Communities of metazoan parasites in seven sympatric skate species (Elasmobranchii, Rajidae) from the English Channel and Celtic Sea differing in conservation status.

Elasmobranch populations are in steep decline mainly due to overfishing bycatch, but parasites may accelerate the collapse of vulnerable and/or highly parasitized species. We therefore studied metazoan parasites of Rajidae from the northeast Atlantic: vulnerable Leucoraja fullonica, near-threatened Raja brachyura, Raja clavata, Raja microocellata and Raja undulata, and least-concerned Raja montagui and Leucoraja naevus. Overall prevalence varied from 19% for R. montagui to 100% for L. fullonica. Parasite communities differed between skate species, and prevalence and abundance were higher for L. fullonica, R. microocellata, and R. undulata. We recorded 11 parasite taxa in the study: three nematodes, six cestodes, one monogenean, and one myxosporean. Whatever the skate species, the parasite component community comprised at least two nematode taxa among Phocanema spp., Proleptus sp. and Anisakis simplex. DNA-sequencing revealed that Phocanema azarasi and Phocanema krabbei both occurred in R. microocellata and R. undulata. Phocanema spp. was first recorded in L. fullonica, L. naevus, R. microocellata, R. montagui, and R. undulata, as Proleptus sp. in L. fullonica, and A. simplex in L. fullonica and R. clavata, Rockacestus sp. and Nybelinia sp. in R. undulata, and gill-myxosporeans on L. fullonica, L. naevus, R. microocellata, and R. undulata. The occurrence of 16 new host-parasite associations suggests potential environmental changes. Information provided by trophically transmitted helminths confirmed an opportunistic skate diet based on crustaceans and fish. We discuss results in terms of host fitness loss, bioindicator role of parasites, and anisakiasis risk. We recommend incorporating parasitology in research to improve elasmobranch conservation.

Population ecology and juvenile density hotspots of thornback ray (Raja clavata) around the Shetland Islands, Scotland.

Elasmobranchs are facing global decline, and so there is a pressing need for research into their populations to inform effective conservation and management strategies. Little information exists on the population ecology of skate species around the British Isles, presenting an important knowledge gap that this study aimed to reduce. The population ecology of thornback ray (Raja clavata) around the Shetland Islands, Scotland, was investigated in two habitats: inshore (50-150 m deep) and shallow coastal (20-50 m deep), from 2011 to 2022, and 2017 to 2022, respectively. Using trawl survey data from the annual Shetland Inshore Fish Survey, the size composition of R. clavata catches was compared between shallow and inshore habitats across 157 trawl sets, and 885 individuals, over the years 2017-2022. Catch per unit effort (CPUE) of R. clavata was significantly higher in shallow than that in inshore areas (ANOVA, F = 72.52, df = 1, 5, p < 0.001). Size composition also significantly differed between the two habitats (analysis of similarities, R = 0.96, p = 0.002), with R. clavata being smaller in shallow areas and juveniles (<60 cm) occurring more frequently. Spatial distribution maps confirmed density hotspots of juveniles in shallow habitats, with repeated use of certain locations consistent over time. The results of this study provide the first evidence for R. clavata using shallow areas for potential nurseries in Shetland, which can inform the IUCN's Important Shark and Ray Area process. Furthermore, this study provides important new population ecology information for R. clavata around Shetland, which may have important conservation implications and be valuable for informing species and fisheries stock assessments in this region.

The combined cartilage growth - calcification patterns in the wing-fins of Rajidae (Chondrichthyes): A divergent model from endochondral ossification of tetrapods.

The relationship between cartilage growth - mineralization patterns were studied in adult Rajidae with X-ray morphology/morphometry, undecalcified resin-embedded, heat-deproteinated histology and scanning electron microscopy. Morphometry of the wing-fins, nine central rays of the youngest and oldest specimens documented a significant decrement of radials mean length between inner, middle and outer zones, but without a regular progression along the ray. This suggests that single radial length growth is regulated in such a way to align inter-radial joints parallel to the wing metapterygia curvature. Trans-illumination and heat-deproteination techniques showed polygonal and cylindrical morphotypes of tesserae, whose aligned pattern ranged from mono-columnar, bi-columnar, and multi-columnar up to the crustal-like layout. Histology of tessellated cartilage allowed to identify of zones of the incoming mineral deposition characterized by enhanced duplication rate of chondrocytes with the formation of isogenic groups, whose morphology and topography suggested a relationship with the impending formation of the radials calcified column. The morphotype and layout of radial tesserae were related to mechanical demands (stiffening) and the size/mass of the radial cartilage body. The cartilage calcification pattern of the batoids model shares several morphological features with tetrapods' endochondral ossification, that is, (chondrocytes' high duplication rate, alignment in rows, increased volume of chondrocyte lacunae), but without the typical geometry of the metaphyseal growth plates. RESEARCH HIGHLIGHTS: 1. The wing-fins system consists of stiff radials, mobile inter-radial joints and a flat inter-radial membrane adapted to the mechanical demand of wing wave movement. 2. Growth occurs by forming a mixed calcified-uncalcified cartilage texture, developing intrinsic tensional stresses documented by morphoanatomical data.

Bacterial community dynamics during embryonic development of the little skate (Leucoraja erinacea).

BACKGROUND: Microbial transmission from parent to offspring is hypothesized to be widespread in vertebrates. However, evidence for this is limited as many evolutionarily important clades remain unexamined. There is currently no data on the microbiota associated with any Chondrichthyan species during embryonic development, despite the global distribution, ecological importance, and phylogenetic position of this clade. In this study, we take the first steps towards filling this gap by investigating the microbiota associated with embryonic development in the little skate, Leucoraja erinacea, a common North Atlantic species and popular system for chondrichthyan biology. METHODS: To assess the potential for bacterial transmission in an oviparous chondrichthyan, we used 16S rRNA amplicon sequencing to characterize the microbial communities associated with the skin, gill, and egg capsule of the little skate, at six points during ontogeny. Community composition was analyzed using the QIIME2 pipeline and microbial continuity between stages was tracked using FEAST. RESULTS: We identify site-specific and stage-specific microbiota dominated by the bacterial phyla Proteobacteria and Bacteroidetes. This composition is similar to, but distinct from, that of previously published data on the adult microbiota of other chondrichthyan species. Our data reveal that the skate egg capsule harbors a highly diverse bacterial community-particularly on the internal surface of the capsule-and facilitates intergenerational microbial transfer to the offspring. Embryonic skin and external gill tissues host similar bacterial communities; the skin and gill communities later diverge as the internal gills and skin denticles develop. CONCLUSIONS: Our study is the first exploration of the chondrichthyan microbiota throughout ontogeny and provides the first evidence of vertical transmission in this group.

Parasitic flatworms infecting thorny skate, Amblyraja radiata: Infection by the monogeneans Acanthocotyle verrilli and Rajonchocotyle emarginata in Svalbard.

Parasite diversity above the Arctic circle remains understudied even for commercially valuable host taxa. Thorny skate, Amblyraja radiata, is a common bycatch species with a growing commercial value. Its natural range covers both sides of the North Atlantic including the Arctic zone. Svalbard is a Norwegian archipelago located on the northwest corner of the Barents Shelf which sustains a spectacular species diversity. So far, several monogenean species have been reported infecting thorny skate across the Atlantic Ocean. In the present study, we intend to fill in the knowledge gap on monogenean parasites infecting thorny skate in the northern part of its range and thus indirectly assess the connectivity between the thorny skate populations off the Svalbard coast and from previously studied locations. 46 monogenean individuals were recovered from 11 specimens of thorny skate. Following morphological and molecular assessment, two species of monogeneans, Acanthocotyle verrilli and Rajonchocotyle emarginata, were identified. The results serve as the northernmost record for both parasite genera and the first record of monogenean species off Svalbard. Detailed morphometric evaluation revealed a relatively high level of morphological variation in A. verrilli compared to its congeners. Phylogenetic reconstruction placed A. verrilli in a well-supported clade with A. imo. Our study also suggests high diagnostic significance of sclerotised structures in the identification of Rajonchocotyle. Even though the occurrence of two directly transmitted parasite species supports the previously suggested long-distance migration of A. radiata, future studies employing highly variable genetic markers are needed to assess the ongoing and historical migration patterns.

Popularidade e uso medicinal do pinhão-roxo (Jatropha gossipifolia L. ) em comunidades ribeirinhas do pantanal do Mato Grosso do Sul, com ênfase em envenenamentos causados por arraias fluviais / Popularity and medicinal use of purple pine nut (Jatropha gossipifolia L.) in riverside communities in the Pantanal of Mato Grosso do Sul, with an emphasis on poisonings caused by river stingrays

O Pantanal é a maior planície inundável do planeta. A população humana da região utiliza vegetais que encontram no dia a dia e, com o tempo, isso os levou a descobrir diferentes finalidades alimentares e até usos terapêuticos dessas plantas. Este estudo tem como objetivo compreender a popularidade do pinhão-roxo (Jatropha gossipifolia L.) e seu uso como planta medicinal em duas comunidades ribeirinhas do município de Corumbá (MS), Brasil, com ênfase nos envenenamentos causados por arraias de água doce, frequentes na área. Mais da metade dos entrevistados utilizou o pinhão-roxo em várias doenças, especialmente no controle de sangramentos e na cicatrização de feridas. O uso de infusões em úlceras crônicas causadas por peixes peçonhentos é amplamente mencionado pelos pescadores entrevistados, particularmente em envenenamentos com necrose cutânea causada por arraias de água doce. Outras indicações citadas são o tratamento de micoses cutâneas e odontalgias, que não são mencionadas nas referências anteriores, indicando a necessidade de estudos clínicos e farmacológicos adicionais para avaliar esses propósitos.

Trophic ecology and ontogenetic diet shift of the blue skate (Dipturus cf. flossada).

Knowledge of skate ecology must be improved to ensure their effective protection. This study represents the first description of diet composition for one of the largest European rajid, the blue skate Dipturus cf. flossada. A total of 346 specimens collected in the Celtic Sea from 2012 to 2015 were analysed for their gut content, with respect to individual total length, maturity stage and sex. Overall, the blue skate diet mainly consisted of shrimps and prawns, crabs and teleost fishes. Nonmetric multidimensional scaling and ANOSIM analyses revealed major ontogenetic shifts in the feeding strategy that were related to size and maturity, but not to sex. Shrimps and prawns, mostly composed of Crangon allmanni, dominated the diet of small and immature individuals, while mod-size skate primarily preyed on crabs. The prevalence of crustaceans decreased with size and maturity, and was gradually replaced by teleost fishes in large mature individuals. A concomitant increase of the trophic level with size revealed that large blue skate become a top predator within the ecosystem. These results highlight the need to include ontogenetic changes in the diet description. As individuals grow and mature, blue skates can play a fundamental role in the structure of the Celtic Sea food web.

The complete mitochondrial genome of the blue skate Dipturus batis.

The complete mitochondrial genome of the blue skate Dipturus batis is described from shotgun sequencing on an Illumina next-generation sequencing platform. We report a 16,911 bp long sequence similar in size to other members of the genus, containing 13 protein-coding regions, 22 tRNA genes, 2 rRNA genes, and 2 non-coding areas. Phylogenetic analysis was performed using the complete mitochondrial genomes of 17 related species, placing D. batis within the Rajini tribe of the Rajidae family, consistent with current taxonomy. The new resource adds to a growing database of rajid mitogenomes which will help resolve phylogenetic relationships within the family.

Description and quantitative analysis of the dentition of the southern thorny skate Amblyraja doellojuradoi.

A description of the tooth morphology of 234 jaws from the southern thorny skate Amblyraja doellojuradoi in the south-west Atlantic Ocean is given. Seven rows of teeth were selected and length and width of each tooth in these rows were measured. It was found that functional series corresponds to the third teeth and the average width and length of these teeth were compared among jaws, maturity stages, sexes and rows. Generalized linear models were used to determine the subset of measures that most contribute to explain the variability between groups. It was observed that males have longer teeth than females, but the teeth of females are wider. These differences are attributed to reproductive behaviour, in which males bite females to hold them during copulation. This study provides a description of the teeth of A. doellojuradoi, supplying a valuable tool for identification of species. In addition, the establishment of the main variations observed in the dentition, improves the understanding of the species' biology.

Feeding ecology of elasmobranch species in southeastern Brazil

The feeding ecology of five elasmobranch species was studied on the southern coast of Rio de Janeiro, southwestern Atlantic Ocean. The specimens were caught with a trawl or bottom longline between January 2006 and August 2007. The diets of Psammobatis rutrum and Psammobatis extenta appeared to be basically carcino-benthophagous, with a very small niche width. Rioraja agassizii was basically carcino/ichthyo-benthophagous, also with a narrow niche, including teleost fish and shrimp, but in different proportions according to age and sex. Rhizoprionodon lalandii was ichthyophagous, not influenced by age or sex. The analyses of these species and Atlantoraja cyclophora indicated two trophic groups: one composed of the smaller rays, P. extenta and P. rutrum, which basically fed on small crustaceans, polychaetes and nematodes; and the other of R. lalandii and the larger rays R. agassizii and A. cyclophora, which preyed on teleost fish and brachyurans.(AU)

Devido à lacuna de conhecimento sobre os elasmobrânquios estudamos a ecologia alimentar de cinco espécies desse grupo, no litoral sul do Rio de Janeiro. Os exemplares foram capturados por rede de arrasto e espinhel de fundo, entre janeiro de 2006 e agosto de 2007. As dietas de Psammobatis rutrum e Psammobatis extenta se mostraram basicamente carcino-bentofagas, com uma largura de nicho estreito. Rioraja agassizii foi considerada carcino/ictio-bentófaga, também com uma largura de nicho estreita. A espécie se alimenta com peixe e camarão, mas em proporções diferentes de acordo com a idade e sexo. A dieta de Rhizoprionodon lalandii foi considerada ictiófaga e não é influenciada pela idade ou sexo. As análises destas espécies e Atlantoraja cyclophora indicaram a formação de dois grupos tróficos: um composto pelas raias menores, P. extenta e P. rutrum, que basicamente se alimentam de pequenos crustáceos, poliquetos e nematodas; e o outro de R. lalandii e as raias maiores R. agassizii e A. cyclophora, que predam peixes teleósteos e brachyuras.(AU)

Early life sensory ability-ventilatory responses of thornback ray embryos (Raja clavata) to predator-type electric fields.

Predator avoidance is fundamental for survival and it can be particularly challenging for prey animals if physical movement away from a predatory threat is restricted. Many sharks and rays begin life within an egg capsule that is attached to the sea bed. The vulnerability of this sedentary life stage is exacerbated in skates (Rajidae) as the compulsory ventilatory activity of embryos makes them conspicuous to potential predators. Embryos can reduce this risk by mediating ventilatory activity if they detect the presence of a predator using an acute electrosense. To determine how early in embryonic life predator elicited behavioral responses can occur, the reactions of three different age groups (1/3 developed, 2/3 developed, and near hatching) of embryonic thornback rays Raja clavata were tested using predator-type electric field stimuli. Egg capsules were exposed to continuous or intermittent stimuli in order to assess varying predator-type encounter scenarios on the ventilatory behavior of different developmental stages. All embryos reacted with a "freeze response" following initial electric field (E-field) exposure, ceasing ventilatory behavior in response to predator presence, demonstrating electroreceptive functionality for the first time at the earliest possible stage in ontogeny. This ability coincided with the onset of egg ventilatory behavior and may represent an effective means to enhance survival. A continuous application of stimuli over time revealed that embryos can adapt their behavior and resume normal activity, whereas when presented intermittently, the E-field resulted in a significant reduction in overall ventilatory activity across all ages. Recovery from stimuli was significantly quicker in older embryos, potentially indicative of the trade-off between avoiding predation and adequate respiration. © 2015 Wiley Periodicals, Inc. Develop Neurobiol 76: 721-729, 2016.

Complete mitochondrial genome of the mottled skate: Raja pulchra (Rajiformes, Rajidae).

The complete sequence of mitochondrial DNA of a mottled skate, Raja pulchra was sequenced as being circular molecules of 16,907 bp including 2 rRNA, 22 tRNA, 13 protein-coding genes (PCGs), and an AT-rich control region. The organization of the PCGs is the same as those found in other Rajidae species. The nucleotide of L-strand is composed of 29.8% A, 28.0% C, 27.9% T, and 14.3% G with a bias toward A + T slightly. Twelve of 13 PCGs are initiated by the ATG codon while COX1 starts with GTG. Only ND4 harbors the incomplete termination codon, TA. All tRNA genes have a typical clover-leaf structure of mitochondrial tRNA with the exception of [Formula: see text] which has a reduced DHU arm. This mitogenome will provide essential information for better phylogenetic resolution and precision of the family Rajidae and the genus Raja as well as for establishment of a fish stock recovery plan of the species.

Complete mitochondrial genome of the Yellownose skate: Zearaja chilensis (Rajiformes, Rajidae).

The complete sequence of mitochondrial DNA of a Yellownose skate, Zearaja chilensis was determined for the first time. It is 16,909 bp in length covering 2 rRNA, 22 tRNA and 13 protein coding genes with the identical gene order and structure as those of other Rajidae species. The nucleotide of L-strand is composed of low G (14.3%), and slightly high A + T (58.9%) nucleotides. The strong codon usage bias against the use of G (6.0%) is found at the third codon positions. Twelve of the 13 protein coding genes use ATG as the start codon while COX1 starts with GTG. As for the stop codon, only ND4 shows an incomplete stop codon TA. This is the first report of the mitogenome for a species in the genus Zearaja, providing a valuable source of genetic information on the evolution of the family Rajidae and the genus Zearaja as well as for establishment of a sustainble fishery management plan of the species.

Reproductive biology of the Alaska skate Bathyraja parmifera, with comments on an intersexual individual.

A total of 1357 specimens of Alaska skate Bathyraja parmifera were collected in the eastern Bering Sea by fisheries observers and during scientific groundfish surveys from 2003 to 2005. Male and female gonads were examined for maturity stage and seasonal reproductive timing. Based on seasonal reproductive data, including the occurrence of egg cases, ovum size, ovum number, shell-gland width and gonado-somatic index, this species appears to reproduce continually throughout the year. Potential effects of maternal size upon the size and number of mature oocytes were also investigated, with total length having a significant, although weak, influence on both. Morphology of a single intersexual individual encountered during the collection period is also described.

In situ observations of a possible skate nursery off the western Antarctic Peninsula.

A dense aggregation of skate egg cases was imaged during a photographic survey of the sea floor along the western Antarctic Peninsula in November 2013. Egg cases were noted in a narrow band between 394 and 443 m depth. Although some skate species in other oceans are known to utilize restricted areas to deposit eggs in great numbers, such nurseries have not been described in the Southern Ocean.

Using biological variables and reproductive strategy of the undulate ray Raja undulata to evaluate productivity and susceptibility to exploitation.

The present work provides a detailed analysis of the reproductive strategy of the undulate ray Raja undulata in Portuguese mainland waters. The species was found mostly between 30 and 40 m deep on sandy bottoms. Egg-laying sites were observed in the north, centre and south-west regions, mainly at depths below 30 m. The peak of the reproductive season occurred from December to May. Asynchrony between reproductively active females and males appeared to occur, although most adult males were capable of reproducing throughout the year. The estimated length at 50% maturity was 86·2 cm (8·7 years) and 76·8 cm (7·6 years) total length for females and males, respectively. The maximum potential fecundity was estimated to be 69·8 follicles per female per reproductive season, which are released in 4·7 batches of 15 follicles. The life-history and demographic parameters of R. undulata are similar to those of other skate species, while the potential rate of population increase (0·49) is above the published values for other elasmobranch species. With these new findings, this study makes an important contribution to the understanding of the life history of R. undulata, and provides a first evaluation of the productivity and susceptibility of the species to exploitation.

Complete mitochondrial genome of the Kwangtung skate: Dipturus kwangtungensis (Rajiformes, Rajidae).

The complete sequence of mitochondrial DNA of a Kwangtung skate, Dipturus kwangtungensis, was determined as being circular molecules of 16,912 bp including 2 rRNA, 22 tRNA, 13 protein coding genes (PCGs) and a control region. The arrangement of the PCGs is the same as that found in other Rajidae species. The nucleotide of L-strand which encodes most of the proteins is composed of 30.2% A, 27.4% C, 28.2% T and 14.2% G with a bias toward A+T slightly. Twelve of 13 PCGs are initiated by the ATG codon while COX1 starts with GTG. Only ND4 harbors the incomplete termination codon, TA. All tRNA genes have a typical clover-leaf structure of mitochondrial tRNA with the exception of tRNA(Ser)AGY, which has a reduced DHU arm. This mitogenome is the first report for a species of the genus Dipturus, which will become an important source of information on the phylogenetic relationship and the evolution of the genus Dipturus within the family Rajidae.

Arctic skate Amblyraja hyperborea preys on remarkably large glacial eelpouts Lycodes frigidus.

During scientific surveys on the continental slopes north-west of Spitsbergen and off north-east Greenland (c. 600 and 1000 m depths), two female Arctic skates Amblyraja hyperborea were caught while swallowing extraordinary large individuals of glacial eelpout Lycodes frigidus. The total length (LT) of the prey constituted 50 and 80% of the LT of the skates, which reveal that A. hyperborea are capable predators of fishes of surprisingly large relative size.

The complete mitochondrial genome of the Longnose skate: Raja rhina (Rajiformes, Rajidae).

The complete sequence of mitochondrial DNA of a longnose skate, Raja rhina was determined for the first time. It is 16,910 bp in length containing 2 rRNA, 22 tRNA and 13 protein coding genes with the same gene order and structure as those of other Rajidae species. The nucleotide of L-strand is composed of 30.1% A, 27.2% C, 28.5% T and 14.2% G, showing a slight A + T bias. The G is the least used base and markedly lower at the third codon position (5.4%). Twelve of the 13 protein coding genes use ATG as their start codon while the COX1 starts with GTG. As for stop codon, only ND4 shows incomplete stop codon TA. This mitogenome is the first report for a species of the genus Raja, and providing a valuable resource of genetic information for understanding the phylogenetic relationship and the evolution of the genus Raja as well as the family, Rajidae.

The secret of the mermaid's purse: phylogenetic affinities within the Rajidae and the evolution of a novel reproductive strategy in skates.

The systematics of the skates in the family Rajidae have been contentious for over 250years, with most studies inferring relationships among geographically clustered species, and non-overlapping taxa and data sets. Rajid skates are oviparous, and lay egg capsules with a single embryo. However, two species exhibit a derived form of egg laying, with multiple embryos per egg capsule. We provide a molecular assessment of the phylogenetic relationships of skates in the family Rajidae based on three mitochondrial genes. The resulting topology supports monophyly the family. However the genusRajais polyphyletic, and several species assemblages need to be revised. We propose a new assemblage, the Rostrajini, which organizesrajid species into three well-supported tribal lineages for the first time. Further, these data provide an independent assessment of monophyly for the two species exhibiting multiple embryos per egg capsule, supporting their status as the unique genusBeringraja. In addition, we find that among the different size classes of egg capsules, ranging from 1 to 8 embryos per capsule in this genus, there is variation in frequency and survivorship. InBeringraja binoculata, the strategy of having two embryos per egg capsule occurs most frequently and with the highest fitness.