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1.
Acc Chem Res ; 53(10): 2152-2166, 2020 10 20.
Artículo en Inglés | MEDLINE | ID: mdl-32885957

RESUMEN

Chemically modified oligonucleotides are being developed as a new class of medicines for curing conditions that previously remained untreatable. Three primary classes of therapeutic oligonucleotides are single-stranded antisense oligonucleotides (ASOs), double stranded small interfering RNAs (siRNAs), and oligonucleotides that induce exon skipping. Recently, ASOs, siRNAs, and exon skipping oligonucleotides have been approved for patients with unmet medical needs, and many other candidates are being tested in late stage clinical trials. In coming years, therapeutic oligonucleotides may match the promise of small molecules and antibodies. Interestingly, in the 1980s when we developed chemical methods for synthesizing oligonucleotides, no one would have imagined that these highly charged macromolecules could become future medicines. Indeed, the anionic nature and poor metabolic stability of the natural phosphodiester backbone provided a major challenge for the use of oligonucleotides as therapeutic drugs. Thus, chemical modifications of oligonucleotides were essential in order to improve their pharmacokinetic properties. Keeping this view in mind, my laboratory has developed a series of novel oligonucleotides where one or both nonbridging oxygens in the phosphodiester backbone are replaced with an atom or molecule that introduces molecular properties that enhance biological activity. We followed two complementary approaches. One was the use of phosphoramidites that could act directly as synthons for the solid phase synthesis of oligonucleotide analogues. This approach sometimes was not feasible due to instability of various synthons toward the reagents used during synthesis of oligonucleotides. Therefore, using a complementary approach, we developed phosphoramidite synthons that can be incorporated into oligonucleotides with minimum changes in the solid phase DNA synthesis protocols but contain a handle for generating appropriate analogues postsynthetically.This Account summarizes our efforts toward preparing these types of analogues over the past three decades and discusses synthesis and properties of backbone modified oligonucleotides that originated from the Caruthers' laboratory. For example, by replacing one of the internucleotide oxygens with an acetate group, we obtained so-called phosphonoacetate oligonucleotides that were stable to nucleases and, when delivered as esters, entered into cells unaided. Alternatively oligonucleotides bearing borane phosphonate linkages were found to be RNase H active and compatible with the endogenous RNA induced silencing complex (RISC). Oligonucleotides containing an alkyne group directly linked to phosphorus in the backbone were prepared as well and used to attach molecules such as amino acids and peptides.


Asunto(s)
ADN/química , Fósforo/química , Boranos/química , Foscarnet/química , Oligonucleótidos/química , Organofosfonatos/química , Compuestos Organofosforados/química , Fosfinas/química , Ácido Fosfonoacético/química
2.
Bioorg Chem ; 104: 104224, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32892068

RESUMEN

A series of alkylphosphocholines with foscarnet moiety was synthesized. The structure of these zwitterionic amphiphiles was modified in both polar and non-polar parts of surfactant molecule. Investigations of physicochemical properties are represented by the determination of critical micelle concentration, the surface tension value at the cmc and the surface area per surfactant head group utilising surface tension measurements. Hydrodynamic diameter of surfactant micelles was determined using the dynamic light scattering technique. Alkylphosphocholines exhibit significant cytotoxic, anticandidal (Candida albicans) and antiamoebal (Acanthamoeba spp. T4 genotype) activity. The relationship between the structure, physicochemical properties and biological activity of the tested compounds revealed that lipophilicity has a significant influence on biological activity of the investigated surfactants. More lipophilic alkylphosphocholines with octadecyl chains show cytotoxic activity against cancer cells which is higher than that of the compounds with shorter alkyl chains. The opposite situation was observed in case of anticandidal and antiamoebal activity of these surfactants. The most active compounds were found to have pentadecyl chains. The foscarnet analogue of miltefosine C15-PFA-C showed the highest anticandidal activity. The minimum value of anticandidal activity of this compound is 1,4 µM thus representing the highest anticandidal activity found within the group of alkylphosphocholines.


Asunto(s)
Amebicidas/farmacología , Antifúngicos/farmacología , Antineoplásicos/farmacología , Foscarnet/farmacología , Fosforilcolina/farmacología , Células 3T3 , Acanthamoeba/efectos de los fármacos , Amebicidas/síntesis química , Amebicidas/química , Animales , Antifúngicos/síntesis química , Antifúngicos/química , Antineoplásicos/síntesis química , Antineoplásicos/química , Candida albicans/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Células Cultivadas , Relación Dosis-Respuesta a Droga , Ensayos de Selección de Medicamentos Antitumorales , Foscarnet/química , Humanos , Hidrodinámica , Ratones , Micelas , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Pruebas de Sensibilidad Parasitaria , Fosforilcolina/análogos & derivados , Fosforilcolina/química , Relación Estructura-Actividad , Tensión Superficial
3.
Chem Commun (Camb) ; 53(37): 5139-5142, 2017 May 04.
Artículo en Inglés | MEDLINE | ID: mdl-28435952

RESUMEN

Foscarnet sodium is an antiviral drug for the treatment of CMV retinitis, currently in the form of twice-weekly intravitreal injection. Here we developed foscarnet calcium microcrystals as the drug depot, and using the rabbit model we demonstrated that the injected microcrystals maintained a therapeutically relevant drug concentration in the vitreous for more than 3 months.


Asunto(s)
Antivirales/administración & dosificación , Antivirales/farmacocinética , Retinitis por Citomegalovirus/metabolismo , Foscarnet/administración & dosificación , Foscarnet/farmacocinética , Animales , Antivirales/química , Cristalización , Foscarnet/química , Inyecciones Intravítreas , Modelos Animales , Tamaño de la Partícula , Conejos
4.
ACS Chem Biol ; 11(8): 2158-64, 2016 08 19.
Artículo en Inglés | MEDLINE | ID: mdl-27192549

RESUMEN

HIV-1 reverse transcriptase (RT) catalytically incorporates individual nucleotides into a viral DNA strand complementing an RNA or DNA template strand; the polymerase active site of RT adopts multiple conformational and structural states while performing this task. The states associated are dNTP binding at the N site, catalytic incorporation of a nucleotide, release of a pyrophosphate, and translocation of the primer 3'-end to the P site. Structural characterization of each of these states may help in understanding the molecular mechanisms of drug activity and resistance and in developing new RT inhibitors. Using a 38-mer DNA template-primer aptamer as the substrate mimic, we crystallized an RT/dsDNA complex that is catalytically active, yet translocation-incompetent in crystals. The ability of RT to perform dNTP binding and incorporation in crystals permitted obtaining a series of structures: (I) RT/DNA (P-site), (II) RT/DNA/AZTTP ternary, (III) RT/AZT-terminated DNA (N-site), and (IV) RT/AZT-terminated DNA (N-site)/foscarnet complexes. The stable N-site complex permitted the binding of foscarnet as a pyrophosphate mimic. The Mg(2+) ions dissociated after catalytic addition of AZTMP in the pretranslocated structure III, whereas ions A and B had re-entered the active site to bind foscarnet in structure IV. The binding of foscarnet involves chelation with the Mg(2+) (B) ion and interactions with K65 and R72. The analysis of interactions of foscarnet and the recently discovered nucleotide-competing RT inhibitor (NcRTI) α-T-CNP in two different conformational states of the enzyme provides insights for developing new classes of polymerase active site RT inhibitors.


Asunto(s)
Difosfatos/química , Foscarnet/química , Transcriptasa Inversa del VIH/química , Nucleótidos/química , Inhibidores de la Transcriptasa Inversa/química , Cristalografía por Rayos X , Diseño de Fármacos , Hidrólisis , Conformación Proteica
5.
Biochemistry ; 55(7): 1168-77, 2016 Feb 23.
Artículo en Inglés | MEDLINE | ID: mdl-26836009

RESUMEN

We examined the impact of two clinically approved anti-herpes drugs, acyclovir and Forscarnet (phosphonoformate), on the exonuclease activity of the herpes simplex virus-1 DNA polymerase, UL30. Acyclovir triphosphate and Foscarnet, along with the closely related phosphonoacetic acid, did not affect exonuclease activity on single-stranded DNA. Furthermore, blocking the polymerase active site due to either binding of Foscarnet or phosphonoacetic acid to the E-DNA complex or polymerization of acyclovir onto the DNA also had a minimal effect on exonuclease activity. The inability of the exonuclease to excise acyclovir from the primer 3'-terminus results from the altered sugar structure directly impeding phosphodiester bond hydrolysis as opposed to inhibiting binding, unwinding of the DNA by the exonuclease, or transfer of the DNA from the polymerase to the exonuclease. Removing the 3'-hydroxyl or the 2'-carbon from the nucleotide at the 3'-terminus of the primer strongly inhibited exonuclease activity, although addition of a 2'-hydroxyl did not affect exonuclease activity. The biological consequences of these results are twofold. First, the ability of acyclovir and Foscarnet to block dNTP polymerization without impacting exonuclease activity raises the possibility that their effects on herpes replication may involve both direct inhibition of dNTP polymerization and exonuclease-mediated destruction of herpes DNA. Second, the ability of the exonuclease to rapidly remove a ribonucleotide at the primer 3'-terminus in combination with the polymerase not efficiently adding dNTPs onto this primer provides a novel mechanism by which the herpes replication machinery can prevent incorporation of ribonucleotides into newly synthesized DNA.


Asunto(s)
Aciclovir/farmacología , Antivirales/farmacología , Exodesoxirribonucleasas/antagonistas & inhibidores , Foscarnet/farmacología , Herpesvirus Humano 1/enzimología , Modelos Moleculares , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Proteínas Virales/antagonistas & inhibidores , Aciclovir/química , Aciclovir/metabolismo , Antivirales/química , Antivirales/metabolismo , Dominio Catalítico , ADN de Cadena Simple/química , ADN de Cadena Simple/metabolismo , ADN Polimerasa Dirigida por ADN/química , ADN Polimerasa Dirigida por ADN/genética , ADN Polimerasa Dirigida por ADN/metabolismo , Exodesoxirribonucleasas/química , Exodesoxirribonucleasas/genética , Exodesoxirribonucleasas/metabolismo , Foscarnet/química , Foscarnet/metabolismo , Herpesvirus Humano 1/efectos de los fármacos , Hidrólisis/efectos de los fármacos , Cinética , Estructura Molecular , Inhibidores de la Síntesis del Ácido Nucleico/química , Inhibidores de la Síntesis del Ácido Nucleico/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Ribonucleótidos/química , Ribonucleótidos/metabolismo , Especificidad por Sustrato , Proteínas Virales/química , Proteínas Virales/genética , Proteínas Virales/metabolismo
6.
Biochemistry ; 54(24): 3860-70, 2015 Jun 23.
Artículo en Inglés | MEDLINE | ID: mdl-26020841

RESUMEN

Acetyl-CoA carboxylase catalyzes the first and regulated step in fatty acid synthesis. In most Gram-negative and Gram-positive bacteria, the enzyme is composed of three proteins: biotin carboxylase, a biotin carboxyl carrier protein (BCCP), and carboxyltransferase. The reaction mechanism involves two half-reactions with biotin carboxylase catalyzing the ATP-dependent carboxylation of biotin-BCCP in the first reaction. In the second reaction, carboxyltransferase catalyzes the transfer of the carboxyl group from biotin-BCCP to acetyl-CoA to form malonyl-CoA. In this report, high-resolution crystal structures of biotin carboxylase from Haemophilus influenzae were determined with bicarbonate, the ATP analogue AMPPCP; the carboxyphosphate intermediate analogues, phosphonoacetamide and phosphonoformate; the products ADP and phosphate; and the carboxybiotin analogue N1'-methoxycarbonyl biotin methyl ester. The structures have a common theme in that bicarbonate, phosphate, and the methyl ester of the carboxyl group of N1'-methoxycarbonyl biotin methyl ester all bound in the same pocket in the active site of biotin carboxylase and as such utilize the same set of amino acids for binding. This finding suggests a catalytic mechanism for biotin carboxylase in which the binding pocket that binds tetrahedral phosphate also accommodates and stabilizes a tetrahedral dianionic transition state resulting from direct transfer of CO2 from the carboxyphosphate intermediate to biotin.


Asunto(s)
Adenosina Difosfato/química , Adenosina Trifosfato/química , Proteínas Bacterianas/química , Biotina/química , Ligasas de Carbono-Nitrógeno/química , Haemophilus influenzae/enzimología , Modelos Moleculares , Adenosina Difosfato/metabolismo , Adenosina Trifosfato/análogos & derivados , Adenosina Trifosfato/metabolismo , Proteínas Bacterianas/metabolismo , Bicarbonatos/química , Bicarbonatos/metabolismo , Biocatálisis , Biotina/análogos & derivados , Biotina/metabolismo , Ligasas de Carbono-Nitrógeno/metabolismo , Dominio Catalítico , Cristalografía por Rayos X , Bases de Datos de Proteínas , Foscarnet/química , Foscarnet/metabolismo , Conformación Molecular , Compuestos Organofosforados/química , Compuestos Organofosforados/metabolismo , Fosfatos/química , Fosfatos/metabolismo , Conformación Proteica , Subunidades de Proteína/química , Subunidades de Proteína/metabolismo
7.
Am J Kidney Dis ; 65(1): 152-5, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25301103

RESUMEN

We report a case of multiorgan failure resulting from treatment with the antiviral foscarnet in a kidney transplant recipient. Precipitation of foscarnet crystals was confirmed histologically from a biopsy of the transplant using optical and infrared microscopy. In addition to kidney damage resulting from foscarnet crystal precipitation in the tubular lumen and glomerular capillaries, the patient presented with pancreatitis, pancolitis, and myocarditis with shock. Interruption of the treatment led to rapid improvement in her general condition, but did not prevent permanent loss of the kidney transplant. When faced with unexplained multiorgan failure in a patient treated with foscarnet, one should assume this substance to be toxic. A kidney biopsy can confirm this diagnosis.


Asunto(s)
Infecciones por Citomegalovirus/tratamiento farmacológico , Foscarnet , Fallo Renal Crónico/cirugía , Glomérulos Renales/patología , Trasplante de Riñón , Insuficiencia Multiorgánica , Antivirales/administración & dosificación , Antivirales/efectos adversos , Antivirales/química , Biopsia , Precipitación Química , Cristalización , Infecciones por Citomegalovirus/diagnóstico , Femenino , Foscarnet/administración & dosificación , Foscarnet/efectos adversos , Foscarnet/química , Supervivencia de Injerto/efectos de los fármacos , Humanos , Trasplante de Riñón/efectos adversos , Trasplante de Riñón/métodos , Persona de Mediana Edad , Monitorización Inmunológica/métodos , Insuficiencia Multiorgánica/inducido químicamente , Insuficiencia Multiorgánica/diagnóstico , Insuficiencia Multiorgánica/fisiopatología , Insuficiencia Multiorgánica/terapia , Diálisis Renal/métodos , Resultado del Tratamiento , Privación de Tratamiento
8.
Antimicrob Agents Chemother ; 58(12): 7312-23, 2014 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-25267682

RESUMEN

The susceptibilities of gammaherpesviruses, including Epstein-Barr virus (EBV), Kaposi's sarcoma-associated herpesvirus (KSHV), and animal rhadinoviruses, to various nucleoside analogs was investigated in this work. Besides examining the antiviral activities and modes of action of antivirals currently marketed for the treatment of alpha- and/or betaherpesvirus infections (including acyclovir, ganciclovir, penciclovir, foscarnet, and brivudin), we also investigated the structure-activity relationship of various 5-substituted uridine and cytidine molecules. The antiviral efficacy of nucleoside derivatives bearing substitutions at the 5 position was decreased if the bromovinyl was replaced by chlorovinyl. 1-ß-D-Arabinofuranosyl-(E)-5-(2-bromovinyl)uracil (BVaraU), a nucleoside with an arabinose configuration of the sugar ring, exhibited no inhibitory effect against rhadinoviruses but was active against EBV. On the other hand, the fluoroarabinose cytidine analog 2'-fluoro-5-iodo-aracytosine (FIAC) showed high selectivity indices against gammaherpesviruses that were comparable to those of brivudin. Additionally, we selected brivudin- and acyclovir-resistant rhadinoviruses in vitro and characterized them by phenotypic and genotypic (i.e., sequencing of the viral thymidine kinase, protein kinase, and DNA polymerase) analysis. Here, we reveal key amino acids in these enzymes that play an important role in substrate recognition. Our data on drug susceptibility profiles of the different animal gammaherpesvirus mutants highlighted cross-resistance patterns and indicated that pyrimidine nucleoside derivatives are phosphorylated by the viral thymidine kinase and purine nucleosides are preferentially activated by the gammaherpesvirus protein kinase.


Asunto(s)
Antivirales/farmacología , Farmacorresistencia Viral/genética , Herpesvirus Humano 4/efectos de los fármacos , Herpesvirus Humano 8/efectos de los fármacos , Rhadinovirus/efectos de los fármacos , Proteínas Virales/química , Aciclovir/análogos & derivados , Aciclovir/química , Aciclovir/farmacología , Secuencia de Aminoácidos , Animales , Antivirales/química , Arabinofuranosil Uracilo/análogos & derivados , Arabinofuranosil Uracilo/química , Arabinofuranosil Uracilo/farmacología , Bromodesoxiuridina/análogos & derivados , Bromodesoxiuridina/química , Bromodesoxiuridina/farmacología , Citarabina/análogos & derivados , Citarabina/química , Citarabina/farmacología , ADN Polimerasa Dirigida por ADN/química , ADN Polimerasa Dirigida por ADN/genética , ADN Polimerasa Dirigida por ADN/metabolismo , Foscarnet/química , Foscarnet/farmacología , Ganciclovir/química , Ganciclovir/farmacología , Guanina , Herpesvirus Humano 4/enzimología , Herpesvirus Humano 4/genética , Herpesvirus Humano 8/enzimología , Herpesvirus Humano 8/genética , Humanos , Datos de Secuencia Molecular , Proteínas Quinasas/química , Proteínas Quinasas/genética , Proteínas Quinasas/metabolismo , Rhadinovirus/enzimología , Rhadinovirus/genética , Alineación de Secuencia , Relación Estructura-Actividad , Timidina Quinasa/química , Timidina Quinasa/genética , Timidina Quinasa/metabolismo , Proteínas Virales/genética , Proteínas Virales/metabolismo
9.
Colloids Surf B Biointerfaces ; 118: 117-25, 2014 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-24742953

RESUMEN

A new nanoparticulate system for foscarnet delivery was prepared and evaluated. Nanoparticles were obtained by ionotropic gelation of chitosan induced by foscarnet itself, acting as an ionotropic agent in a manner similar to tripolyphosphate anion. A Doehlert design allowed finding the suitable experimental conditions. Nanoparticles were between 200 and 300nm in diameter (around 450nm after redispersion). Nanoparticle size increased after 5h, but no size increase was observed after 48h when nanoparticles were crosslinked with glutaraldehyde. Zeta potential values of noncrosslinked and crosslinked nanoparticles were between 20 and 25mV, while drug loading of noncrosslinked nanoparticles was about 40% w/w (55% w/w for crosslinked nanoparticles). Nanoparticle yield was around 25% w/w. Crosslinked nanoparticles showed a controlled drug release. Foscarnet released from nanoparticles maintained the antiviral activity of the free drug when tested in vitro against lung fibroblasts (HELF) cells infected with HCMV strain AD-169. Moreover, nanoparticles showed no toxicity on non-infected HELF cells. These nanoparticles may represent a delivery system that could improve the therapeutic effect of foscarnet.


Asunto(s)
Antivirales/farmacología , Quitosano/síntesis química , Quitosano/farmacología , Foscarnet/síntesis química , Foscarnet/farmacología , Nanopartículas/química , Antivirales/química , Quitosano/química , Citomegalovirus/efectos de los fármacos , Estabilidad de Medicamentos , Endocitosis/efectos de los fármacos , Fibroblastos/efectos de los fármacos , Fibroblastos/virología , Fluorescencia , Foscarnet/química , Glutaral/química , Proteínas Fluorescentes Verdes/metabolismo , Humanos , Pulmón/embriología
10.
Tohoku J Exp Med ; 231(2): 145-58, 2013 10.
Artículo en Inglés | MEDLINE | ID: mdl-24140868

RESUMEN

Bisphosphonates (BPs) are pyrophosphate analogs. They are widely used against enhanced bone-resorption in various diseases. Nitrogen-containing BPs (N-BPs) exhibit strong anti-bone-resorptive effects but have inflammatory and necrotic side effects. The non-nitrogen-containing BPs (non-N-BPs) etidronate and clodronate lack such side effects, but their anti-bone-resorptive effects are weak. In mice, etidronate and clodronate reduce the inflammatory/necrotic effects of N-BPs, even those of zoledronate, the N-BP with the strongest anti-bone-resorptive effect yet reported and the highest risk of inflammation/necrosis. Here, to explore the mechanisms underlying this protection, we used a mouse model in which a single reagent or a mixture of two reagents was injected subcutaneously into ear-pinnas. These reagents included zoledronate, four non-N-BPs, pyrophosphate, and inhibitors of various organic-anion-transporters. Pyrophosphate and two of the four non-N-BPs (not etidronate or clodronate) had inflammatory/necrotic effects. These effects were reduced by etidronate and clodronate, but not by phosphonoformate, an inhibitor of two of the three known phosphate-transporter families. Phosphonoformate reduced the inflammatory/necrotic effects of zoledronate, but not those of pyrophosphate or of non-N-BPs. Conversely, pyrophosphate, at non-inflammatory/necrotic concentrations, reduced the inflammatory/necrotic effects of non-N-BPs, but not those of zoledronate. The efficacies of the protective effects against the inflammatory/necrotic effects of zoledronate were clodronate > etidronate > phosphonoformate. These findings suggest that (i) the N-BP zoledronate may enter soft-tissue cells via phosphonoformate-inhibitable phosphate-transporters, (ii) other phosphate-transporters may carry pyrophosphate and inflammatory/necrotic non-N-BPs into such cells, and (iii) etidronate and clodronate inhibit all these transporters, and they ameliorate the side effects of zoledronate by inhibiting phosphonoformate-inhibitable phosphate-transporters.


Asunto(s)
Resorción Ósea/prevención & control , Difosfonatos/efectos adversos , Imidazoles/efectos adversos , Necrosis/inducido químicamente , Osteítis/inducido químicamente , Proteínas de Transporte de Fosfato/antagonistas & inhibidores , Animales , Ácido Clodrónico/química , Ácido Clodrónico/farmacología , Difosfonatos/química , Ácido Etidrónico/química , Ácido Etidrónico/farmacología , Femenino , Foscarnet/química , Foscarnet/metabolismo , Imidazoles/química , Ratones , Ratones Endogámicos BALB C , Estructura Molecular , Necrosis/tratamiento farmacológico , Osteítis/tratamiento farmacológico , Ácido Zoledrónico
11.
J Biol Chem ; 288(24): 17336-46, 2013 Jun 14.
Artículo en Inglés | MEDLINE | ID: mdl-23598281

RESUMEN

Nucleotide-competing reverse transcriptase inhibitors were shown to bind reversibly to the nucleotide-binding site of the reverse transcriptase (RT) enzyme of human immunodeficiency virus type 1 (HIV-1). Here, we show that the presence of ATP can enhance the inhibitory effects of the prototype compound INDOPY-1. We employed a combination of cell-free and cell-based assays to shed light on the underlying molecular mechanism. Binding studies and site-specific footprinting experiments demonstrate the existence of a stable quaternary complex with HIV-1 RT, its nucleic acid substrate, INDOPY-1, and ATP. The complex is frozen in the post-translocational state that usually accommodates the incoming nucleotide substrate. Structure-activity relationship studies show that both the base and the phosphate moieties of ATP are elements that play important roles in enhancing the inhibitory effects of INDOPY-1. In vitro susceptibility measurements with mutant viruses containing amino acid substitutions K70G, V75T, L228R, and K219R in the putative ATP binding pocket revealed unexpectedly a hypersusceptible phenotype with respect to INDOPY-1. The same mutational cluster was previously shown to reduce susceptibility to the pyrophosphate analog phosphonoformic acid. However, in the absence of INDOPY-1, ATP can bind and act as a pyrophosphate donor under conditions that favor formation of the pre-translocated RT complex. We therefore conclude that the mutant enzyme facilitates simultaneous binding of INDOPY-1 and ATP to the post-translocated complex. Based on these data, we propose a model in which the bound ATP traps the inhibitor, which, in turn, compromises its dissociation.


Asunto(s)
Adenosina Trifosfato/química , Fármacos Anti-VIH/química , Transcriptasa Inversa del VIH/química , VIH-1/enzimología , Indoles/química , Nitrilos/química , Piridonas/química , ADN Viral/biosíntesis , ADN Viral/química , Estabilidad de Enzimas , Foscarnet/química , Células HEK293 , Transcriptasa Inversa del VIH/antagonistas & inhibidores , Humanos , Unión Proteica , Relación Estructura-Actividad
13.
J Biol Chem ; 286(28): 25246-55, 2011 Jul 15.
Artículo en Inglés | MEDLINE | ID: mdl-21566148

RESUMEN

Phosphonoformic acid (PFA, foscarnet) belongs to a class of antiviral drugs that inhibit the human cytomegalovirus DNA polymerase (UL54) by mimicking the pyrophosphate leaving group of the nucleotide transfer reaction. Difficulties expressing UL54 have hampered investigation of the precise structural requirements rendering inhibition by this drug. However, a previously engineered chimeric DNA polymerase, constructed by mutating the homologous polymerase from bacteriophage RB69 (gp43) to express several variable elements from UL54, can bypass this obstacle because of its favorable expression and acquired sensitivity to PFA (Tchesnokov, E. P., Obikhod, A., Schinazi, R. F., and Götte, M. (2008) J. Biol. Chem. 283, 34218-34228). Here, we compare two crystal structures that depict the chimeric DNA polymerase with and without PFA bound. PFA is visualized for the first time in the active site of a DNA polymerase, where interactions are resolved between the PP(i) mimic and two basic residues absolutely conserved in the fingers domain of family B polymerases. PFA also chelates metal ion B, the cation that contacts the triphosphate tail of the incoming nucleotide. These DNA complexes utilize a primer-template pair enzymatically chain-terminated by incorporation of acyclo-GMP, the phosphorylated form of the anti-herpes drug acyclovir. We postulate that the V478W mutation present in the chimera is critical in that it pushes the fingers domain to more readily adopt the closed conformation whether or not the drug is bound. The closed state of the fingers domain traps the variant polymerase in the untranslocated state and increases affinity for PFA. This finding provides a model for the mechanism of UL54 stalling by PFA.


Asunto(s)
Citomegalovirus/enzimología , ADN Polimerasa Dirigida por ADN/química , Foscarnet/química , Modelos Moleculares , Proteínas Virales/química , Aciclovir/análogos & derivados , Aciclovir/química , Sustitución de Aminoácidos , Cristalografía por Rayos X , Citomegalovirus/genética , ADN Polimerasa Dirigida por ADN/genética , Humanos , Mutación Puntual , Estructura Terciaria de Proteína , Proteínas Virales/genética
14.
Biochemistry ; 50(17): 3481-94, 2011 May 03.
Artículo en Inglés | MEDLINE | ID: mdl-21366328

RESUMEN

Phosphonates constitute a class of natural products that mimic the properties of the more common organophosphate ester metabolite yet are not readily degraded owing to the direct linkage of the phosphorus atom to the carbon atom. Phosphonate hydrolases have evolved to allow bacteria to utilize environmental phosphonates as a source of carbon and phosphorus. The work reported in this paper examines one such enzyme, phosphonoacetate hydrolase. By using a bioinformatic approach, we circumscribed the biological range of phosphonoacetate hydrolase to a select group of bacterial species from different classes of Proteobacteria. In addition, using gene context, we identified a novel 2-aminoethylphosphonate degradation pathway in which phosphonoacetate hydrolase is a participant. The X-ray structure of phosphonoformate-bound phosphonoacetate hydrolase was determined to reveal that this enzyme is most closely related to nucleotide pyrophosphatase/diesterase, a promiscuous two-zinc ion metalloenzyme of the alkaline phosphatase enzyme superfamily. The X-ray structure and metal ion specificity tests showed that phosphonoacetate hydrolase is also a two-zinc ion metalloenzyme. By using site-directed mutagenesis and (32)P-labeling strategies, the catalytic nucleophile was shown to be Thr64. A structure-guided, site-directed mutation-based inquiry of the catalytic contributions of active site residues identified Lys126 and Lys128 as the most likely candidates for stabilization of the aci-carboxylate dianion leaving group. A catalytic mechanism is proposed which combines Lys12/Lys128 leaving group stabilization with zinc ion activation of the Thr64 nucleophile and the substrate phosphoryl group.


Asunto(s)
Fosfatasa Alcalina/química , Proteínas Bacterianas/química , Proteobacteria , Fosfatasa Alcalina/genética , Proteínas Bacterianas/genética , Catálisis , Dominio Catalítico , Cationes Bivalentes , Cristalografía por Rayos X , Foscarnet/química , Concentración de Iones de Hidrógeno , Metales Pesados , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Estructura Cuaternaria de Proteína , Estructura Terciaria de Proteína , Especificidad por Sustrato
15.
Bioorg Med Chem ; 17(1): 303-10, 2009 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-19010684

RESUMEN

To prepare a new antiviral duplex drug linking Zidovudine (AZT) and Foscarnet (PFA) via a lipophilic octadecylglycerol residue we condensed 1-O-4-monomethoxytrityl-3-O-octadecyl-sn-glycerol-2-hydrogenphosphonate obtained from 3-O-octadecyl-sn-glycerol with AZT by the phosphonate method. The purified condensation product was de-tritylated resulting in 3'-azido-3'-deoxythymidylyl-(5'-->2-O)-3-O-octadecyl-sn-glycerol, followed by treatment with (ethoxycarbonyl)phosphoric dichloride. The resulting 3'-azido-3'-deoxy-thymidylyl-(5'-->2)-3-O-octadecyl-sn-glycerol-1-O-(ethoxycarbonyl)phosphonate was purified by preparative RP-18 column chromatography. The antiviral duplex drug 3'-azido-3'-deoxythymidylyl-(5'-->2-O)-3-O-octadecyl-sn-glycerol-1-O-phosphonoformate trisodium salt (AZT-lipid-PFA) was obtained after alkaline cleavage of the phosphonoformate ethylester residue. The overall yield of the five step synthesis performed at gram scale was about 30%. According to a supposed pathway AZT-lipid-PFA could be cleaved to yield a mixture of different antiviral compounds such as AZT, AZT-5'-monophosphate, octadecylglycerol-AZT, PFA and octadecylglycerol-PFA, possibly producing additive and/or synergistic antiviral effects. In vitro studies showed that the duplex drug exhibits antiviral activities against HIV and especially against drug-resistant strains and clinical isolates of HSV and HCMV. The E(50) values of AZT-lipid-PFA against HIV ranged between 170 and 200 nM. The half-maximal inhibitory doses (IC(50)) against highly acyclovir (ACV)-resistant HSV isolates determined by a plaque reduction assay ranged between 1.87 and 4.59 microM. Using ganciclovir (GCV)-sensitive, GCV resistant and drug cross-resistant HCMV strains the IC(50)-values of AZT-lipid-PFA were between 2.78 and 1.18 microM. With regard to PFA, the IC(50)-value of AZT-lipid-PFA determined on a multi-drug-resistant HCMV strain was about 90-fold lower than that of PFA, demonstrating the superior antiviral effect of the duplex-drug.


Asunto(s)
Antivirales/síntesis química , Foscarnet/análogos & derivados , Zidovudina/análogos & derivados , Reactivos de Enlaces Cruzados , Citomegalovirus/efectos de los fármacos , Interacciones Farmacológicas , Foscarnet/química , Foscarnet/farmacología , Éteres de Glicerilo , VIH/efectos de los fármacos , Humanos , Concentración 50 Inhibidora , Simplexvirus/efectos de los fármacos , Zidovudina/química , Zidovudina/farmacología
16.
Bioorg Med Chem Lett ; 17(8): 2210-5, 2007 Apr 15.
Artículo en Inglés | MEDLINE | ID: mdl-17314045

RESUMEN

Foscarnet (phosphonoformate trisodium salt), an antiviral used for the treatment of HIV and herpes virus infections, also acts as an activator or inhibitor of the metalloenzyme carbonic anhydrase (CA, EC 4.2.1.1). Interaction of the drug with 11 CA isozymes has been investigated kinetically, and the X-ray structure of its adduct with isoform I (hCA I-foscarnet complex) has been resolved. The first CA inhibitor possessing a phosphonate zinc-binding group is thus evidenced, together with the factors governing recognition of such small molecules by a metalloenzyme active site. Foscarnet is also a clear-cut example of modulator of an enzyme activity which can act either as an activator or inhibitor of a CA isozyme.


Asunto(s)
Anhidrasa Carbónica I/química , Inhibidores de Anhidrasa Carbónica/química , Foscarnet/química , Organofosfonatos/química , Zinc/química , Sitios de Unión , Anhidrasa Carbónica I/efectos de los fármacos , Humanos , Relación Estructura-Actividad
17.
AAPS PharmSciTech ; 8(4): E118, 2007 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-18181539

RESUMEN

The objective of this study was to evaluate the effect of 2 independent formulation variables on the drug release from a novel doughnut-shaped minitablet (DSMT) in order to optimize formulations for intraocular drug delivery. Formulations were based on a 3(2) full-factorial design. The 2 independent variables were the concentration of Resomer (% wt/wt) and the type of Resomer grade (RG502, RG503, and RG504), respectively. The evaluated response was the drug release rate constant computed from a referenced marketed product and in vitro drug release data obtained at pH 7.4 in simulated vitreous humor. DSMT devices were prepared containing either of 2 model drugs, ganciclovir or foscarnet, using a Manesty F3 tableting press fitted with a novel central-rod, punch, and die setup. Dissolution data revealed biphasic drug release behavior with 55% to 60% drug released over 120 days. The inherent viscosity of the various Resomer grades and the concentration were significant to achieve optimum release rate constants. Using the resultant statistical relationships with the release rate constant as a response, the optimum formulation predicted for devices formulated with foscarnet was 70% wt/wt of Resomer RG504, while 92% wt/wt of Resomer RG503 was ideal for devices formulated with ganciclovir. The results of this study revealed that the full-factorial design was a suitable tool to predict an optimized formulation for prolonged intraocular drug delivery.


Asunto(s)
Antivirales/química , Humor Acuoso/química , Portadores de Fármacos , Poliglactina 910/química , Administración Tópica , Antivirales/administración & dosificación , Antivirales/metabolismo , Humor Acuoso/metabolismo , Química Farmacéutica , Composición de Medicamentos , Implantes de Medicamentos , Foscarnet/química , Ganciclovir/química , Concentración de Iones de Hidrógeno , Cinética , Modelos Químicos , Modelos Estadísticos , Proyectos de Investigación , Solubilidad , Comprimidos , Tecnología Farmacéutica/métodos , Viscosidad
18.
J Am Chem Soc ; 128(15): 5251-61, 2006 Apr 19.
Artículo en Inglés | MEDLINE | ID: mdl-16608361

RESUMEN

Phosphonoformate oligodeoxyribonucleotides were prepared via a solid phase synthesis strategy. The first step in the preparation of appropriate synthons was condensation of bis(N,N-diisopropylamino)phosphine and diphenylmethylsilylethyl chloroformate in the presence of sodium metal to yield formic acid, [bis(N,N-diisopropylamino)phosphino]-beta-(diphenylmethylsilylethyl) ester. The product of this reaction was then condensed with appropriately protected 2'-deoxynucleosides using 4,5-dicyanoimidazole to yield the 3'-O-phosphinoamidite reactive monomers. The exocyclic amines of cytosine, adenine, and guanine were protected with 9-fluorenylmethyloxycarbonyl, and oligodeoxyribonucleotides were synthesized on controlled pore glass using the hydroquinone-O,O'-diacetic acid linker. Synthons were sequentially added to this support using tetrazole as an activator, oxidized to phosphonoformate, and the transient 5'-protecting group was removed with acid. Following total synthesis of an oligomer, protecting groups were removed with TEMED.HF and products purified by HPLC. These analogues were resistant to nucleases, formed duplexes with complementary RNA (A-form), and, as chimeric oligomers containing phosphate at selected sites, stimulated RNase H1 activity.


Asunto(s)
Foscarnet/análogos & derivados , Oligodesoxirribonucleótidos/síntesis química , Fenómenos Biofísicos , Biofisica , Foscarnet/síntesis química , Foscarnet/química , Resonancia Magnética Nuclear Biomolecular , Oligodesoxirribonucleótidos/química
19.
Int J Pharm ; 310(1-2): 15-24, 2006 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-16460894

RESUMEN

A novel doughnut-shaped minitablet (DSMT) was developed and evaluated as a biodegradable intraocular drug delivery system for rate-modulated delivery of antiviral bioactives. The DSMT device was manufactured using a special set of punches fitted with a central-rod in a Manesty tableting press. The DSMT device released the antiretrovirals foscarnet and ganciclovir at a first-order rate. The erosion kinetics was assessed by gravimetric analysis and scanning electron microscopy. The device gradually eroded when immersed in simulated vitreous humor (SVH) (pH 7.4, 37 degrees C) and released bioactives in a sustained manner. The novel geometric design and veracity of the DSMT device was retained even after 24 weeks of erosion. When considering the duration of the bioactive released from the DSMT device, it was found that by the careful selection of the type and concentration of polymer employed in formulating the DSMT device, it was possible to produce a device that could release drug for any period up to 12 months.


Asunto(s)
Antirretrovirales , Humor Acuoso , Portadores de Fármacos , Antirretrovirales/química , Antirretrovirales/metabolismo , Humor Acuoso/química , Humor Acuoso/metabolismo , Portadores de Fármacos/química , Portadores de Fármacos/metabolismo , Implantes de Medicamentos , Ojo/química , Ojo/metabolismo , Foscarnet/química , Foscarnet/metabolismo , Ganciclovir/química , Ganciclovir/metabolismo , Dureza , Humanos , Técnicas In Vitro , Ácido Láctico/química , Ácido Poliglicólico/química , Copolímero de Ácido Poliláctico-Ácido Poliglicólico , Polímeros/química , Solubilidad , Comprimidos/química , Viscosidad
20.
J Biol Chem ; 281(8): 5120-7, 2006 Feb 24.
Artículo en Inglés | MEDLINE | ID: mdl-16377640

RESUMEN

During embryogenesis, the expression of mammalian stanniocalcin (STC1) in the appendicular skeleton suggests its involvement in the regulation of longitudinal bone growth. Such a role is further supported by the presence of dwarfism in mice overexpressing STC1. Yet, the STC 1 inhibitory effect on growth may be related to both postnatal metabolic abnormalities and prenatal defective bone formation. In our study, we used an organ culture system to evaluate the effects of STC on growth plate chondrogenesis, which is the primary determinant of longitudinal bone growth. Fetal rat metatarsal bones were cultured in the presence of recombinant human STC (rhSTC). After 3 days, rhSTC suppressed metatarsal growth, growth plate chondrocyte proliferation and hypertrophy/differentiation, and extracellular matrix synthesis. In addition, rhSTC increased the number of apoptotic chondrocytes in the growth plate. In cultured chondrocytes, rhSTC increased phosphate uptake, reduced chondrocyte proliferation and matrix synthesis, and induced apoptosis. All these effects were reversed by culturing chondrocytes with rhSTC and phosphonoformic acid, an inhibitor of phosphate transport. The rhSTC-mediated inhibition of metatarsal growth and growth plate chondrocyte proliferation and hypertrophy/differentiation was abolished by culturing metatarsals with rhSTC and phosphonoformic acid. Taken together, our findings indicate that STC1 inhibits longitudinal bone growth directly at the growth plate. Such growth inhibition, likely mediated by an increased chondrocyte phosphate uptake, results from suppressed chondrocyte proliferation, hypertrophy/differentiation, and matrix synthesis and by increased apoptosis. Last, the expression of both STC1 and its binding site in the growth plate would support an autocrine/paracrine role for this growth factor in the regulation of growth plate chondrogenesis.


Asunto(s)
Condrocitos/metabolismo , Regulación del Desarrollo de la Expresión Génica , Glicoproteínas/fisiología , Animales , Apoptosis , Sitios de Unión , Western Blotting , Desarrollo Óseo , Huesos/metabolismo , Bromodesoxiuridina/farmacología , Diferenciación Celular , Proliferación Celular , Citometría de Flujo , Foscarnet/química , Glicoproteínas/metabolismo , Humanos , Inmunohistoquímica , Hibridación in Situ , Huesos Metatarsianos/embriología , Comunicación Paracrina , Proteoglicanos/química , Ratas , Ratas Sprague-Dawley , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Factores de Tiempo
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