RESUMEN
The complete genome sequence of Geobacter sulfurreducens, a delta-proteobacterium, reveals unsuspected capabilities, including evidence of aerobic metabolism, one-carbon and complex carbon metabolism, motility, and chemotactic behavior. These characteristics, coupled with the possession of many two-component sensors and many c-type cytochromes, reveal an ability to create alternative, redundant, electron transport networks and offer insights into the process of metal ion reduction in subsurface environments. As well as playing roles in the global cycling of metals and carbon, this organism clearly has the potential for use in bioremediation of radioactive metals and in the generation of electricity.
Asunto(s)
Genoma Bacteriano , Geobacter/genética , Geobacter/metabolismo , Metales/metabolismo , Acetatos/metabolismo , Acetilcoenzima A/metabolismo , Aerobiosis , Anaerobiosis , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Carbono/metabolismo , Quimiotaxis , Cromosomas Bacterianos/genética , Citocromos c/genética , Citocromos c/metabolismo , Transporte de Electrón , Metabolismo Energético , Genes Bacterianos , Genes Reguladores , Geobacter/fisiología , Hidrógeno/metabolismo , Movimiento , Sistemas de Lectura Abierta , Oxidación-Reducción , FilogeniaRESUMEN
Approximately 80% of the maize genome comprises highly repetitive sequences interspersed with single-copy, gene-rich sequences, and standard genome sequencing strategies are not readily adaptable to this type of genome. Methodologies that enrich for genic sequences might more rapidly generate useful results from complex genomes. Equivalent numbers of clones from maize selected by techniques called methylation filtering and High C0t selection were sequenced to generate approximately 200,000 reads (approximately 132 megabases), which were assembled into contigs. Combination of the two techniques resulted in a sixfold reduction in the effective genome size and a fourfold increase in the gene identification rate in comparison to a nonenriched library.
Asunto(s)
Genes de Plantas , Genoma de Planta , Análisis de Secuencia de ADN/métodos , Zea mays/genética , Cromosomas de las Plantas/genética , Clonación Molecular , Biología Computacional , Mapeo Contig , Metilación de ADN , ADN de Plantas/genética , Bases de Datos de Ácidos Nucleicos , Etiquetas de Secuencia Expresada , Dosificación de Gen , Biblioteca de Genes , Datos de Secuencia Molecular , Secuencias Repetitivas de Ácidos Nucleicos , Retroelementos , Alineación de Secuencia , Transcripción GenéticaRESUMEN
The complete genome sequence of Enterococcus faecalis V583, a vancomycin-resistant clinical isolate, revealed that more than a quarter of the genome consists of probable mobile or foreign DNA. One of the predicted mobile elements is a previously unknown vanB vancomycin-resistance conjugative transposon. Three plasmids were identified, including two pheromone-sensing conjugative plasmids, one encoding a previously undescribed pheromone inhibitor. The apparent propensity for the incorporation of mobile elements probably contributed to the rapid acquisition and dissemination of drug resistance in the enterococci.
Asunto(s)
Evolución Biológica , Enterococcus faecalis/genética , Genoma Bacteriano , Secuencias Repetitivas Esparcidas , Análisis de Secuencia de ADN , Resistencia a la Vancomicina/genética , Adhesinas Bacterianas/genética , Adhesión Bacteriana , Proteínas Bacterianas/genética , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Cromosomas Bacterianos/genética , Conjugación Genética , Secuencia Conservada , Elementos Transponibles de ADN , Sistema Digestivo/microbiología , Farmacorresistencia Bacteriana Múltiple , Enterococcus faecalis/efectos de los fármacos , Enterococcus faecalis/patogenicidad , Enterococcus faecalis/fisiología , Transferencia de Gen Horizontal , Infecciones por Bacterias Grampositivas/microbiología , Humanos , Lisogenia , Sistemas de Lectura Abierta , Estrés Oxidativo , Plásmidos , Sintenía , Virulencia/genética , Factores de Virulencia/genéticaRESUMEN
Virulence and immunity are poorly understood in Mycobacterium tuberculosis. We sequenced the complete genome of the M. tuberculosis clinical strain CDC1551 and performed a whole-genome comparison with the laboratory strain H37Rv in order to identify polymorphic sequences with potential relevance to disease pathogenesis, immunity, and evolution. We found large-sequence and single-nucleotide polymorphisms in numerous genes. Polymorphic loci included a phospholipase C, a membrane lipoprotein, members of an adenylate cyclase gene family, and members of the PE/PPE gene family, some of which have been implicated in virulence or the host immune response. Several gene families, including the PE/PPE gene family, also had significantly higher synonymous and nonsynonymous substitution frequencies compared to the genome as a whole. We tested a large sample of M. tuberculosis clinical isolates for a subset of the large-sequence and single-nucleotide polymorphisms and found widespread genetic variability at many of these loci. We performed phylogenetic and epidemiological analysis to investigate the evolutionary relationships among isolates and the origins of specific polymorphic loci. A number of these polymorphisms appear to have occurred multiple times as independent events, suggesting that these changes may be under selective pressure. Together, these results demonstrate that polymorphisms among M. tuberculosis strains are more extensive than initially anticipated, and genetic variation may have an important role in disease pathogenesis and immunity.
Asunto(s)
Evolución Molecular , Genoma Bacteriano , Mycobacterium tuberculosis/patogenicidad , Análisis de Secuencia de ADN , Tuberculosis/microbiología , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Variación Genética , Humanos , Datos de Secuencia Molecular , Mycobacterium tuberculosis/genética , Mycobacterium tuberculosis/inmunología , Filogenia , Polimorfismo Genético , Polimorfismo de Nucleótido Simple , Alineación de Secuencia , Tuberculosis/inmunologíaRESUMEN
Pseudomonas putida is a metabolically versatile saprophytic soil bacterium that has been certified as a biosafety host for the cloning of foreign genes. The bacterium also has considerable potential for biotechnological applications. Sequence analysis of the 6.18 Mb genome of strain KT2440 reveals diverse transport and metabolic systems. Although there is a high level of genome conservation with the pathogenic Pseudomonad Pseudomonas aeruginosa (85% of the predicted coding regions are shared), key virulence factors including exotoxin A and type III secretion systems are absent. Analysis of the genome gives insight into the non-pathogenic nature of P. putida and points to potential new applications in agriculture, biocatalysis, bioremediation and bioplastic production.
Asunto(s)
Metabolismo Energético , Genoma Bacteriano , Sistemas de Lectura Abierta/genética , Pseudomonas putida/genética , Proteínas Bacterianas/genética , Secuencia de Bases , Genes Bacterianos/genética , Datos de Secuencia Molecular , Filogenia , Pseudomonas aeruginosa/genética , Pseudomonas aeruginosa/metabolismo , Pseudomonas putida/metabolismoRESUMEN
The 2,160,837-base pair genome sequence of an isolate of Streptococcus pneumoniae, a Gram-positive pathogen that causes pneumonia, bacteremia, meningitis, and otitis media, contains 2236 predicted coding regions; of these, 1440 (64%) were assigned a biological role. Approximately 5% of the genome is composed of insertion sequences that may contribute to genome rearrangements through uptake of foreign DNA. Extracellular enzyme systems for the metabolism of polysaccharides and hexosamines provide a substantial source of carbon and nitrogen for S. pneumoniae and also damage host tissues and facilitate colonization. A motif identified within the signal peptide of proteins is potentially involved in targeting these proteins to the cell surface of low-guanine/cytosine (GC) Gram-positive species. Several surface-exposed proteins that may serve as potential vaccine candidates were identified. Comparative genome hybridization with DNA arrays revealed strain differences in S. pneumoniae that could contribute to differences in virulence and antigenicity.
Asunto(s)
Genoma Bacteriano , Análisis de Secuencia de ADN , Streptococcus pneumoniae/genética , Streptococcus pneumoniae/patogenicidad , Antígenos Bacterianos , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/inmunología , Proteínas Bacterianas/metabolismo , Vacunas Bacterianas , Composición de Base , Metabolismo de los Hidratos de Carbono , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Cromosomas Bacterianos/genética , Biología Computacional , Elementos Transponibles de ADN , ADN Bacteriano/química , ADN Bacteriano/genética , Duplicación de Gen , Genes Bacterianos , Hexosaminas/metabolismo , Análisis de Secuencia por Matrices de Oligonucleótidos , Recombinación Genética , Secuencias Repetitivas de Ácidos Nucleicos , Especificidad de la Especie , Streptococcus pneumoniae/inmunología , Streptococcus pneumoniae/metabolismo , Virulencia , Operón de ARNrRESUMEN
The complete genome sequence of Caulobacter crescentus was determined to be 4,016,942 base pairs in a single circular chromosome encoding 3,767 genes. This organism, which grows in a dilute aquatic environment, coordinates the cell division cycle and multiple cell differentiation events. With the annotated genome sequence, a full description of the genetic network that controls bacterial differentiation, cell growth, and cell cycle progression is within reach. Two-component signal transduction proteins are known to play a significant role in cell cycle progression. Genome analysis revealed that the C. crescentus genome encodes a significantly higher number of these signaling proteins (105) than any bacterial genome sequenced thus far. Another regulatory mechanism involved in cell cycle progression is DNA methylation. The occurrence of the recognition sequence for an essential DNA methylating enzyme that is required for cell cycle regulation is severely limited and shows a bias to intergenic regions. The genome contains multiple clusters of genes encoding proteins essential for survival in a nutrient poor habitat. Included are those involved in chemotaxis, outer membrane channel function, degradation of aromatic ring compounds, and the breakdown of plant-derived carbon sources, in addition to many extracytoplasmic function sigma factors, providing the organism with the ability to respond to a wide range of environmental fluctuations. C. crescentus is, to our knowledge, the first free-living alpha-class proteobacterium to be sequenced and will serve as a foundation for exploring the biology of this group of bacteria, which includes the obligate endosymbiont and human pathogen Rickettsia prowazekii, the plant pathogen Agrobacterium tumefaciens, and the bovine and human pathogen Brucella abortus.
Asunto(s)
Caulobacter crescentus/genética , Genoma Bacteriano , Adaptación Biológica/genética , Ciclo Celular/genética , Metilación de ADN , Repeticiones de Dinucleótido , Datos de Secuencia Molecular , Péptido Hidrolasas/genética , Filogenia , Transducción de Señal , Transcripción GenéticaRESUMEN
Here we determine the complete genomic sequence of the gram negative, gamma-Proteobacterium Vibrio cholerae El Tor N16961 to be 4,033,460 base pairs (bp). The genome consists of two circular chromosomes of 2,961,146 bp and 1,072,314 bp that together encode 3,885 open reading frames. The vast majority of recognizable genes for essential cell functions (such as DNA replication, transcription, translation and cell-wall biosynthesis) and pathogenicity (for example, toxins, surface antigens and adhesins) are located on the large chromosome. In contrast, the small chromosome contains a larger fraction (59%) of hypothetical genes compared with the large chromosome (42%), and also contains many more genes that appear to have origins other than the gamma-Proteobacteria. The small chromosome also carries a gene capture system (the integron island) and host 'addiction' genes that are typically found on plasmids; thus, the small chromosome may have originally been a megaplasmid that was captured by an ancestral Vibrio species. The V. cholerae genomic sequence provides a starting point for understanding how a free-living, environmental organism emerged to become a significant human bacterial pathogen.
Asunto(s)
Cromosomas Bacterianos , ADN Bacteriano , Vibrio cholerae/genética , Secuencia de Bases , Transporte Biológico , Cólera/microbiología , Reparación del ADN , Metabolismo Energético , Evolución Molecular , Regulación Bacteriana de la Expresión Génica , Genoma Bacteriano , Humanos , Datos de Secuencia Molecular , Filogenia , Análisis de Secuencia de ADN , Vibrio cholerae/clasificación , Vibrio cholerae/patogenicidadRESUMEN
The 2,272,351-base pair genome of Neisseria meningitidis strain MC58 (serogroup B), a causative agent of meningitis and septicemia, contains 2158 predicted coding regions, 1158 (53.7%) of which were assigned a biological role. Three major islands of horizontal DNA transfer were identified; two of these contain genes encoding proteins involved in pathogenicity, and the third island contains coding sequences only for hypothetical proteins. Insights into the commensal and virulence behavior of N. meningitidis can be gleaned from the genome, in which sequences for structural proteins of the pilus are clustered and several coding regions unique to serogroup B capsular polysaccharide synthesis can be identified. Finally, N. meningitidis contains more genes that undergo phase variation than any pathogen studied to date, a mechanism that controls their expression and contributes to the evasion of the host immune system.
Asunto(s)
Genoma Bacteriano , Neisseria meningitidis/genética , Neisseria meningitidis/patogenicidad , Análisis de Secuencia de ADN , Variación Antigénica , Antígenos Bacterianos/inmunología , Bacteriemia/microbiología , Cápsulas Bacterianas/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/fisiología , Elementos Transponibles de ADN , Evolución Molecular , Fimbrias Bacterianas/genética , Humanos , Meningitis Meningocócica/microbiología , Infecciones Meningocócicas/microbiología , Datos de Secuencia Molecular , Mutación , Neisseria meningitidis/clasificación , Neisseria meningitidis/fisiología , Sistemas de Lectura Abierta , Operón , Filogenia , Recombinación Genética , Serotipificación , Transformación Bacteriana , Virulencia/genéticaRESUMEN
The genome sequences of Chlamydia trachomatis mouse pneumonitis (MoPn) strain Nigg (1 069 412 nt) and Chlamydia pneumoniae strain AR39 (1 229 853 nt) were determined using a random shotgun strategy. The MoPn genome exhibited a general conservation of gene order and content with the previously sequenced C.trachomatis serovar D. Differences between C.trachomatis strains were focused on an approximately 50 kb 'plasticity zone' near the termination origins. In this region MoPn contained three copies of a novel gene encoding a >3000 amino acid toxin homologous to a predicted toxin from Escherichia coli O157:H7 but had apparently lost the tryptophan biosyntheis genes found in serovar D in this region. The C. pneumoniae AR39 chromosome was >99.9% identical to the previously sequenced C.pneumoniae CWL029 genome, however, comparative analysis identified an invertible DNA segment upstream of the uridine kinase gene which was in different orientations in the two genomes. AR39 also contained a novel 4524 nt circular single-stranded (ss)DNA bacteriophage, the first time a virus has been reported infecting C. pneumoniae. Although the chlamydial genomes were highly conserved, there were intriguing differences in key nucleotide salvage pathways: C.pneumoniae has a uridine kinase gene for dUTP production, MoPn has a uracil phosphororibosyl transferase, while C.trachomatis serovar D contains neither gene. Chromosomal comparison revealed that there had been multiple large inversion events since the species divergence of C.trachomatis and C.pneumoniae, apparently oriented around the axis of the origin of replication and the termination region. The striking synteny of the Chlamydia genomes and prevalence of tandemly duplicated genes are evidence of minimal chromosome rearrangement and foreign gene uptake, presumably owing to the ecological isolation of the obligate intracellular parasites. In the absence of genetic analysis, comparative genomics will continue to provide insight into the virulence mechanisms of these important human pathogens.
Asunto(s)
Chlamydia trachomatis/genética , Chlamydophila pneumoniae/genética , Genoma Bacteriano , Animales , Proteínas Bacterianas/genética , Bacteriófagos/genética , Secuencia de Bases , Infecciones por Chlamydia/microbiología , Chlamydia trachomatis/enzimología , Chlamydia trachomatis/metabolismo , Chlamydia trachomatis/patogenicidad , Chlamydophila pneumoniae/enzimología , Chlamydophila pneumoniae/patogenicidad , Chlamydophila pneumoniae/virología , Inversión Cromosómica , Secuencia Conservada/genética , Evolución Molecular , Genes Bacterianos/genética , Genes Duplicados/genética , Humanos , Ratones/microbiología , Datos de Secuencia Molecular , Nucleótidos/metabolismo , Mapeo Físico de Cromosoma , Recombinación Genética/genética , Origen de Réplica/genéticaRESUMEN
We describe a novel lipothrixvirus, SIFV, of the crenarchaeotal archaeon Sulfolobus islandicus. SIFV (S. islandicus filamentous virus) has a linear virion with a linear double-stranded DNA genome. These two features coincide in several crenarchaeotal but not in any other viruses. The SIFV core is formed by a zipper-like array of DNA-associated protein subunits and is covered by a lipid envelope containing host lipids. We sequenced approximately 96% of the virus genome excepting the DNA termini, which were modified in an unusual, yet uncharacterized, manner. Both, the 5' and the 3' DNA termini were insensitive to enzymatic degradation and labelling. Two open reading frames (ORFs) of the SIFV genome are likely to encode helicases and resemble uncharacterized ORFs from other archaea in sequence. Three ORFs showed sequence similarity with each other and each contained a glycosyl transferase motif. Another ORF of the SIFV genome showed significant sequence similarity to the ORF a291 from the well characterized, spindle-shaped Sulfolobus virus SSV1. Due to its structure, SIFV is classified as a lipothrixvirus.
Asunto(s)
Sulfolobus/virología , Virus/genética , Secuencia de Aminoácidos , Secuencia de Bases , ADN Viral/química , ADN Viral/genética , Electroforesis en Gel de Poliacrilamida , Genoma Viral , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Alineación de Secuencia , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Proteínas Virales/análisis , Proteínas Virales/genética , Virus/aislamiento & purificación , Virus/ultraestructuraRESUMEN
The complete genome sequence of the radiation-resistant bacterium Deinococcus radiodurans R1 is composed of two chromosomes (2,648,638 and 412,348 base pairs), a megaplasmid (177,466 base pairs), and a small plasmid (45,704 base pairs), yielding a total genome of 3,284, 156 base pairs. Multiple components distributed on the chromosomes and megaplasmid that contribute to the ability of D. radiodurans to survive under conditions of starvation, oxidative stress, and high amounts of DNA damage were identified. Deinococcus radiodurans represents an organism in which all systems for DNA repair, DNA damage export, desiccation and starvation recovery, and genetic redundancy are present in one cell.
Asunto(s)
Genoma Bacteriano , Cocos Grampositivos/genética , Mapeo Físico de Cromosoma , Análisis de Secuencia de ADN , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Catalasa/genética , Cromosomas Bacterianos/genética , Daño del ADN , Reparación del ADN/genética , ADN Bacteriano/genética , Metabolismo Energético , Genes Bacterianos , Cocos Grampositivos/química , Cocos Grampositivos/clasificación , Cocos Grampositivos/efectos de la radiación , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Estrés Oxidativo , Plásmidos , Tolerancia a Radiación , Secuencias Repetitivas de Ácidos Nucleicos , Superóxido Dismutasa/genética , Thermus/química , Thermus/genética , Rayos UltravioletaRESUMEN
The 1,860,725-base-pair genome of Thermotoga maritima MSB8 contains 1,877 predicted coding regions, 1,014 (54%) of which have functional assignments and 863 (46%) of which are of unknown function. Genome analysis reveals numerous pathways involved in degradation of sugars and plant polysaccharides, and 108 genes that have orthologues only in the genomes of other thermophilic Eubacteria and Archaea. Of the Eubacteria sequenced to date, T. maritima has the highest percentage (24%) of genes that are most similar to archaeal genes. Eighty-one archaeal-like genes are clustered in 15 regions of the T. maritima genome that range in size from 4 to 20 kilobases. Conservation of gene order between T. maritima and Archaea in many of the clustered regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea.
Asunto(s)
Archaea/genética , Genoma Bacteriano , Recombinación Genética , Thermotoga maritima/genética , Proteínas Bacterianas/metabolismo , ADN Bacteriano , Genes Arqueales , Datos de Secuencia Molecular , Familia de Multigenes , Sistemas de Lectura Abierta , Filogenia , Biosíntesis de Proteínas , Análisis de Secuencia de ADN , Thermotoga maritima/clasificación , Thermotoga maritima/fisiología , Transcripción Genética , Transformación BacterianaRESUMEN
The complete genome sequence of Treponema pallidum was determined and shown to be 1,138,006 base pairs containing 1041 predicted coding sequences (open reading frames). Systems for DNA replication, transcription, translation, and repair are intact, but catabolic and biosynthetic activities are minimized. The number of identifiable transporters is small, and no phosphoenolpyruvate:phosphotransferase carbohydrate transporters were found. Potential virulence factors include a family of 12 potential membrane proteins and several putative hemolysins. Comparison of the T. pallidum genome sequence with that of another pathogenic spirochete, Borrelia burgdorferi, the agent of Lyme disease, identified unique and common genes and substantiates the considerable diversity observed among pathogenic spirochetes.
Asunto(s)
Genoma Bacteriano , Análisis de Secuencia de ADN , Treponema pallidum/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Grupo Borrelia Burgdorferi/genética , Proteínas Portadoras/genética , Proteínas Portadoras/metabolismo , Reparación del ADN/genética , Replicación del ADN/genética , Enzimas de Restricción del ADN/genética , Metabolismo Energético/genética , Genes Bacterianos , Genes Reguladores , Respuesta al Choque Térmico/genética , Lipoproteínas/genética , Proteínas de la Membrana/genética , Datos de Secuencia Molecular , Movimiento , Sistemas de Lectura Abierta , Consumo de Oxígeno/genética , Biosíntesis de Proteínas , Recombinación Genética , Origen de Réplica , Transcripción Genética , Treponema pallidum/metabolismo , Treponema pallidum/patogenicidadRESUMEN
Archaeoglobus fulgidus is the first sulphur-metabolizing organism to have its genome sequence determined. Its genome of 2,178,400 base pairs contains 2,436 open reading frames (ORFs). The information processing systems and the biosynthetic pathways for essential components (nucleotides, amino acids and cofactors) have extensive correlation with their counterparts in the archaeon Methanococcus jannaschii. The genomes of these two Archaea indicate dramatic differences in the way these organisms sense their environment, perform regulatory and transport functions, and gain energy. In contrast to M. jannaschii, A. fulgidus has fewer restriction-modification systems, and none of its genes appears to contain inteins. A quarter (651 ORFs) of the A. fulgidus genome encodes functionally uncharacterized yet conserved proteins, two-thirds of which are shared with M. jannaschii (428 ORFs). Another quarter of the genome encodes new proteins indicating substantial archaeal gene diversity.
Asunto(s)
Archaeoglobus fulgidus/genética , Genes Arqueales , Genoma , Archaeoglobus fulgidus/metabolismo , Archaeoglobus fulgidus/fisiología , Secuencia de Bases , División Celular , ADN Bacteriano/genética , Metabolismo Energético , Regulación Bacteriana de la Expresión Génica , Datos de Secuencia Molecular , Biosíntesis de Proteínas , Transcripción GenéticaRESUMEN
The genome of the bacterium Borrelia burgdorferi B31, the aetiologic agent of Lyme disease, contains a linear chromosome of 910,725 base pairs and at least 17 linear and circular plasmids with a combined size of more than 533,000 base pairs. The chromosome contains 853 genes encoding a basic set of proteins for DNA replication, transcription, translation, solute transport and energy metabolism, but, like Mycoplasma genitalium, it contains no genes for cellular biosynthetic reactions. Because B. burgdorferi and M. genitalium are distantly related eubacteria, we suggest that their limited metabolic capacities reflect convergent evolution by gene loss from more metabolically competent progenitors. Of 430 genes on 11 plasmids, most have no known biological function; 39% of plasmid genes are paralogues that form 47 gene families. The biological significance of the multiple plasmid-encoded genes is not clear, although they may be involved in antigenic variation or immune evasion.
Asunto(s)
Grupo Borrelia Burgdorferi/genética , Genoma Bacteriano , Transporte Biológico , Quimiotaxis , Cromosomas Bacterianos , Reparación del ADN , ADN Bacteriano/biosíntesis , ADN Bacteriano/genética , Metabolismo Energético , Regulación Bacteriana de la Expresión Génica , Enfermedad de Lyme/microbiología , Proteínas de la Membrana/genética , Datos de Secuencia Molecular , Plásmidos , Biosíntesis de Proteínas , Recombinación Genética , Origen de Réplica , Telómero , Transcripción GenéticaRESUMEN
Helicobacter pylori, strain 26695, has a circular genome of 1,667,867 base pairs and 1,590 predicted coding sequences. Sequence analysis indicates that H. pylori has well-developed systems for motility, for scavenging iron, and for DNA restriction and modification. Many putative adhesins, lipoproteins and other outer membrane proteins were identified, underscoring the potential complexity of host-pathogen interaction. Based on the large number of sequence-related genes encoding outer membrane proteins and the presence of homopolymeric tracts and dinucleotide repeats in coding sequences, H. pylori, like several other mucosal pathogens, probably uses recombination and slipped-strand mispairing within repeats as mechanisms for antigenic variation and adaptive evolution. Consistent with its restricted niche, H. pylori has a few regulatory networks, and a limited metabolic repertoire and biosynthetic capacity. Its survival in acid conditions depends, in part, on its ability to establish a positive inside-membrane potential in low pH.
Asunto(s)
Genoma Bacteriano , Helicobacter pylori/genética , Variación Antigénica , Adhesión Bacteriana , Proteínas Bacterianas/metabolismo , Secuencia de Bases , Evolución Biológica , División Celular , Reparación del ADN , ADN Bacteriano/genética , Regulación Bacteriana de la Expresión Génica , Helicobacter pylori/metabolismo , Helicobacter pylori/patogenicidad , Concentración de Iones de Hidrógeno , Datos de Secuencia Molecular , Biosíntesis de Proteínas , Recombinación Genética , Transcripción Genética , VirulenciaRESUMEN
The complete nucleotide sequence (580,070 base pairs) of the Mycoplasma genitalium genome, the smallest known genome of any free-living organism, has been determined by whole-genome random sequencing and assembly. A total of only 470 predicted coding regions were identified that include genes required for DNA replication, transcription and translation, DNA repair, cellular transport, and energy metabolism. Comparison of this genome to that of Haemophilus influenzae suggests that differences in genome content are reflected as profound differences in physiology and metabolic capacity between these two organisms.
Asunto(s)
Genoma Bacteriano , Mycoplasma/genética , Análisis de Secuencia de ADN , Variación Antigénica/genética , Proteínas Bacterianas/genética , Transporte Biológico/genética , Reparación del ADN/genética , Replicación del ADN/genética , ADN Bacteriano/genética , Bases de Datos Factuales , Metabolismo Energético/genética , Genes Bacterianos , Haemophilus influenzae/genética , Datos de Secuencia Molecular , Mycoplasma/inmunología , Mycoplasma/metabolismo , Sistemas de Lectura Abierta , Biosíntesis de Proteínas , Transcripción GenéticaRESUMEN
Smallpox eradication culminated the most successful antimicrobial campaign in medical history. To characterize further the linear double-stranded DNA genome of the aetiological agent of smallpox, we have determined the entire nucleotide sequence of the highly virulent variola major virus, strain Bangladesh-1975 (VAR-BSH; 186,102 base pairs, 33.7% G + C; Genbank accession number, L22579). Here we highlight features of the molecule and focus on a few of the 187 putative proteins that probably contribute to pathogenicity and virus host-range properties. One hundred and fifty proteins were markedly similar to those of vaccinia virus (smallpox vaccine), for which a complete sequence has been reported for strain Copenhagen (VAC-CPN; 191,636 base pairs, 33.3% G + C). The remaining 37 proteins reflected variola-specific sequences or open reading frame divergences for variant proteins, which are often truncated or elongated compared with their vaccinia counterparts.
Asunto(s)
ADN Viral/genética , Genoma Viral , Virus de la Viruela/patogenicidad , Animales , Humanos , Datos de Secuencia Molecular , Mapeo Restrictivo , Homología de Secuencia de Aminoácido , Homología de Secuencia de Ácido Nucleico , Virus Vaccinia/genética , Virus de la Viruela/genética , Proteínas Virales/fisiología , VirulenciaRESUMEN
A database containing mapped partial cDNA sequences from Caenorhabditis elegans will provide a ready starting point for identifying nematode homologues of important human genes and determining their functions in C. elegans. A total of 720 expressed sequence tags (ESTs) have been generated from 585 clones randomly selected from a mixed-stage C. elegans cDNA library. Comparison of these ESTs with sequence databases identified 422 new C. elegans genes, of which 317 are not similar to any sequences in the database. Twenty-six new genes have been mapped by YAC clone hybridization. Members of several gene families, including cuticle collagens, GTP-binding proteins, and RNA helicases were discovered. Many of the new genes are similar to known or potential human disease genes, including CFTR and the LDL receptor.