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1.
J Agric Food Chem ; 68(35): 9475-9487, 2020 Sep 02.
Artículo en Inglés | MEDLINE | ID: mdl-32806108

RESUMEN

n-Butyl acetate is an important food additive commonly produced via concentrated sulfuric acid catalysis or immobilized lipase catalysis of butanol and acetic acid. Compared with chemical methods, an enzymatic approach is more environmentally friendly; however, it incurs a higher cost due to lipase production. In vivo biosynthesis via metabolic engineering offers an alternative to produce n-butyl acetate. This alternative combines substrate production (butanol and acetyl-coenzyme A (acetyl-CoA)), alcohol acyltransferase expression, and esterification reaction in one reactor. The alcohol acyltransferase gene ATF1 from Saccharomyces cerevisiae was introduced into Clostridium beijerinckii NCIMB 8052, enabling it to directly produce n-butyl acetate from glucose without lipase addition. Extractants were compared and adapted to realize glucose fermentation with in situ n-butyl acetate extraction. Finally, 5.57 g/L of butyl acetate was produced from 38.2 g/L of glucose within 48 h, which is 665-fold higher than that reported previously. This demonstrated the potential of such a metabolic approach to produce n-butyl acetate from biomass.


Asunto(s)
Acetatos/metabolismo , Clostridium beijerinckii/genética , Clostridium beijerinckii/metabolismo , Biomasa , Clostridium beijerinckii/crecimiento & desarrollo , Fermentación , Glucosa/metabolismo , Ingeniería Metabólica , Saccharomyces cerevisiae/genética , Saccharomyces cerevisiae/metabolismo
2.
Sci Rep ; 10(1): 8695, 2020 05 26.
Artículo en Inglés | MEDLINE | ID: mdl-32457521

RESUMEN

The development of new methods capable of more realistic modeling of microbial communities necessitates that their results be quantitatively comparable with experimental findings. In this research, a new integrated agent and constraint based modeling framework abbreviated ACBM has been proposed that integrates agent-based and constraint-based modeling approaches. ACBM models the cell population in three-dimensional space to predict spatial and temporal dynamics and metabolic interactions. When used to simulate the batch growth of C. beijerinckii and two-species communities of F. prausnitzii and B. adolescent., ACBM improved on predictions made by two previous models. Furthermore, when transcriptomic data were integrated with a metabolic model of E. coli to consider intracellular constraints in the metabolism, ACBM accurately predicted growth rate, half-rate constant, and concentration of biomass, glucose, and acidic products over time. The results also show that the framework was able to predict the metabolism changes in the early stationary compared to the log phase. Finally, ACBM was implemented to estimate starved cells under heterogeneous feeding and it was concluded that a percentage of cells are always subject to starvation in a bioreactor with high volume.


Asunto(s)
Microbiota , Modelos Biológicos , Interfaz Usuario-Computador , Técnicas de Cultivo Celular por Lotes , Bifidobacterium adolescentis/crecimiento & desarrollo , Clostridium beijerinckii/crecimiento & desarrollo , Faecalibacterium prausnitzii/crecimiento & desarrollo
3.
Molecules ; 24(13)2019 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-31261835

RESUMEN

Microbial fuel cells offer a technology for simultaneous biomass degradation and biological electricity generation. Microbial fuel cells have the ability to utilize a wide range of biomass including carbohydrates, such as starch. Sago hampas is a starchy biomass that has 58% starch content. With this significant amount of starch content in the sago hampas, it has a high potential to be utilized as a carbon source for the bioelectricity generation using microbial fuel cells by Clostridium beijerinckii SR1. The maximum power density obtained from 20 g/L of sago hampas was 73.8 mW/cm2 with stable cell voltage output of 211.7 mV. The total substrate consumed was 95.1% with the respect of 10.7% coulombic efficiency. The results obtained were almost comparable to the sago hampas hydrolysate with the maximum power density 56.5 mW/cm2. These results demonstrate the feasibility of solid biomass to be utilized for the power generation in fuel cells as well as high substrate degradation efficiency. Thus, this approach provides a promising way to exploit sago hampas for bioenergy generation.


Asunto(s)
Arecaceae/química , Fuentes de Energía Bioeléctrica/microbiología , Clostridium beijerinckii/crecimiento & desarrollo , Almidón/química , Biomasa , Estudios de Factibilidad , Hidrólisis
4.
Sci Rep ; 7(1): 12759, 2017 10 06.
Artículo en Inglés | MEDLINE | ID: mdl-28986542

RESUMEN

Recent efforts to combat increasing greenhouse gas emissions include their capture into advanced biofuels, such as butanol. Traditionally, biobutanol research has been centered solely on its generation from sugars. Our results show partial re-assimilation of CO2 and H2 by n-butanol-producer C. beijerinckii. This was detected as synchronous CO2/H2 oscillations by direct (real-time) monitoring of their fermentation gasses. Additional functional analysis demonstrated increased total carbon recovery above heterotrophic values associated to mixotrophic assimilation of synthesis gas (H2, CO2 and CO). This was further confirmed using 13C-Tracer experiments feeding 13CO2 and measuring the resulting labeled products. Genome- and transcriptome-wide analysis revealed transcription of key C-1 capture and additional energy conservation genes, including partial Wood-Ljungdahl and complete reversed pyruvate ferredoxin oxidoreductase / pyruvate-formate-lyase-dependent (rPFOR/Pfl) pathways. Therefore, this report provides direct genetic and physiological evidences of mixotrophic inorganic carbon-capture by C. beijerinckii.


Asunto(s)
1-Butanol/metabolismo , Carbono/metabolismo , Clostridium beijerinckii/metabolismo , Dióxido de Carbono/metabolismo , Isótopos de Carbono , Clostridium beijerinckii/genética , Clostridium beijerinckii/crecimiento & desarrollo , Electrones , Metabolismo Energético , Fermentación , Perfilación de la Expresión Génica , Genes Bacterianos , Hidrógeno/metabolismo , Cinética , Espectroscopía de Resonancia Magnética , Modelos Biológicos , Nitritos/metabolismo , Factores de Tiempo , Transcripción Genética , Transcriptoma/genética
5.
Appl Microbiol Biotechnol ; 101(21): 8041-8052, 2017 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-28932978

RESUMEN

Apple pomace was studied as a possible raw material for biobutanol production. Five different soft physicochemical pretreatments (autohydrolysis, acids, alkalis, organic solvents and surfactants) were compared in a high-pressure reactor, whose working parameters (temperature, time and reagent concentration) were optimised to maximise the amount of simple sugars released and to minimise inhibitor generation. The pretreated biomass was subsequently subjected to a conventional enzymatic treatment to complete the hydrolysis. A thermal analysis (DSC) of the solid biomass indicated that lignin was mainly degraded during the enzymatic treatment. The hydrolysate obtained with the surfactant polyethylene glycol 6000 (PEG 6000) (1.96% w/w) contained less inhibitors than any other pretreatment, yet providing 42 g/L sugars at relatively mild conditions (100 °C, 5 min), and was readily fermented by Clostridium beijerinckii CECT 508 in 96 h (3.55 g/L acetone, 9.11 g/L butanol, 0.26 g/L ethanol; 0.276 gB/gS yield; 91% sugar consumption). Therefore, it is possible to optimise pretreatment conditions of lignocellulosic apple pomace to reduce inhibitor concentrations in the final hydrolysate and perform successful ABE fermentations without the need of a detoxification stage.


Asunto(s)
Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Residuos Industriales , Lignina/metabolismo , Malus/metabolismo , Azúcares/aislamiento & purificación , Reactores Biológicos/microbiología , Clostridium beijerinckii/crecimiento & desarrollo , Fermentación , Hidrólisis , Temperatura
6.
J Ind Microbiol Biotechnol ; 43(6): 741-50, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-27021843

RESUMEN

Degeneration of solventogenic Clostridium strains is one of the major barriers in bio-butanol production. A degenerated Clostridium beijerinckii NCIMB 8052 strain (DG-8052) was obtained without any genetic manipulation. Supplementation of CaCO3 to fermentation medium could partially recover metabolism of DG-8052 by more than 50 % increase of cell growth and solvent production. This study investigated the protein expression profile of DG-8052 and its response to CaCO3 treatment. Compared with WT-8052, the lower expressed proteins were responsible for disruption of RNA secondary structures and DNA repair, sporulation, signal transduction, transcription regulation, and membrane transport in DG-8052. Interestingly, accompanied with the decreased glucose utilization and lower solvent production, there was a decreased level of sigma-54 modulation protein which may indicate that the level of sigma-54 activity may be associated with the observed strain degeneration. For the addition of CaCO3, proteomic and biochemical study results revealed that besides buffer capacity, Ca(2+) could stabilize heat shock proteins, increase DNA synthesis and replication, and enhance expression of solventogenic enzymes in DG-8052, which has a similar contribution in WT-8052.


Asunto(s)
Calcio/química , Clostridium beijerinckii/crecimiento & desarrollo , Proteómica , Butanoles/metabolismo , Carbonato de Calcio/metabolismo , Clostridium beijerinckii/genética , Medios de Cultivo/química , Fermentación , Microbiología Industrial , Transcriptoma
7.
J Biosci Bioeng ; 122(3): 364-9, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-27012376

RESUMEN

This article aims to validate the use of calorimetry to measure the growth of anaerobic microbes. It has been difficult to monitor the growth of strict anaerobes while maintaining optimal growth conditions. Traditionally, optical density and ATP concentration are usually used as measures of the growth of anaerobic microbes. However, to take these measurements it is necessary to extract an aliquot of the culture, which can be difficult while maintaining anaerobic conditions. In this study, calorimetry was used to continuously and nondestructively measure the heat generated by the growth of anaerobic microbes as a function of time. Clostridium acetobutylicum, Clostridium beijerinckii, and Clostridium cellulovorans were used as representative anaerobic microbes. Using a multiplex isothermal calorimeter, we observed that peak time (tp) of C. acetobutylicum heat evolution increased as the inoculation rate decreased. This strong correlation between the inoculation rate and tp showed that it was possible to measure the growth rate of anaerobic microbes by calorimetry. Overall, our results showed that there is a very good correlation between heat evolution and optical density/ATP concentration, validating the use of the method.


Asunto(s)
Bacterias Anaerobias/crecimiento & desarrollo , Bacterias Anaerobias/metabolismo , Calorimetría/métodos , Calor , Adenosina Trifosfato/metabolismo , Clostridium acetobutylicum/crecimiento & desarrollo , Clostridium acetobutylicum/metabolismo , Clostridium beijerinckii/crecimiento & desarrollo , Clostridium beijerinckii/metabolismo , Clostridium cellulovorans/crecimiento & desarrollo , Clostridium cellulovorans/metabolismo
8.
J Biosci Bioeng ; 121(6): 697-700, 2016 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-26718336

RESUMEN

We investigated butanol recovery by pervaporation separation, using a silicalite-1 membrane, from batch cultures of butanol-producing Clostridium beijerinckii SBP2 grown on sweet sorghum juice as a fermentation medium. The pervaporation system yielded 73% (w/v) butanol from intact feed cultures containing 1% (w/v) butanol, and had a butanol permeation flux of 11 g m(-2) h(-1). Upon neutralization and activated charcoal treatment of the feed cultures, butanol yield and total flux increased to 82% (w/v) and 40 g m(-2) h(-1), respectively. This system is applicable to refining processes for practical biobutanol production from a promising energy crop, sweet sorghum.


Asunto(s)
1-Butanol/aislamiento & purificación , 1-Butanol/metabolismo , Acetona/metabolismo , Clostridium beijerinckii/metabolismo , Etanol/metabolismo , Fermentación , Membranas Artificiales , Sorghum/química , Técnicas de Cultivo Celular por Lotes , Carbón Orgánico , Clostridium beijerinckii/crecimiento & desarrollo , Volatilización
9.
Biotechnol Lett ; 38(4): 611-7, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-26721235

RESUMEN

OBJECTIVES: Most butanol-producing strains of Clostridium prefer glucose over xylose, leading to a slower butanol production from lignocellulose hydrolysates. It is therefore beneficial to find and use a strain that can simultaneously use both glucose and xylose. RESULTS: Clostridium beijerinckii SE-2 strain assimilated glucose and xylose simultaneously and produced ABE (acetone/butanol/ethanol). The classic diauxic growth behavior was not seen. Similar rates of sugar consumption (4.44 mM glucose h(-1) and 6.66 mM xylose h(-1)) were observed suggesting this strain could use either glucose or xylose as the substrate and it has a similar capability to degrade these two sugars. With different initial glucose:xylose ratios, glucose and xylose were consumed simultaneously at rates roughly proportional to their individual concentrations in the medium, leading to complete utilization of both sugars at the same time. CONCLUSIONS: ABE production profiles were similar on different substrates. Transcriptional studies on the effect of glucose and xylose supplementation, however, suggests a clear glucose inhibition on xylose metabolism-related genes is still present.


Asunto(s)
Acetona/metabolismo , Butanoles/metabolismo , Clostridium beijerinckii/crecimiento & desarrollo , Etanol/metabolismo , Glucosa/farmacología , Xilosa/farmacología , Proteínas Bacterianas/genética , Clostridium beijerinckii/metabolismo , Fermentación , Regulación Bacteriana de la Expresión Génica , Transcripción Genética/efectos de los fármacos
10.
Prep Biochem Biotechnol ; 46(2): 141-9, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-25569768

RESUMEN

Corncob is a potential feedstock in Thailand that can be used for fermentable sugar production through dilute sulfuric acid pretreatment and enzymatic hydrolysis. To recover high amounts of monomeric sugars from corncob, the sulfuric pretreatment conditions were optimized by using response surface methodology with three independent variables: sulfuric acid concentration, temperature, and time. The highest response of total sugars, 48.84 g/L, was found at 122.78°C, 4.65 min, and 2.82% (v/v) H2SO4. With these conditions, total sugars from the confirmation experiment were 46.29 g/L, with 5.51% error from the predicted value. The hydrolysate was used as a substrate for acetone-butanol-ethanol fermentation to evaluate its potential for microbial growth. The simultaneous saccharification and fermentation (SSF) showed that C. beijerinckii TISTR 1461 can generate acetone-butanol-ethanol products at 11.64 g/L (5.29 g/L acetone, 6.26 g/L butanol, and 0.09 g/L ethanol) instantly using sugars from the hydrolysed corncob with Novozymes 50013 cellulase enzyme without an overliming process.


Asunto(s)
Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Microbiología Industrial/métodos , Zea mays/química , Acetona/metabolismo , Carbohidratos , Celulasa/química , Celulasa/metabolismo , Clostridium beijerinckii/crecimiento & desarrollo , Etanol/metabolismo , Fermentación , Hidrólisis , Microscopía Electrónica de Rastreo , Tamaño de la Partícula , Ácidos Sulfúricos/química , Difracción de Rayos X
11.
FEMS Microbiol Lett ; 362(19)2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26363015

RESUMEN

Spore-forming solventogenic Clostridium spp. are receiving renewed attention due to their butanol production abilities. However, there is an absence of literature describing the preparation of dense, vigorous and homogeneous seed cultures of Clostridium spp., guaranteeing reproducibility during fermentation. Therefore, we performed a series of growth experiments of Clostridium beijerinckii NCIMB 8052 and its offspring SA-1 to evaluate the influence of inoculum age (harvest time) on the subsequent population's maximum specific growth rate, as a signal of population homogeneity. The organisms were cultivated in Reinforced Clostridial Medium and supplemented sweet sorghum juice. The best inoculum ages coincided with the late-exponential growth phase: between 9 and 11 h in the conditions tested. Additionally, the harvest time was delayed up to 4 h by pre-adapting the seed culture with 0.75 g L(-1) butyric acid. These findings were validated by performing a series of bench-top batch fermentations showcasing reproducibility in growth kinetics with 95% confidence limits. Overall, these experiments allowed us to understand the transient nature of seed cultures of C. beijerinckii NCIMB 8052 and SA-1, while enabling reproducibility and consistent culture performance.


Asunto(s)
Clostridium beijerinckii/crecimiento & desarrollo , Microbiología Industrial/métodos , Butanoles , Medios de Cultivo , Etanol , Fermentación , Cinética , Reproducibilidad de los Resultados
12.
Talanta ; 141: 116-21, 2015 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-25966390

RESUMEN

A new, simple, rapid and selective spectrophotometric method has been developed for detection and estimation of butanol in fermentation broth. The red colored compound, produced during reduction of diquat-dibromide-monohydrate with 2-mercaptoethanol in aqueous solution at high pH (>13), becomes purple on phase transfer to butanol and gives distinct absorption at λ520nm. Estimation of butanol in the fermentation broth has been performed by salting out extraction (SOE) using saturated K3PO4 solution at high pH (>13) followed by absorbance measurement using diquat reagent. Compatibility and optimization of diquat reagent concentration for detection and estimation of butanol concentration in the fermentation broth range was verified by central composite design. A standard curve was constructed to estimate butanol in acetone-ethanol-butanol (ABE) mixture under optimized conditions. The spectrophotometric results for butanol estimation, was found to have 87.5% concordance with the data from gas chromatographic analysis.


Asunto(s)
Acetona/metabolismo , Butanoles/análisis , Clostridium beijerinckii/metabolismo , Etanol/metabolismo , Espectrofotometría/métodos , Butanoles/metabolismo , Clostridium beijerinckii/crecimiento & desarrollo , Fermentación
13.
Prep Biochem Biotechnol ; 45(2): 173-91, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-24678653

RESUMEN

Corncobs pretreated with H2SO4, HNO3, and H3PO4 were compared to evaluate the fermentation ability of Clostridium beijerinckii TISTR 1461 to produce biobutanol via acetone-butanol-ethanol (ABE) fermentation. It was found that the hydrolysate from H3PO4 pretreatment could be used as a substrate without any inhibitor removal methods. However, in terms of sugar yield, it gave the lowest total sugars in both pretreatment and enzymatic hydrolysis. Response surface methodology was applied to optimize enzymatic hydrolysis of the pretreated corncobs. The optimized conditions reduced the consumption of enzymes and hydrolysis time to 7.68 FPU/g biomass and 63.88 hr, respectively, and yielded 51.82 g/L reducing sugars. The Celluclast 1.5 L and Novozyme 188 enzyme ratio were varied to maximize the hydrolyzed sugars. The ABE fermentation, using substrate from phosphoric acid pretreatment of corncobs, with 10 g/L glucose supplementation produced 11.64 g/L of total ABE, which was close to the control experiment using synthetic medium. This study showed that corncobs pretreated with phosphoric acid could potentially be used as a substrate without using a detoxification process.


Asunto(s)
Clostridium beijerinckii/crecimiento & desarrollo , Ácidos Fosfóricos/química , Zea mays/química , Biomasa , Butanoles/metabolismo , Fermentación , beta-Glucosidasa/química
14.
Appl Biochem Biotechnol ; 174(8): 2801-17, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25374139

RESUMEN

Phanerochaete chrysosporium was evaluated for cellulase and hemicellulase production using various agricultural wastes under solid state fermentation. Optimization of various environmental factors, type of substrate, and medium composition was systematically investigated to maximize the production of enzyme complex. Using grass powder as a carbon substrate, maximum activities of endoglucanase (188.66 U/gds), exoglucanase (24.22 U/gds), cellobiase (244.60 U/gds), filter paperase (FPU) (30.22 U/gds), glucoamylase (505.0 U/gds), and xylanase (427.0 U/gds) were produced under optimized conditions. The produced crude enzyme complex was employed for hydrolysis of untreated and mild acid pretreated rice husk. The maximum amount of reducing sugar released from enzyme treated rice husk was 485 mg/g of the substrate. Finally, the hydrolysates of rice husk were used for hydrogen production by Clostridium beijerinckii. The maximum cumulative H2 production and H2 yield were 237.97 mL and 2.93 mmoL H2/g of reducing sugar, (or 2.63 mmoL H2/g of cellulose), respectively. Biohydrogen production performance obtained from this work is better than most of the reported results from relevant studies. The present study revealed the cost-effective process combining cellulolytic enzymes production under solid state fermentation (SSF) and the conversion of agro-industrial residues into renewable energy resources.


Asunto(s)
Biocombustibles , Celulasa/química , Clostridium beijerinckii/crecimiento & desarrollo , Proteínas Fúngicas/química , Glicósido Hidrolasas/química , Hidrógeno/metabolismo , Phanerochaete/enzimología , Residuos Sólidos , Agricultura , Eliminación de Residuos Sanitarios/métodos
15.
J Ind Microbiol Biotechnol ; 41(10): 1505-16, 2014 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25085743

RESUMEN

Fermentation of liquid hot water (LHW) pretreated Miscanthus giganteus (MG) by Clostridium beijerinckii NCIMB 8052 was investigated towards understanding the toxicity of lignocellulose-derived inhibitors to solventogenic Clostridium species vis-à-vis butanol production. While C. beijerinckii NCIMB 8052 did not grow in undiluted MG hydrolysate-based fermentation medium, supplementation of this medium with Calcium carbonate enabled the growth of C. beijerinckii NCIMB 8052 and production of butanol. Using high-performance liquid chromatography (HPLC) and spectrophotometric assays, LHW-pretreated MG was found to contain lignocellulose-derived microbial inhibitory compounds; some of which were transformed by exponentially growing C. beijerinckii to less inhibitory compounds during fermentation. Contrary to all expectations, the reduction product of furfural, furfuryl alcohol, inhibited butanol production by C. beijerinckii by more than 16 %. Collectively, these results provide new insights into why lignocellulosic biomass hydrolysates are recalcitrant to fermentation to biofuels and chemicals.


Asunto(s)
Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Lignina/metabolismo , Poaceae/química , Acetona/metabolismo , Benzaldehídos/química , Benzaldehídos/metabolismo , Biocombustibles , Carbonato de Calcio/química , Clostridium beijerinckii/crecimiento & desarrollo , Ácidos Cumáricos/química , Ácidos Cumáricos/metabolismo , Medios de Cultivo , Etanol/metabolismo , Fermentación , Furaldehído/química , Furaldehído/metabolismo , Concentración de Iones de Hidrógeno , Hidrólisis , Lignina/química , Preparaciones de Plantas/química , Preparaciones de Plantas/metabolismo
16.
Microb Cell Fact ; 13(1): 92, 2014 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-25023325

RESUMEN

BACKGROUND: Butanol is an industrial commodity and also considered to be a more promising gasoline substitute compared to ethanol. Renewed attention has been paid to solvents (acetone, butanol and ethanol) production from the renewable and inexpensive substrates, for example, lignocellulose, on account of the depletion of oil resources, increasing gasoline prices and deteriorating environment. Limited to current tools for genetic manipulation, it is difficult to develop a genetically engineered microorganism with combined ability of lignocellulose utilization and solvents production. Mixed culture of cellulolytic microorganisms and solventogenic bacteria provides a more convenient and feasible approach for ABE fermentation due to the potential for synergistic utilization of the metabolic pathways of two organisms. But few bacteria pairs succeeded in producing biobutanol of high titer or high productivity without adding butyrate. The aim of this work was to use Clostridium cellulovorans 743B to saccharify lignocellulose and produce butyric acid, instead of adding cellulase and butyric acid to the medium, so that the soluble sugars and butyric acid generated can be subsequently utilized by Clostridium beijerinckii NCIMB 8052 to produce butanol in one pot reaction. RESULTS: A stable artificial symbiotic system was constructed by co-culturing a celluloytic, anaerobic, butyrate-producing mesophile (C. cellulovorans 743B) and a non-celluloytic, solventogenic bacterium (C. beijerinckii NCIMB 8052) to produce solvents by consolidated bioprocessing (CBP) with alkali extracted deshelled corn cobs (AECC), a low-cost renewable feedstock, as the sole carbon source. Under optimized conditions, the co-culture degraded 68.6 g/L AECC and produced 11.8 g/L solvents (2.64 g/L acetone, 8.30 g/L butanol and 0.87 g/L ethanol) in less than 80 h. Besides, a real-time PCR assay based on the 16S rRNA gene sequence was performed to study the dynamics of the abundance of each strain during the co-culturing process, which figured out the roles of each strain at different periods in the symbiosis. CONCLUSION: Our work illustrated the great potential of artificial symbiosis in biofuel production from lignocellulosic biomass by CBP. The dynamics of the abundance of C. beijerinckii and C. cellulovorans revealed mechanisms of cooperation and competition between the two strains during the co-culture process.


Asunto(s)
1-Butanol/metabolismo , Acetona/metabolismo , Clostridium beijerinckii/metabolismo , Clostridium cellulovorans/metabolismo , Etanol/metabolismo , Microbiología Industrial/métodos , Zea mays/microbiología , Clostridium beijerinckii/crecimiento & desarrollo , Clostridium cellulovorans/crecimiento & desarrollo , Técnicas de Cocultivo , Fermentación , Simbiosis , Zea mays/química
17.
Appl Microbiol Biotechnol ; 98(14): 6511-21, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-24839212

RESUMEN

Lignocellulose-derived microbial inhibitors such as furfural and 5-hydroxymethyl furfural adversely affect fermentation of lignocellulosic biomass hydrolysates to fuels and chemicals due to their toxicity on fermenting microbes. To harness the potential of lignocellulose as a cheap source of fermentable sugars, in situ detoxification of furfural and other lignocellulose-derived microbial inhibitors is essential. To enhance in situ detoxification and tolerance of furfural by Clostridium beijerinckii NCIMB 8052 during acetone-butanol-ethanol (ABE) fermentation, the effect of glycerol on NADH/NADPH generation and ABE production by furfural (4, 5, and 6 g/L)-challenged cultures was investigated in this study. In all instances, beneficial outcomes were observed. For example, the fermentation medium supplemented with glycerol and subjected to 5 g/L furfural elicited up to 1.8- and 3-fold increases, respectively, in NADH and NADPH levels in C. beijerinckii 8052 relative to the control culture. These critical changes are the likely underpinnings for the glycerol-mediated 2.3-fold increase in the rate of detoxification of 5 g/L furfural, substrate consumption, and ABE production compared to the unsupplemented medium. Collectively, these results demonstrate that increased intracellular NADH/NADPH in C. beijerinckii 8052 due to glycerol utilization engenders favorable effects on many aspects of cellular metabolism, including enhanced furfural reduction and increased ABE production.


Asunto(s)
Butanoles/metabolismo , Clostridium beijerinckii/metabolismo , Medios de Cultivo/química , Furaldehído/metabolismo , Glicerol/metabolismo , Acetona/metabolismo , Biotransformación , Clostridium beijerinckii/crecimiento & desarrollo , Etanol/metabolismo , Fermentación , NAD/metabolismo , NADP/metabolismo
18.
Microbiology (Reading) ; 159(Pt 12): 2558-2570, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24068240

RESUMEN

Production of butanol by solventogenic clostridia is controlled through metabolic regulation of the carbon flow and limited by its toxic effects. To overcome cell sensitivity to solvents, stress-directed evolution methodology was used three decades ago on Clostridium beijerinckii NCIMB 8052 that spawned the SA-1 strain. Here, we evaluated SA-1 solventogenic capabilities when growing on a previously validated medium containing, as carbon- and energy-limiting substrates, sucrose and the products of its hydrolysis d-glucose and d-fructose and only d-fructose. Comparative small-scale batch fermentations with controlled pH (pH 6.5) showed that SA-1 is a solvent hyper-producing strain capable of generating up to 16.1 g l(-1) of butanol and 26.3 g l(-1) of total solvents, 62.3 % and 63 % more than NCIMB 8052, respectively. This corresponds to butanol and solvent yields of 0.3 and 0.49 g g(-1), respectively (63 % and 65 % increase compared with NCIMB 8052). SA-1 showed a deficiency in d-fructose transport as suggested by its 7 h generation time compared with 1 h for NCIMB 8052. To potentially correlate physiological behaviour with genetic mutations, the whole genome of SA-1 was sequenced using the Illumina GA IIx platform. PCR and Sanger sequencing were performed to analyse the putative variations. As a result, four errors were confirmed and validated in the reference genome of NCIMB 8052 and a total of 10 genetic polymorphisms in SA-1. The genetic polymorphisms included eight single nucleotide variants, one small deletion and one large insertion that it is an additional copy of the insertion sequence ISCb1. Two of the genetic polymorphisms, the serine threonine phosphatase cbs_4400 and the solute binding protein cbs_0769, may possibly explain some of the observed physiological behaviour, such as rerouting of the metabolic carbon flow, deregulation of the d-fructose phosphotransferase transport system and delayed sporulation.


Asunto(s)
Butanoles/metabolismo , Butanoles/toxicidad , Clostridium beijerinckii/efectos de los fármacos , Clostridium beijerinckii/genética , ADN Bacteriano/genética , Genoma Bacteriano , Análisis de Secuencia de ADN , Carbono/metabolismo , Clostridium beijerinckii/crecimiento & desarrollo , Clostridium beijerinckii/metabolismo , Medios de Cultivo/química , ADN Bacteriano/química , Fructosa/metabolismo , Glucosa/metabolismo , Inhibidores de Crecimiento/toxicidad , Redes y Vías Metabólicas/genética , Datos de Secuencia Molecular , Polimorfismo Genético , Solventes/metabolismo , Solventes/toxicidad
19.
BMC Genomics ; 12: 479, 2011 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-21962126

RESUMEN

BACKGROUND: Clostridium beijerinckii is an important solvent producing microorganism. The genome of C. beijerinckii NCIMB 8052 has recently been sequenced. Although transcriptome structure is important in order to reveal the functional and regulatory architecture of the genome, the physical structure of transcriptome for this strain, such as the operon linkages and transcript boundaries are not well understood. RESULTS: In this study, we conducted a single-nucleotide resolution analysis of the C. beijerinckii NCIMB 8052 transcriptome using high-throughput RNA-Seq technology. We identified the transcription start sites and operon structure throughout the genome. We confirmed the structure of important gene operons involved in metabolic pathways for acid and solvent production in C. beijerinckii 8052, including pta-ack, ptb-buk, hbd-etfA-etfB-crt (bcs) and ald-ctfA-ctfB-adc (sol) operons; we also defined important operons related to chemotaxis/motility, transcriptional regulation, stress response and fatty acids biosynthesis along with others. We discovered 20 previously non-annotated regions with significant transcriptional activities and 15 genes whose translation start codons were likely mis-annotated. As a consequence, the accuracy of existing genome annotation was significantly enhanced. Furthermore, we identified 78 putative silent genes and 177 putative housekeeping genes based on normalized transcription measurement with the sequence data. We also observed that more than 30% of pseudogenes had significant transcriptional activities during the fermentation process. Strong correlations exist between the expression values derived from RNA-Seq analysis and microarray data or qRT-PCR results. CONCLUSIONS: Transcriptome structural profiling in this research provided important supplemental information on the accuracy of genome annotation, and revealed additional gene functions and regulation in C. beijerinckii.


Asunto(s)
Clostridium beijerinckii/genética , Análisis de Secuencia de ARN , Transcriptoma , Clostridium beijerinckii/crecimiento & desarrollo , Regulación Bacteriana de la Expresión Génica , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
20.
Int J Food Microbiol ; 150(1): 59-65, 2011 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-21849216

RESUMEN

In the manufacture of model cheeses, ovine milk was deliberately contaminated with spores of Clostridium beijerinckii INIA 63, a wild isolate from Manchego cheese with late blowing defect, and inoculated with nisin- and lacticin 481-producing Lactococcus lactis subsp. lactis INIA 415 as starter, to test its potential to prevent the late blowing defect, or with L. lactis subsp. lactis INIA 415-2, a spontaneous mutant not producing bacteriocins. Cheeses made individually with the lactococcal strains, without clostridial spores, served as controls. Cheese made with clostridial spores and L. lactis subsp. lactis INIA 415-2 showed late blowing defect after 120days of ripening. Spoilt cheese also showed lower concentrations of lactic acid, and higher levels of acetic, propionic and butyric acids, and of other volatile compounds such as 2-propanol and 1-butanol, than control cheese. In addition, cheese made with the bacteriocin producer did not show any late blowing symptoms, despite its spore counts similar to those of blown cheese, pointing to outgrowth inhibition of C. beijerinckii spores by bacteriocins. Besides, cheese made with the bacteriocin producer showed similar concentrations of lactic acid and volatile compounds than control cheese. Inclusion of L. lactis subsp. lactis INIA 415 in starter cultures seems a feasible method to prevent late blowing defect in cheese without altering its sensory characteristics.


Asunto(s)
Bacteriocinas/farmacología , Queso/microbiología , Clostridium beijerinckii/efectos de los fármacos , 1-Butanol , 2-Propanol , Animales , Bacteriocinas/metabolismo , Clostridium/efectos de los fármacos , Clostridium beijerinckii/clasificación , Clostridium beijerinckii/crecimiento & desarrollo , Clostridium beijerinckii/metabolismo , Técnicas de Cocultivo , Lactococcus lactis/crecimiento & desarrollo , Lactococcus lactis/metabolismo , Leche/microbiología , Nisina , Ovinos , Oveja Doméstica , Esporas Bacterianas/efectos de los fármacos , Esporas Bacterianas/crecimiento & desarrollo , Esporas Bacterianas/metabolismo
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