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1.
Braz J Microbiol ; 51(4): 2049-2056, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-32895889

RESUMEN

In this study, we described the comparison among pulsed-field gel electrophoresis (PFGE), random amplified polymorphic DNA (RAPD), ribotyping, and PCR-ribotyping methods for subtyping Salmonella Enteritidis isolated from an industrial chicken production chain. One hundred and eight S. Enteritidis were isolated at all stages of poultry meat processing plant. These isolates were pheno- and genotypically characterized by using antimicrobial susceptibility test, phage typing, RAPD, PFGE, ribotyping, and PCR-ribotyping. The highest antibiotic resistance rates were observed for enrofloxacin (18.5%) followed by furazolidone (15.7%), cefoxitin (1.8%), ciprofloxacin, and ampicillin with 0.9% each one, while seven isolates (6.4%) were pan-susceptible. Most strains belonged to the globally disseminated phage type PT4 (n = 74; 69.2%). Additionally, we identified strains belonging to phage types PT1 (n = 19; 17.8%) and PT7a (n = 14; 13.1%). Moreover, our results showed that these four molecular methods indicate similar results showing high similarity (≥ 90%) among S. Enteritidis strains, suggesting that these isolates appear to be from a common ancestor being spread at all stages of the poultry production chain. In summary, the combined molecular approaches of these methods remain a suitable alternative to efficiently subtyping S. Enteritidis in the absence of high-resolution genotyping methods and these results may serve as a baseline study for development of mitigation strategies.


Asunto(s)
Pollos/microbiología , Salmonelosis Animal/microbiología , Salmonella enteritidis/clasificación , Animales , Antibacterianos/farmacología , Técnicas de Tipificación Bacteriana , Tipificación de Bacteriófagos , Brasil , ADN Bacteriano/genética , Electroforesis en Gel de Campo Pulsado , Pruebas de Sensibilidad Microbiana , Reacción en Cadena de la Polimerasa , Técnica del ADN Polimorfo Amplificado Aleatorio , Ribotipificación , Salmonella enteritidis/efectos de los fármacos
2.
J Microbiol Methods ; 175: 105974, 2020 08.
Artículo en Inglés | MEDLINE | ID: mdl-32531232

RESUMEN

There has been an increase in the incidence and severity of Clostridioides difficile infection (CDI) worldwide, and strategies to control, monitor, and diminish the associated morbidity and mortality have been developed. Several typing methods have been used for typing of isolates and studying the epidemiology of CDI; serotyping was the first typing method, but then was replaced by pulsed-field gel electrophoresis (PFGE). PCR ribotyping is now the gold standard method; however, multi locus sequence typing (MLST) schemes have been developed. New sequencing technologies have allowed comparing whole bacterial genomes to address genetic relatedness with a high level of resolution and discriminatory power to distinguish between closely related strains. Here, we review the most frequent C. difficile ribotypes reported worldwide, with a focus on their epidemiology and genetic characteristics.


Asunto(s)
Clostridioides difficile , Infecciones por Clostridium , Genoma Bacteriano , Ribotipificación/métodos , Clostridioides difficile/clasificación , Infecciones por Clostridium/epidemiología , Infecciones por Clostridium/microbiología , Humanos , Epidemiología Molecular
3.
Rev. argent. microbiol ; Rev. argent. microbiol;51(4): 359-362, dic. 2019. graf
Artículo en Inglés | LILACS | ID: biblio-1057401

RESUMEN

Abstract Listeria monocytogenes is a foodborne pathogen. The recent alert for L. monocytogenes in vegetables from Argentina warns about the importance of reinforcing its isolation, characterization and subtyping in food, clinical and environmental samples. The aim of the present study was to compare the discriminatory power of enterobacterial repetitive interpower; genic consensus polymerase chain reaction (ERIC-PCR), automated ribotyping and pulsed-field gel electrophoresis (PFGE) to subtype strains of L. monocytogenes isolated from Argentine meat and environmental samples. Simpson's Diversity Index (DI) was calculated on the basis of based on the dendrograms obtained in the by cluster analysis, showing the following discriminatory power: ApaI-PFGE (0.980), AscI-PFGE (0.966), ribotyping (0.912), ERIC-PCR (0.886). The ID values between ApaI- and AscI-PFGE and between ribotyping and ERIC-PCR were not significantly different. Of the three techniques evaluated, PFGE showed the highest discriminatory power. However, the subtyping techniques should be accompanied by effective food monitoring strategies and reliable clinical and epidemiological studies.


Resumen Listeria monocytogenes es un patógeno alimentario. La reciente alerta por la presencia de L. monocytogenes en vegetales en Argentina advierte sobre la importancia de reforzar el aislamiento, la caracterización y la subtipificación de esta bacteria en muestras clínicas de alimentos y ambientales. El objetivo del presente estudio fue comparar el poder discriminatorio de enterobacterial repetitive intergenic consensus polymerase chain reaction (ERIC-PCR), la ribotipificación automatizada y la pulsed-field gel electrophoresis (PFGE) para subtipificar cepas de L. monocytogenes aisladas de carne y de muestras ambientales en Argentina. El índice de diversidad (ID) de Simpson, calculado a partir de los dendrogramas obtenidos en el análisis de agrupamiento, mostró los siguientes resultados: Apal-PFGE (0,980), AscI-PFGE (0,966), riboti-pado (0,912), ERIC-PCR (0,886). Los valores obtenidos no fueron significativamente diferentes al comparar entre Apal- y AscI-PFGE, ni entre ribotipadoy ERIC-PCR. De las técnicas evaluadas, la PFGE presentó el mayor poder discriminatorio. Sin embargo, las técnicas de subtipificación deberían acompañarse de estrategias de control de los alimentos efectivas y de estudios clínicos y epidemiológicos confiables.


Asunto(s)
Técnicas de Tipificación Bacteriana/métodos , Listeria monocytogenes/clasificación , Análisis Discriminante , Ribotipificación/métodos , Listeria monocytogenes/aislamiento & purificación
4.
Rev Argent Microbiol ; 51(4): 359-362, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31023493

RESUMEN

Listeria monocytogenes is a foodborne pathogen. The recent alert for L. monocytogenes in vegetables from Argentina warns about the importance of reinforcing its isolation, characterization and subtyping in food, clinical and environmental samples. The aim of the present study was to compare the discriminatory power of enterobacterial repetitive intergenic consensus polymerase chain reaction (ERIC-PCR), automated ribotyping and pulsed-field gel electrophoresis (PFGE) to subtype strains of L. monocytogenes isolated from Argentine meat and environmental samples. Simpson's Diversity Index (DI) was calculated on the basis of based on the dendrograms obtained in the by cluster analysis, showing the following discriminatory power: ApaI-PFGE (0.980), AscI-PFGE (0.966), ribotyping (0.912), ERIC-PCR (0.886). The ID values between ApaI- and AscI-PFGE and between ribotyping and ERIC-PCR were not significantly different. Of the three techniques evaluated, PFGE showed the highest discriminatory power. However, the subtyping techniques should be accompanied by effective food monitoring strategies and reliable clinical and epidemiological studies.


Asunto(s)
Listeria monocytogenes/clasificación , Tipificación Molecular/métodos , Electroforesis en Gel de Campo Pulsado , Reacción en Cadena de la Polimerasa , Ribotipificación
5.
Int J Infect Dis ; 65: 44-49, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-28986313

RESUMEN

OBJECTIVES: To describe the clinical characteristics, outcomes, and factors associated with Clostridium difficile infection (CDI) due to ribotype 027 (RT027) and recurrence, including an outbreak period, with transition to endemicity. METHODS: A case-control study was performed. Clinical and demographic data were collected for patients with CDI during the period January 2008 to December 2015. Ribotyping of the isolates and PCR for toxin A, B, and binary were performed. RESULTS: Among 324 episodes of CDI, 27.7% were caused by RT027. Previous fluoroquinolone use (odds ratio (OR) 1.79, 95% confidence interval (CI) 1.01-3.17), previous gastrointestinal endoscopy (OR 2.17, 95% CI 1.29-3.65), chemotherapy (OR 0.43, 95% CI 0.19-0.95), and total enteral nutrition (OR 0.42, 95% CI 0.18-0.97) were associated with RT027. Age >65 years (OR 2.05, 95% CI 1.02-4.10), severe initial episode (OR 3.35, 95% CI 1.60-6.15), previous proton pump inhibitor use (OR 2.34, 95% CI 1.15-4.74), and continued fluoroquinolones (OR 3.08, 95% CI 1.11-8.51) were associated with recurrence. Among the non-RT027, 59.8% were not assigned by the ribotyping database and 50.7% presented binary toxin. CONCLUSIONS: In this population, CDI due to the RT027 strain was not associated with poorer outcomes. This study reinforces the importance of avoiding fluoroquinolones and PPIs to prevent recurrences. The presence of virulence factors among non-RT027 C. difficile strains underscores the importance of performing molecular epidemiology surveillance.


Asunto(s)
Clostridioides difficile/aislamiento & purificación , Infecciones por Clostridium/epidemiología , Brotes de Enfermedades , Adulto , Anciano , Toxinas Bacterianas/aislamiento & purificación , Índice de Masa Corporal , Estudios de Casos y Controles , Clostridioides difficile/clasificación , Infecciones por Clostridium/tratamiento farmacológico , Femenino , Fluoroquinolonas/uso terapéutico , Humanos , Masculino , México/epidemiología , Persona de Mediana Edad , Epidemiología Molecular , ARN Bacteriano/aislamiento & purificación , Recurrencia , Ribotipificación , Centros de Atención Terciaria
6.
J Food Prot ; 80(1): 158-163, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-28221880

RESUMEN

Salmonella spp. are among the most important agents of foodborne diseases all over the world. Human Salmonella outbreaks are often associated with the consumption of poultry products (meat and eggs), and one of the most prevalent serotypes associated with these products is Salmonella Enteritidis. Brazil is one of the most important poultry exporters in the world. In southern Brazil, three closely related clones of Salmonella Enteritidis have been responsible for the majority of foodborne Salmonella outbreaks over the past decade. However, until now, there has been little information regarding the clonal relationship among the Brazilian Salmonella strains of avian origin and those involved in foodborne outbreaks. Therefore, the aim of the present study was to complete the molecular characterization of Salmonella Enteritidis strains isolated from poultry and food sources involved in Salmonella outbreaks. PCR ribotyping was performed to discriminate the strains into different ribotype profiles according to the banding pattern amplification. This technique was able to differentiate the Salmonella Enteritidis strains into two banding patterns: R2 and R4. R2 accounted for 98.7% of the strains. DNA sequencing of the 600-bp fragment, present in all ribotypes, was applied to confirm this result. The sequences generated showed high levels of similarity, ranging from 99.7 to 100%, and were grouped into a single cluster. These results suggest that there is a clonal relationship among the Salmonella Enteritidis strains responsible for several salmonellosis outbreaks and the strains collected from poultry sources.


Asunto(s)
Aves de Corral , Serogrupo , Animales , Brasil/epidemiología , Brotes de Enfermedades , Humanos , Infecciones por Salmonella/epidemiología , Salmonella enteritidis/aislamiento & purificación
7.
Front Microbiol ; 8: 2587, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-29312260

RESUMEN

Salmonellosis is one of the most common causes of foodborne infection and a leading cause of human gastroenteritis. Throughout the last decade, Salmonella enterica serotype Typhimurium (ST) has shown an increase report with the simultaneous emergence of multidrug-resistant isolates, as phage type DT104. Therefore, to successfully control this microorganism, it is important to attribute salmonellosis to the exact source. Studies of Salmonella source attribution have been performed to determine the main food/food-production animals involved, toward which, control efforts should be correctly directed. Hence, the election of a ST subtyping method depends on the particular problem that efforts must be directed, the resources and the data available. Generally, before choosing a molecular subtyping, phenotyping approaches such as serotyping, phage typing, and antimicrobial resistance profiling are implemented as a screening of an investigation, and the results are computed using frequency-matching models (i.e., Dutch, Hald and Asymmetric Island models). Actually, due to the advancement of molecular tools as PFGE, MLVA, MLST, CRISPR, and WGS more precise results have been obtained, but even with these technologies, there are still gaps to be elucidated. To address this issue, an important question needs to be answered: what are the currently suitable subtyping methods to source attribute ST. This review presents the most frequently applied subtyping methods used to characterize ST, analyses the major available microbial subtyping attribution models and ponders the use of conventional phenotyping methods, as well as, the most applied genotypic tools in the context of their potential applicability to investigates ST source tracking.

8.
Rev. Soc. Bras. Med. Trop ; Rev. Soc. Bras. Med. Trop;47(4): 437-446, Jul-Aug/2014. tab, graf
Artículo en Inglés | LILACS | ID: lil-722309

RESUMEN

Introduction Methicillin-resistant Staphylococcus aureus (MRSA) strains have been responsible for many nosocomial outbreaks. Within hospitals, colonized employees often act as reservoirs for the spread of this organism. This study collected clinical samples of 91 patients admitted to the intensive care unit (ICU), hemodialysis/nephrology service and surgical clinic, and biological samples from the nasal cavities of 120 professionals working in those environments, of a University Hospital in Recife, in the State of Pernambuco, Brazil. The main objective of this study was to determine the occurrence and dissemination of methicillin- and vancomycin-resistant Staphylococcus spp. Methods The isolates obtained were tested for susceptibility to oxacillin and vancomycin and detection of the mecA gene. In addition, the isolates were evaluated for the presence of clones by ribotyping-polymerase chain reaction (PCR). Results MRSA occurrence, as detected by the presence of the mecA gene, was more prevalent among nursing technicians; 48.1% (13/27) and 40.7% (11/27) of the isolates were from health professionals of the surgical clinic. In patients, the most frequent occurrence of mecA-positive isolates was among the samples from catheter tips (33.3%; 3/9), obtained mostly from the hemodialysis/nephrology service. Eight vancomycin-resistant strains were found among the MRSA isolates through vancomycin screening. Based on the amplification patterns, 17 ribotypes were identified, with some distributed between patients and professionals. Conclusions Despite the great diversity of clones, which makes it difficult to trace the source of the infection, knowledge of the molecular and phenotypic profiles of Staphylococcus samples can contribute towards guiding therapeutic approaches in the treatment and control of nosocomial infections. .


Asunto(s)
Adulto , Femenino , Humanos , Masculino , Persona de Mediana Edad , Antibacterianos/farmacología , Infección Hospitalaria/microbiología , Staphylococcus aureus Resistente a Meticilina/aislamiento & purificación , Oxacilina/farmacología , Infecciones Estafilocócicas/microbiología , Resistencia a la Vancomicina , Vancomicina/farmacología , Brasil , Proteínas Bacterianas/genética , Infección Hospitalaria/diagnóstico , Infección Hospitalaria/transmisión , Personal de Salud , Hospitales Universitarios , Pruebas de Sensibilidad Microbiana , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Staphylococcus aureus Resistente a Meticilina/genética , Cavidad Nasal/microbiología , Reacción en Cadena de la Polimerasa , Ribotipificación , Infecciones Estafilocócicas/diagnóstico , Infecciones Estafilocócicas/transmisión
9.
Rev. Soc. Venez. Microbiol ; 30(2): 90-96, dic. 2010. ilus, tab
Artículo en Español | LILACS | ID: lil-631681

RESUMEN

Bacillus thuringiensis es una bacteria esporogénica grampositiva del grupo B. cereus, caracterizada por la producción de δ-endotoxinas codificadas por una familia de genes cry, mayoritariamente plasmídicos con actividad patógena específica contra larvas de insectos. Esta propiedad ha sido usada en la formulación de productos comerciales para control de insectos plaga como Hylesia metabus “palometa peluda” que afecta a los pobladores de la región nororiental de Venezuela. En el Centro Venezolano de Colecciones de Microorganismos se ha iniciado la construcción de una colección de cepas nativas de B. thuringiensis, a partir de muestras de suelos y larvas muertas de H. metabus colectadas en zonas afectadas, que pudiera ser utilizada en la elaboración local de bioinsecticidas para control de ésta y otras plagas. El empleo de condiciones selectivas de crecimiento, pruebas bioquímicas complementarias y presencia de inclusiones parasporales, seguido de la caracterización molecular empleando la técnica de ribotipificación automatizada, permitió la identificación de 11 cepas nativas de B. thuringiensis. La variedad de ribotipos encontrados refleja la heterogeneidad genética de B. thuringiensis en la muestra examinada.


Bacillus thuringiensis is a Gram positive spore-forming bacteria of the B. cereus group, that produces δ-endotoxins, encoded mainly by cry genes, with pathogenic specific activity against some insect larvae. This property has been used in products applied to the control of Hylesia metabus, a pest known as “palometa peluda” that affects living population in the northeast region of Venezuela. In the Venezuelan Center for Culture Collections we have initiated the construction of a collection of B. thuringiensis native strains isolated from soils and H. metabus death larvae that could be applied in pest control. The use of selective growth conditions, biochemical tests and detection of parasporal inclusions, followed by ribotyping methods, allowed the identification of 11 B. thuringiensis native strains. Variety of ribotypes shows the genetic heterogeneity of B. thuringiensis identified.

10.
Braz. j. microbiol ; Braz. j. microbiol;41(4): 966-977, Oct.-Dec. 2010. ilus, tab
Artículo en Inglés | LILACS | ID: lil-595737

RESUMEN

Little information about Shigella responsible for foodborne shigellosis is available in Brazil. The present study aimed to investigate the antimicrobial resistance and PCR-ribotyping patterns of Shigella isolates responsible for foodborne outbreaks occurred in Rio Grande do Sul State (RS), Southern Brazil in the period between 2003 and 2007. Shigella strains (n=152) were isolated from foods and fecal samples of victims of shigellosis outbreaks investigated by the Surveillance Service. Identification of the strains at specie level indicated that 71.1 percent of them were S. flexneri, 21.5 percent S. sonnei, and 0.7 percent S. dysenteriae. Ten strains (6.7 percent) were identified only as Shigella spp. An increasing occurrence of S. sonnei was observed after 2004. Most of the strains were resistant to streptomycin (88.6 percent), followed by ampicillin (84.6 percent), and sulfamethoxazole/trimethoprim (80.5 percent). Resistant strains belonged to 73 patterns, and pattern A (resistance to ampicillin, sulfamethoxazole/trimethoprim, tetracycline, streptomycin, chloramphenicol, and intermediate resistance to kanamycin) grouped the largest number of isolates (n=36). PCR-ribotyping identified three banding patterns (SH1, SH2, and SH3). SH1 grouped all S. flexneri and SH2 grouped all S. sonnei. The S. dysenteriae strain belonged to group SH3. According to the results, several Shigella isolates shared the same PCR-rybotyping banding pattern and the same resistance profile, suggesting that closely related strains were responsible for the outbreaks. However, other molecular typing methods need to be applied to confirm the clonal relationship of these isolates.

11.
Braz J Microbiol ; 41(4): 966-77, 2010 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24031576

RESUMEN

Little information about Shigella responsible for foodborne shigellosis is available in Brazil. The present study aimed to investigate the antimicrobial resistance and PCR-ribotyping patterns of Shigella isolates responsible for foodborne outbreaks occurred in Rio Grande do Sul State (RS), Southern Brazil in the period between 2003 and 2007. Shigella strains (n=152) were isolated from foods and fecal samples of victims of shigellosis outbreaks investigated by the Surveillance Service. Identification of the strains at specie level indicated that 71.1% of them were S. flexneri, 21.5% S. sonnei, and 0.7% S. dysenteriae. Ten strains (6.7%) were identified only as Shigella spp. An increasing occurrence of S. sonnei was observed after 2004. Most of the strains were resistant to streptomycin (88.6%), followed by ampicillin (84.6%), and sulfamethoxazole/trimethoprim (80.5 %). Resistant strains belonged to 73 patterns, and pattern A (resistance to ampicillin, sulfamethoxazole/trimethoprim, tetracycline, streptomycin, chloramphenicol, and intermediate resistance to kanamycin) grouped the largest number of isolates (n=36). PCR-ribotyping identified three banding patterns (SH1, SH2, and SH3). SH1 grouped all S. flexneri and SH2 grouped all S. sonnei. The S. dysenteriae strain belonged to group SH3. According to the results, several Shigella isolates shared the same PCR-rybotyping banding pattern and the same resistance profile, suggesting that closely related strains were responsible for the outbreaks. However, other molecular typing methods need to be applied to confirm the clonal relationship of these isolates.

12.
Artículo en Inglés | VETINDEX | ID: vti-444597

RESUMEN

Little information about Shigella responsible for foodborne shigellosis is available in Brazil. The present study aimed to investigate the antimicrobial resistance and PCR-ribotyping patterns of Shigella isolates responsible for foodborne outbreaks occurred in Rio Grande do Sul State (RS), Southern Brazil in the period between 2003 and 2007. Shigella strains (n=152) were isolated from foods and fecal samples of victims of shigellosis outbreaks investigated by the Surveillance Service. Identification of the strains at specie level indicated that 71.1% of them were S. flexneri, 21.5% S. sonnei, and 0.7% S. dysenteriae. Ten strains (6.7%) were identified only as Shigella spp. An increasing occurrence of S. sonnei was observed after 2004. Most of the strains were resistant to streptomycin (88.6%), followed by ampicillin (84.6%), and sulfamethoxazole/trimethoprim (80.5 %). Resistant strains belonged to 73 patterns, and pattern A (resistance to ampicillin, sulfamethoxazole/trimethoprim, tetracycline, streptomycin, chloramphenicol, and intermediate resistance to kanamycin) grouped the largest number of isolates (n=36). PCR-ribotyping identified three banding patterns (SH1, SH2, and SH3). SH1 grouped all S. flexneri and SH2 grouped all S. sonnei. The S. dysenteriae strain belonged to group SH3. According to the results, several Shigella isolates shared the same PCR-rybotyping banding pattern and the same resistance profile, suggesting that closely related strains were responsible for the outbreaks. However, other molecular typing methods need to be applied to confirm the clonal relationship of these isolates.

13.
Braz. j. infect. dis ; Braz. j. infect. dis;12(5): 430-437, Oct. 2008. tab, ilus
Artículo en Inglés | LILACS | ID: lil-505358

RESUMEN

Forty-five Haemophilus influenzae strains isolated from patients were characterized based on biochemical characteristics. Their capsular types were determined by polymerase chain reaction (PCR); they were compared, using two molecular methods [ribotyping with a specific DNA probe amplified from the 16S rDNA region from H. influenzae and through restriction fragment length polymorphism (RLFP) of an amplified 16S DNA region]. The strains were better discriminated by the ribotyping technique that used the 16S probe and by the combination of both techniques. Biotypes I and IV were the most common, followed by biotypes VI, VIII and III. Biotypes II and VII were not found. Most of the capsular samples were nontypable (89 percent), with capsular types a and b found in 2 and 9 percent of the samples, respectively. We concluded that there is a very close genetic identity among pathogenic and non-pathogenic strains.


Asunto(s)
Humanos , Técnicas de Tipificación Bacteriana/métodos , ADN Bacteriano/análisis , ADN Ribosómico/análisis , Haemophilus influenzae/clasificación , /análisis , Haemophilus influenzae/genética , Haemophilus influenzae/aislamiento & purificación , Reacción en Cadena de la Polimerasa , Polimorfismo de Longitud del Fragmento de Restricción , Ribotipificación , Serotipificación
14.
Mem. Inst. Oswaldo Cruz ; 102(7): 827-832, Nov. 2007. ilus, graf, tab
Artículo en Inglés | LILACS | ID: lil-470350

RESUMEN

PCR analysis of 16S-23S internal transcribed spacer (PCR ribotyping) and tRNA intergenic spacer (tDNA-PCR) were evaluated for their effectiveness in identification of clinical strains of Klebsiella pneumoniae and differentiation with related species. For this purpose both methods were applied to forty-three clinical isolates biochemically identified as K. pneumoniae subsp. pneumoniae isolated from patients clinical specimens attended at five hospitals in three Brazilian cities. References strains of K. pneumoniae subsp. pneumoniae, K. pneumoniae subsp. ozaenae, K. oxytoca, K. planticola and Enterobacter aerogenes were also analyzed. Both PCR methods showed specific patterns for each species. A conserved PCR ribotype pattern was observed for all clinical K. pneumoniae isolates, while differing from other related analyzed species. tDNA-PCR revealed five distinct patterns among the K. pneumoniae clinical isolates studied, demonstrating a predominant group with 90,6 percent of isolates presenting the same pattern of K. pneumoniae type strain. Both PCR-based methods were not able to differentiate K. pneumoniae subspecies. On the basis of the results obtained, both methods were efficient to differentiate the Klebsiella species analyzed, as well as E. aerogenes. Meanwhile tDNA-PCR revealed different tRNA arrangements in K. pneumoniae, suggesting intra-species heterogeneity of their genome organization, the polymorphism of the intergenic spacers between 16S and 23S rRNA genes appears to be highly conserved whithin K. pneumoniae clinical isolates, showing that PCR ribotyping can be an useful tool for identification of K. pneumoniae isolates.


Asunto(s)
ADN Bacteriano/genética , ADN Intergénico/genética , Klebsiella pneumoniae/genética , Ribotipificación/métodos , Klebsiella pneumoniae/clasificación , Klebsiella pneumoniae/aislamiento & purificación , Reacción en Cadena de la Polimerasa , Reproducibilidad de los Resultados , /genética , /genética
15.
Mem. Inst. Oswaldo Cruz ; 102(5): 587-592, Aug. 2007. tab, ilus
Artículo en Inglés | LILACS | ID: lil-458626

RESUMEN

Ribotyping and virulence markers has been used to investigate 68 Yersinia pseudotuberculosis strains of serogroups O:1a and O:3. The strains were isolated from clinical material obtained from healthy and sick animals in the Southern region of Brazil. Ribotypes were identified by double digestion of extracted DNA with the restriction endonucleases SmaI and PstI, separation by electrophoresis and hybridization with a digoxigenin-labeled cDNA probe. The presence of the chromosomal virulence marker genes inv, irp1, irp2, psn, ybtE, ybtP-ybtQ, and ybtX-ybtS, of the IS100 insertion sequence, and of the plasmid gene lcrF was detected by polymerase chain reaction. The strains were grouped into four distinct ribotypes, all of them comprising several strains. Ribotypes 1 and 4 presented distinct profiles, with 57.3 percent genetic similarity, ribotypes 2 and 3 presented 52.5 percent genetic similarity, and genetic similarity was 45 percent between these two groups (1/4 and 2/3). All strains possessed the inv, irp1, and irp2 genes. Additionally, strains of serogroup O:1a carried psn, ybtE, ybtP-ybtQ, ybtX-ybtS, and IS100. As expected lcrF was only detected in strains harboring the virulence plasmid. These data demonstrate the presence of Y. pseudotuberculosis strains harboring genotypic virulence markers in the livestock from Southern Brazil and that the dissemination of these bacteria may occur between herds.


Asunto(s)
Animales , Islas Genómicas/genética , Plásmidos/genética , Ribotipificación/métodos , Factores de Virulencia/genética , Yersinia pseudotuberculosis/patogenicidad , Brasil , ADN Bacteriano/química , ADN Bacteriano/genética , Electroforesis en Gel de Campo Pulsado , Marcadores Genéticos/genética , Reacción en Cadena de la Polimerasa , Factores de Virulencia/química , Virulencia/genética , Yersinia pseudotuberculosis/clasificación , Yersinia pseudotuberculosis/genética
16.
Rev. Inst. Adolfo Lutz ; 59(1/2): e35054, 2000. ilus, tab
Artículo en Portugués | LILACS, Coleciona SUS, Sec. Est. Saúde SP, CONASS, SESSP-IALPROD, Sec. Est. Saúde SP, SESSP-IALACERVO | ID: lil-303617

RESUMEN

Foram analisadas amostras de água e de dializados coletados de diferentes pontos do sistema de hemodiálise de um Centro de Hemodiálise de um Hospital de Campinas, Säo Paulo, Brasil, após um surto de bacteriemia ocorrido em setembro de 1996. As amostras foram submetidas à contagem de bactérias heterotróficas e pesquisa de coliformes totais, assim como foram realizadas as hemoculturas dos pacientes com bacteriemia. As cepas isoladas e identificadas com Pseudomonas aeruginosa foram submetidas à sorotipagem e à piocinotipagem e, naquelas pertecentes ao mesmo sorotipo e piocinotipo, procurou-se determinar o perfil de sensibilidade aos agentes antimicrobianos e o ribotipo. Quanto à pesquisa de Pseudomonas, 80(por cento) das amostras correspondentes à segunda coleta foram positivas e em todas as amostras referentes à terceira coleta foram isoladas Pseudomonas aeruginosa ou Bulkholderia cepacia. Apenas uma cepa de P.aeruginosa de água pertencia aos mesmos sorotipos (O15) e piocinotipo (P10) daqueles obtidos dos pacientes. A compatibilidade genética das amostras das duas origens, verificada pela ribotipagem, sugere um veículo comum na propagaçäo da infecçäo. (AU)


Between September 11 and 20, 1996, an outbreak of bacteremia occurred in patients undergoing hemodialysis at one dialysis center in Campinas, São Paulo, Brazil. Water and dialysate samples as well asblood samples from patients with bacteremia were collected for bacteriological analysis. All Pseudomonasaeruginosa strains were serotyped and pyocin-typed. P. aeruginosa strains belonging to the same serotype(O15) and pyocin type (P10) were submitted to antimicrobial susceptibility testing and to ribotyping using two restriction enzymes, EcoRI and BamHI. The high concentrations of bacteria detected in all hemodialyzers and their heavy rate of contamination (86.7%) by Pseudomonas aeruginosa or Burkholderia cepacia showed that this dialysis center was operating in inadequate conditions. One strain of P. aeruginosa isolated from hemodialyzer and the strains recovered from blood cultures of patients showed similar phenotypical and genetic traits which suggest a common source of infection in this oubreak. We report the potential risk forpatients undergoing hemodialysis to acquire infections due to the inadequate practice of reusing disposabledialyzers during the reprocessing procedures. (AU)


Asunto(s)
Pseudomonas aeruginosa , Infecciones por Pseudomonas , Serotipificación , Brotes de Enfermedades , Técnicas de Tipificación Bacteriana , Diálisis Renal , Bacteriemia , Hospitales
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