pustules. Within areas of the leaf invaded by the fungus, gross photosynthesis was increased in comparison to control tissue. Feeding leaf tissue with Pi did not significantly increase the rate of photosynthesis in pustules or regions between pustules, implying that Pi was not previously limiting the rate of photosynthesis. Possible mechanisms underlying the increase and decrease in photosynthesis in different regions of an infected leaf are discussed.