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1.
Appl Environ Microbiol ; 90(7): e0028124, 2024 Jul 24.
Artículo en Inglés | MEDLINE | ID: mdl-38975762

RESUMEN

Mesophilic enzymes, which are active at moderate temperatures, may dominate enzymatic reactions even in the presence of thermophilic crude enzymes. This study was conducted to investigate this hypothesis with mesophilic inositol dehydrogenases (IolG and IolX) produced in Geobacillus kaustophilus HTA426. To ensure the efficient production of mesophilic enzymes, we first screened for promoters induced at moderate temperatures using transcriptome analysis and identified four genes highly expressed at 30°C in the thermophile. We further characterized these promoters using fluorescent reporter assays to determine that the mti3 promoter could direct efficient gene expression at 40°C. We cloned the promoter into an Escherichia coli-Geobacillus shuttle plasmid and confirmed that the resulting vector functioned in G. kaustophilus and other thermophiles. We then used this vector for the cooperative expression of the iolG and iolX genes from Bacillus subtilis 168. G. kaustophilus cells carrying the expression vector were incubated at 60°C for cellular propagation and then at 40°C for the production of IolG and IolX. When the cells were permeabilized, IolG and IolX acted as catalysts to convert exogenous myo-inositol into scyllo-inositol at 30°C. In a scaled-up reaction, 10 g of myo-inositol was converted to 1.8 g of scyllo-inositol, which was further purified to yield 970 mg of pure powder. Notably, myo-inositol was degraded by intrinsic enzymes of G. kaustophilus at 60°C but not at 30°C, supporting our initial hypothesis. We indicate that this approach is useful for preparing enzyme cocktails without the need for purification. IMPORTANCE: Enzyme cocktails are commonly employed for cell-free chemical synthesis; however, their preparation involves cumbersome processes. This study affirms that mesophilic enzymes in thermophilic crude extracts can function as specific catalysts at moderate temperatures, akin to enzyme cocktails. The catalyst was prepared by permeabilizing cells without the need for concentration, extraction, or purification processes; hence, its preparation was considerably simpler compared with conventional methods for enzyme cocktails. This approach was employed to produce pure scyllo-inositol from an economical substrate. Notably, this marks the first large-scale preparation of pure scyllo-inositol, holding potential pharmaceutical significance as scyllo-inositol serves as a promising agent for certain diseases but is currently expensive. Moreover, this approach holds promise for application in pathway engineering within living cells. The envisioned pathway is designed without chromosomal modification and is simply regulated by switching culture temperatures. Consequently, this study introduces a novel platform for both whole-cell and cell-free synthetic systems.


Asunto(s)
Proteínas Bacterianas , Geobacillus , Inositol , Inositol/metabolismo , Geobacillus/genética , Geobacillus/enzimología , Geobacillus/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Bacillus subtilis/genética , Bacillus subtilis/enzimología , Bacillus subtilis/metabolismo , Deshidrogenasas del Alcohol de Azúcar/genética , Deshidrogenasas del Alcohol de Azúcar/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Regiones Promotoras Genéticas
2.
Extremophiles ; 28(2): 27, 2024 Jun 11.
Artículo en Inglés | MEDLINE | ID: mdl-38861190

RESUMEN

In this study, EPS production conditions of Geobacillus thermodenitrificans HBB 111, a thermophilic microorganism, were optimized and the amount of produced EPS (EPS 111) was found to be 44.0 mg/L. EPS 111 was purified using ion exchange chromatography and gel filtration chromatography, and a single type of exopolysaccharide was obtained. The structure of the purified EPS 111 was evaluated by TLC, FTIR, NMR, and GC-MS, and it was observed that it contained hexose (glucose, fructose, galactose and mannose) and pentose sugars. From the SEM photographs, it was understood that EPS 111 had an amorphous, rough, and layered structure. It was found that purified EPS 111 had low cytotoxicity (2.3%) and exhibited high antioxidant activity and remarkable antidiabetic, prebiotic and fibrinolytic activities. It is very valuable that the purified EPS 111 in this study offers multiple biological activities compared to the thermophilic EPSs reported in the literature and has a high potential for use in biotechnological and biomedical fields.


Asunto(s)
Geobacillus , Polisacáridos Bacterianos , Geobacillus/metabolismo , Polisacáridos Bacterianos/farmacología , Polisacáridos Bacterianos/química , Polisacáridos Bacterianos/aislamiento & purificación , Antioxidantes/química , Antioxidantes/farmacología
3.
J Environ Manage ; 354: 120416, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38408391

RESUMEN

Hydrogen sulfide (H2S) is a toxic gas massively released during chicken manure composting. Diminishing its release requires efficient and low cost methods. In recent years, heterotrophic bacteria capable of rapid H2S oxidation have been discovered but their applications in environmental improvement are rarely reported. Herein, we investigated H2S oxidation activity of a heterotrophic thermophilic bacterium Geobacillus thermodenitrificans DSM465, which contains a H2S oxidation pathway composed by sulfide:quinone oxidoreductase (SQR) and persulfide dioxygenase (PDO). This strain rapidly oxidized H2S to sulfane sulfur and thiosulfate. The oxidation rate reached 5.73 µmol min-1·g-1 of cell dry weight. We used G. thermodenitrificans DSM465 to restrict H2S release during chicken manure composting. The H2S emission during composting process reduced by 27.5% and sulfate content in the final compost increased by 34.4%. In addition, this strain prolonged the high temperature phase by 7 days. Thus, using G. thermodenitrificans DSM465 to control H2S release was an efficient and economic method. This study provided a new strategy for making waste composting environmental friendly and shed light on perspective applications of heterotrophic H2S oxidation bacteria in environmental improvements.


Asunto(s)
Compostaje , Geobacillus , Sulfuro de Hidrógeno , Animales , Pollos , Estiércol , Proteínas Bacterianas/metabolismo , Sulfuros/metabolismo , Geobacillus/metabolismo , Oxidación-Reducción
4.
Int J Biol Macromol ; 263(Pt 2): 130438, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-38408579

RESUMEN

Genome sequence of Geobacillus thermopakistaniensis contains an open reading frame annotated as a type II L-asparaginase (ASNaseGt). Critical structural analysis disclosed that ASNaseGt might be a type I L-asparaginase. In order to determine whether it is a type I or type II L-asparaginase, we have performed the structural-functional characterization of the recombinant protein as well as analyzed the localization of ASNaseGt in G. thermopakistaniensis. ASNaseGt exhibited optimal activity at 52 °C and pH 9.5. There was a > 3-fold increase in activity in the presence of ß-mercaptoethanol. Apparent Vmax and Km values were 2735 U/mg and 0.35 mM, respectively. ASNaseGt displayed high thermostability with >80 % residual activity even after 6 h of incubation at 55 °C. Recombinant ASNaseGt existed in oligomeric form. Addition of ß-mercaptoethanol lowered the degree of oligomerization and displayed that tetrameric form was the most active, with a specific activity of 4300 U/mg. Under physiological conditions, ASNaseGt displayed >50 % of the optimal activity. Localization studies in G. thermopakistaniensis revealed that ASNaseGt is a cytosolic protein. Structural and functional characterization, and localization in G. thermopakistaniensis displayed that ASNaseGt is not a type II but a type I L-asparaginase.


Asunto(s)
Asparaginasa , Geobacillus , Asparaginasa/química , Geobacillus/genética , Geobacillus/metabolismo , Mercaptoetanol , Proteínas Recombinantes/genética , Estabilidad de Enzimas
5.
Extremophiles ; 28(1): 6, 2023 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-38036917

RESUMEN

This study investigated the metabolism of Geobacillus sp. LC300, a promising biorefinery host organism with high substrate utilization rates. A new defined medium was designed and tested that allows for exponential growth to elevated cell densities suitable for quantitative physiological studies. Screening of the metabolic requirements of G. sp. LC300 revealed prototrophy for all essential amino acids and most vitamins and only showed auxotrophy for vitamin B12 and biotin. The effect of temperature and pH on growth rate was investigated, adjusting the optimal growth temperature to several degrees lower than previously reported. Lastly, studies on carbon source utilization revealed a capability for fast growth on several common carbon sources, including monosaccharides, oligosaccharides, and polysaccharides, and the highest ever reported growth rate in defined medium on glucose (2.20 h-1) or glycerol (1.95 h-1). These findings provide a foundation for further exploration of G. sp. LC300's physiology and metabolic regulation, and its potential use in bioproduction processes.


Asunto(s)
Geobacillus , Geobacillus/metabolismo , Carbono/metabolismo , Temperatura , Glucosa/metabolismo
6.
Extremophiles ; 27(2): 18, 2023 Jul 10.
Artículo en Inglés | MEDLINE | ID: mdl-37428266

RESUMEN

Geobacillus sp. ID17 is a gram-positive thermophilic bacterium isolated from Deception Island, Antarctica, which has shown to exhibit remarkable laccase activity in crude extract at high temperatures. A bioinformatic search using local databases led to the identification of three putative multicopper oxidase sequences in the genome of this microorganism. Sequence analysis revealed that one of those sequences contains the four-essential copper-binding sites present in other well characterized laccases. The gene encoding this sequence was cloned and overexpressed in Escherichia coli, partially purified and preliminary biochemically characterized. The resulting recombinant enzyme was recovered in active and soluble form, exhibiting optimum copper-dependent laccase activity at 55 °C, pH 6.5 with syringaldazine substrate, retaining over 60% of its activity after 1 h at 55 and 60 °C. In addition, this thermophilic enzyme is not affected by common inhibitors SDS, NaCl and L-cysteine. Furthermore, biodecolorization assays revealed that this laccase is capable of degrading 60% of malachite green, 54% of Congo red, and 52% of Remazol Brilliant Blue R, after 6 h at 55 °C with aid of ABTS as redox mediator. The observed properties of this enzyme and the relatively straightforward overexpression and partial purification of it could be of great interest for future biotechnology applications.


Asunto(s)
Geobacillus , Lacasa , Lacasa/química , Regiones Antárticas , Cobre/metabolismo , Geobacillus/genética , Geobacillus/metabolismo , Rojo Congo/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Concentración de Iones de Hidrógeno , Temperatura
7.
CRISPR J ; 6(3): 278-288, 2023 06.
Artículo en Inglés | MEDLINE | ID: mdl-37134217

RESUMEN

Most genetic engineering applications reported thus far rely on the type II-A CRISPR-Cas9 nuclease from Streptococcus pyogenes (SpyCas9), limiting the genome-targeting scope. In this study, we demonstrate that a small, naturally accurate, and thermostable type II-C Cas9 ortholog from Geobacillus thermodenitrificans (ThermoCas9) with alternative target site preference is active in human cells, and it can be used as an efficient genome editing tool, especially for gene disruption. In addition, we develop a ThermoCas9-mediated base editor, called ThermoBE4, for programmable nicking and subsequent C-to-T conversions in human genomes. ThermoBE4 exhibits a three times larger window of activity compared with the corresponding SpyCas9 base editor (BE4), which may be an advantage for gene mutagenesis applications. Hence, ThermoCas9 provides an alternative platform that expands the targeting scope of both genome and base editing in human cells.


Asunto(s)
Proteína 9 Asociada a CRISPR , Edición Génica , Geobacillus , Edición Génica/métodos , Humanos , Genoma , Sistemas CRISPR-Cas , Proteína 9 Asociada a CRISPR/metabolismo , Geobacillus/metabolismo , Ingeniería Genética/métodos , Escherichia coli , Células HEK293
8.
Folia Microbiol (Praha) ; 67(3): 389-404, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35229277

RESUMEN

The genus Geobacillus is one of the most important genera which mainly comprises gram-positive thermophilic bacterial strains including obligate aerobes, denitrifiers and facultative anaerobes having capability of endospore formation as well. The genus Geobacillus is widely distributed in nature and mostly abundant in extreme locations such as cool soils, hot springs, hydrothermal vents, marine trenches, hay composts and dairy plants. Due to plasticity towards environmental adaptation, the Geobacillus sp. shows remarkable genome diversification and acquired many beneficial properties, which facilitates their exploitation for many biotechnological applications. Many thermophiles are of biotechnological importance and having considerable interest in commercial applications for the production of industrially important products. Recently, due to catabolic versatility especially in the degradation of hemicellulose and starch containing agricultural waste and rapid growth rates, these microorganisms show potential for the production of biofuels, thermostable enzymes and bioremediation. This review mainly summarizes the status of Geobacillus sp. including its notable properties, biotechnological studies and its potential application in the production of industrially important products.


Asunto(s)
Geobacillus , Biodegradación Ambiental , Biocombustibles , Biotecnología , Geobacillus/genética , Geobacillus/metabolismo
9.
Biotechnol Lett ; 44(1): 101-112, 2022 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-35001212

RESUMEN

ß-hydroxybutyric acid is the most sensitive indicator in ketoacidosis detection, and accounts for nearly 78% of the ketone bodies. Diaphorase is commonly used to detect the ß-hydroxybutyric acid in clinical diagnosis. However, the extraction of diaphorase from animal myocardium is complex and low-yield, which is not convenient for large-scale production. In this study, a diaphorase from Geobacillus sp. Y4.1MC1 was efficiently heterologous expressed and purified in E. coli with a yield of 110 mg/L culture. The optimal temperature and pH of this recombinant diaphorase (rDIA) were 55 °C and 6.5, respectively. It was proved that rDIA was a dual acid- and thermo-stable enzyme, and which showed much more accurate detection of ß-hydroxybutyric acid than the commercial enzyme. Additionally, we also investigated the molecular interaction of rDIA with the substrate, and the conformation transition in different pH values by using homology modeling and molecular dynamics simulation. The results showed that 141-161 domain of rDIA played important role in the structure changes and conformations transmission at different pH values. Moreover, it was predicted that F105W, F105R, and M186R mutants were able to improve the binding affinity of rDIA, and A2Y, P35F, Q36D, N210L, F211Y mutants were benefit for the stability of rDIA.


Asunto(s)
Geobacillus , Clonación Molecular , Estabilidad de Enzimas , Escherichia coli/genética , Escherichia coli/metabolismo , Geobacillus/genética , Geobacillus/metabolismo , Concentración de Iones de Hidrógeno , Proteínas Recombinantes/metabolismo , Temperatura
10.
Biomolecules ; 11(5)2021 05 18.
Artículo en Inglés | MEDLINE | ID: mdl-34069858

RESUMEN

The available magnetic field strength for high resolution NMR in persistent superconducting magnets has recently improved from 23.5 to 28 Tesla, increasing the proton resonance frequency from 1 to 1.2 GHz. For magic-angle spinning (MAS) NMR, this is expected to improve resolution, provided the sample preparation results in homogeneous broadening. We compare two-dimensional (2D) proton detected MAS NMR spectra of four membrane proteins at 950 and 1200 MHz. We find a consistent improvement in resolution that scales superlinearly with the increase in magnetic field for three of the four examples. In 3D and 4D spectra, which are now routinely acquired, this improvement indicates the ability to resolve at least 2 and 2.5 times as many signals, respectively.


Asunto(s)
Geobacillus/metabolismo , Virus de la Influenza A/metabolismo , Proteínas de la Membrana/química , Neisseria gonorrhoeae/metabolismo , Espectroscopía de Protones por Resonancia Magnética/instrumentación , Proteínas de la Membrana Bacteriana Externa/química , Humanos , Campos Magnéticos , Modelos Moleculares , Proteínas Quinasas/química , Estructura Secundaria de Proteína , Proteínas de la Matriz Viral/química , Canales Aniónicos Dependientes del Voltaje/química
11.
J Mol Graph Model ; 105: 107897, 2021 06.
Artículo en Inglés | MEDLINE | ID: mdl-33770705

RESUMEN

Critical to the applications of proteins in non-aqueous enzymatic processes is their structural dynamics in relation to solvent polarity. A pool of mutants derived from Geobacillus zalihae T1 lipase was screened in organic solvents (methanol, ethanol, propanol, butanol and pentanol) resulting in the selection of six mutants at initial screening (A83D/K251E, R21C, G35D/S195 N, K84R/R103C/M121I/T272 M and R106H/G327S). Site-directed mutagenesis further yielded quadruple mutants A83D/M121I/K251E/G327S and A83D/M121I/S195 N/T272 M, both of which had improved activity after incubation in methanol. The km and kcat values of these mutants vary marginally with the wild-type enzyme in the methanol/substrate mixture. Thermally induced unfolding of mutants was accompanied with some loss of secondary structure content. The root mean square deviations (RMSD) and B-factors revealed that changes in the structural organization are intertwined with an interplay of the protein backbone with organic solvents. Spatially exposed charged residues showed correlations between the solvation dynamics of the methanol solvent and the hydrophobicity of the residues. The short distances of the radial distribution function provided the required distances for hydrogen bond formation and hydrophobic interactions. These dynamic changes demonstrate newly formed structural interactions could be targeted and incorporated experimentally on the basis of solvent mobility and mutant residues.


Asunto(s)
Geobacillus , Lipasa , Estabilidad de Enzimas , Geobacillus/genética , Geobacillus/metabolismo , Lipasa/genética , Lipasa/metabolismo , Metanol , Solventes
12.
Microbiology (Reading) ; 167(1)2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33320079

RESUMEN

Geobacillus kaustophilus HTA426, a thermophilic Gram-positive bacterium, feeds on inositol as its sole carbon source, and an iol gene cluster required for inositol catabolism has been postulated with reference to the iol genes in Bacillus subtilis. The iol gene cluster of G. kaustophilus comprises two tandem operons induced in the presence of inositol; however, the mechanism underlying this induction remains unclear. B. subtilis iolQ is known to be involved in the regulation of iolX encoding scyllo-inositol dehydrogenase, and its homologue in HTA426 was found two genes upstream of the first gene (gk1899) of the iol gene cluster and was termed iolQ in G. kaustophilus. When iolQ was inactivated in G. kaustophilus, not only cellular myo-inositol dehydrogenase activity due to gk1899 expression but also the transcription of the two iol operons became constitutive. IolQ was produced and purified as a C-terminal histidine (His)-tagged fusion protein in Escherichia coli and subjected to an in vitro gel electrophoresis mobility shift assay to examine its DNA-binding property. It was observed that IolQ bound to the DNA fragments containing each of the two iol promoter regions and that DNA binding was antagonized by myo-inositol. Moreover, DNase I footprinting analyses identified two tandem binding sites of IolQ within each of the iol promoter regions. By comparing the sequences of the binding sites, a consensus sequence for IolQ binding was deduced to form a palindrome of 5'-RGWAAGCGCTTSCY-3' (where R=A or G, W=A or T, S=G or C, and Y=C or T). IolQ functions as a transcriptional repressor regulating the induction of the two iol operons responding to myo-inositol.


Asunto(s)
Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Geobacillus/metabolismo , Inositol/metabolismo , Proteínas Represoras/metabolismo , Proteínas Bacterianas/genética , Sitios de Unión , Geobacillus/genética , Familia de Multigenes , Operón , Unión Proteica , Proteínas Represoras/genética
13.
Int J Biol Macromol ; 168: 261-271, 2021 Jan 31.
Artículo en Inglés | MEDLINE | ID: mdl-33301847

RESUMEN

The prospects of industrial uses of microbial enzymes have increased greatly during the 21st century. Fused lipolytic enzymes (where one or both fused domains possess lipolytic activity) is a rapidly growing group of industrial biocatalysts. However, the most effective fusion strategy, catalytic behavior of each domain and influence of added linkers on physicochemical and kinetic characteristics of such biocatalysts has not been yet explored. In this study the functionality of individual domains in fused lipolytic enzymes, while using GDEst-lip, GDLip-lip and GDEst-est enzymes as a model system, is analyzed for the first time. Analysis of mutant GDEst-lip, GDLip-lip and GDEst-est variants, where one domain is inactive, showed that both domains retained their activity, although the reduction in specific activity of individual domains has been detected. Moreover, experimental data proposed that the N-terminal domain mostly influenced the thermostability, while the C-terminal domain was responsible for thermal activity. GDEst-lip variants fused by using rigid (EAAELAAE) and flexible (GGSELSGG) linkers indicated that a unique restriction site or a rigid linker is the most preferable fusion strategy to develop new chimeric biocatalysts with domains of Geobacillus lipolytic enzymes.


Asunto(s)
Esterasas/química , Geobacillus/enzimología , Lipasa/química , Secuencia de Aminoácidos , Proteínas Bacterianas/química , Catálisis , Estabilidad de Enzimas , Esterasas/metabolismo , Geobacillus/metabolismo , Cinética , Lipasa/metabolismo , Lipólisis , Especificidad por Sustrato
14.
N Biotechnol ; 61: 29-39, 2021 Mar 25.
Artículo en Inglés | MEDLINE | ID: mdl-33188978

RESUMEN

The production, characterization and bioactivities of exopolysaccharides (EPSs) from a thermophilic bacterium Geobacillus sp. strain WSUCF1 were investigated. Using glucose as a carbon source 525.7 mg/L of exoproduct were produced in a 40-L bioreactor at 60 °C. Two purified EPSs were obtained: EPS-1 was a glucomannan containing mannose and glucose in a molar ratio of 1:0.21, while EPS-2 was composed of mannan only. The molecular weights of both EPSs were estimated to be approximately 1000 kDa, their FTIR and NMR spectra indicated the presence of α-type glycosidic bonds in a linear structure, and XRD analysis indicated a low degree of crystallinity of 0.11 (EPS-1) and 0.27 (EPS-2). EPS-1 and EPS-2 demonstrated high degradation temperatures of 319 °C and 314 °C, respectively, and non-cytotoxicity to HEK-293 cells at 2 and 3 mg/mL, respectively. In addition, both showed antioxidant activities. EPSs from strain WSUCF1 may expand the applications of microorganisms isolated from extreme environments and provide a valuable resource for exploitation in biomedical fields such as drug delivery carriers.


Asunto(s)
Geobacillus/química , Polisacáridos Bacterianos/biosíntesis , Temperatura , Reactores Biológicos , Geobacillus/metabolismo , Células HEK293 , Humanos , Polisacáridos Bacterianos/química
15.
OMICS ; 24(12): 756-765, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-33085568

RESUMEN

Thermophilic microorganisms that thrive in extreme environments are of great importance because they express heat-resistant enzymes with the potential to serve as biocatalysts in industrial applications. Thermal proteome profiling (TPP) is a multiplexed quantitative mass spectrometry method for analyses of structural information and melting behavior of thousands of proteins, simultaneously determining the thermal denaturation profiles of each protein. We report, in this study, TPP applied to a thermophilic bacterial proteome, a recently isolated strain of Geobacillus thermoleovorans named as ARTRW1. The proteome was investigated in terms of thermostable enzymes that are relevant to industrial applications. In this study, we present the thermostability profiles of its 868 proteins. The majority of G. thermoleovorans proteome was observed to melt between 62.5°C and 72°C, with melting point (Tm) mean value of 68.1°C ± 6.6°C. Unfolding characteristics of several enzymes, including amylase, protease, and lipase, were demonstrated which are highly informative in terms of their applicability to specific industrial processes. A significant correlation was observed between protein melting temperature and the structural features such as molecular weight and abundance, whereas correlations were modest or weak in relation to the α-helix structure percentages. Taken together, we demonstrated a system-wide melting profile analysis of a thermal proteome and listed proteins with elevated Tm values that are highly promising for applications in medicine, food engineering, and cosmetics in particular. The extracted Tm values were found similar to those obtained by biophysical methods applied to purified proteins. TPP analysis has significant industrial and biomedical potentials to accelerate thermophilic enzyme research and innovation.


Asunto(s)
Proteínas Bacterianas/metabolismo , Geobacillus/metabolismo , Proteoma , Proteómica , Proteínas Bacterianas/química , Espectrometría de Masas , Desnaturalización Proteica , Ingeniería de Proteínas , Estabilidad Proteica , Proteómica/métodos , Temperatura
16.
Sci Rep ; 10(1): 17047, 2020 10 12.
Artículo en Inglés | MEDLINE | ID: mdl-33046790

RESUMEN

Given our vast lignocellulosic biomass reserves and the difficulty in bioprocessing them without expensive pretreatment and fuel separation steps, the conversion of lignocellulosic biomass directly into electricity would be beneficial. Here we report the previously unexplored capabilities of thermophilic Geobacillus sp. strain WSUCF1 to generate electricity directly from such complex substrates in microbial fuel cells. This process obviates the need for exogenous enzymes and redox mediator supplements. Cyclic voltammetry and chromatography studies revealed the electrochemical signatures of riboflavin molecules that reflect mediated electron transfer capabilities of strain WSUCF1. Proteomics and genomics analysis corroborated that WSUCF1 biofilms uses type-II NADH dehydrogenase and demethylmenaquinone methyltransferase to transfer the electrons to conducting anode via the redox active pheromone lipoproteins localized at the cell membrane.


Asunto(s)
Fuentes de Energía Bioeléctrica , Electricidad , Geobacillus/metabolismo , Lignina/metabolismo , Biomasa
17.
BMC Biotechnol ; 20(1): 36, 2020 06 29.
Artículo en Inglés | MEDLINE | ID: mdl-32600313

RESUMEN

BACKGROUND: Esterases are widely distributed in nature and have important applications in medical, industrial and physiological. Recently, the increased demand for flavor esters has prompted the search of catalysts like lipases and esterases. Esterases from thermophiles also show thermal stability at elevated temperatures and have become enzymes of special interest in biotechnological applications. Although most of esterases catalyzed reactions are carried out in toxic and inflammable organic solvents, the solvent-free system owning many advantages such as low cost and easy downstream processing. RESULTS: The gene estGSU753 from Geobacillus subterraneus DSM13552 was cloned, sequenced and overexpressed into Escherichia coli BL21 (DE3). The novel gene has an open reading frame of 753 bp and encodes 250-amino-acid esterase (EstGSU753). The sequence analysis showed that the protein contains a catalytic triad formed by Ser97, Asp196 and His226, and the Ser of the active site is located in the conserved motif Gly95-X-Ser97-X-Gly99 included in most esterases and lipases. The protein catalyzed the hydrolysis of pNP-esters of different acyl chain lengths, and the enzyme specific activity was 70 U/mg with the optimum substrate pNP-caprylate. The optimum pH and temperature of the recombinant enzyme were 8.0 and 60 °C respectively. The resulting EstGSU753 showed remarkable stability against methanol. After the incubation at 50% methanol for 9 days, EstGSU753 retained 50% of its original activity. Even incubation at 90% methanol for 35 h, EstGSU753 retained 50% of its original activity. Also, the preliminary study of the transesterification shows the potential value in synthesis of short-chain flavor esters in a solvent-free system, and more than 99% conversion was obtained in 6 h (substrate: cinnamyl alcohol, 1.0 M). CONCLUSIONS: This is the first report of esterase gene cloning from Geobacillus subterraneus with detailed enzymatic properties. This methanol-stable esterase showed potential value in industrial applications especially in the perfume industry.


Asunto(s)
Cinamatos/química , Esterasas/metabolismo , Geobacillus/metabolismo , Solventes/química , Proteínas Bacterianas/genética , Biocatálisis , Clonación Molecular , Estabilidad de Enzimas , Escherichia coli/genética , Esterasas/genética , Geobacillus/genética , Concentración de Iones de Hidrógeno , Cinética , Lipasa/metabolismo , Metanol , Proteínas Recombinantes/genética , Especificidad por Sustrato , Temperatura
18.
Proc Natl Acad Sci U S A ; 117(8): 4071-4077, 2020 02 25.
Artículo en Inglés | MEDLINE | ID: mdl-32041886

RESUMEN

Copper-containing nitrite reductases (CuNIRs) transform nitrite to gaseous nitric oxide, which is a key process in the global nitrogen cycle. The catalytic mechanism has been extensively studied to ultimately achieve rational control of this important geobiochemical reaction. However, accumulated structural biology data show discrepancies with spectroscopic and computational studies; hence, the reaction mechanism is still controversial. In particular, the details of the proton transfer involved in it are largely unknown. This situation arises from the failure of determining positions of hydrogen atoms and protons, which play essential roles at the catalytic site of CuNIRs, even with atomic resolution X-ray crystallography. Here, we determined the 1.50 Šresolution neutron structure of a CuNIR from Geobacillus thermodenitrificans (trimer molecular mass of ∼106 kDa) in its resting state at low pH. Our neutron structure reveals the protonation states of catalytic residues (deprotonated aspartate and protonated histidine), thus providing insights into the catalytic mechanism. We found that a hydroxide ion can exist as a ligand to the catalytic Cu atom in the resting state even at a low pH. This OH-bound Cu site is unexpected from previously given X-ray structures but consistent with a reaction intermediate suggested by computational chemistry. Furthermore, the hydrogen-deuterium exchange ratio in our neutron structure suggests that the intramolecular electron transfer pathway has a hydrogen-bond jump, which is proposed by quantum chemistry. Our study can seamlessly link the structural biology to the computational chemistry of CuNIRs, boosting our understanding of the enzymes at the atomic and electronic levels.


Asunto(s)
Cobre/química , Cristalografía/métodos , Geobacillus/enzimología , Nitrito Reductasas/química , Nitrito Reductasas/metabolismo , Dominio Catalítico , Cristalización , Regulación Bacteriana de la Expresión Génica/fisiología , Regulación Enzimológica de la Expresión Génica/fisiología , Geobacillus/genética , Geobacillus/metabolismo , Modelos Moleculares , Nitrito Reductasas/genética , Conformación Proteica
19.
J Hazard Mater ; 384: 121271, 2020 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-31611021

RESUMEN

Land spreading of sewage sludge is a major source of environmental microplastics (MPs) contamination. However, conventional sludge treatments are inefficient at removing sludge-based MPs. Herein, hyperthermophilic composting (hTC) technology is proposed and demonstrated in full-scale (200 t) for in situ biodegradation of sludge-based MPs. After 45 days of hTC treatment, 43.7% of the MPs was removed from the sewage sludge, which is the highest value ever reported for MPs biodegradation. The underlying mechanisms of MPs removal were investigated in lab-scale polystyrene-microplastics (PS-MPs) biodegradation experiments. The hTC inoculum degraded 7.3% of the PS-MPs at 70 °C in 56 days, which was about 6.6 times higher than that of the conventional thermophilic composting (cTC) inoculum at 40 °C. Analyses of the molecular weight and physicochemical properties of the PS-MPs residuals indicated that hyperthermophilic bacteria in hTC accelerated PS-MPs biodegradation through excellent bio-oxidation performance. High-throughput sequencing suggested that Thermus, Bacillus, and Geobacillus were the dominant bacteria responsible for the highly efficient biodegradation during hTC. These results reveal the critical role of hyperthermophilic bacteria in MPs biodegradation during hTC, highlighting a promising strategy for sludge-based MPs removal from the real environment.


Asunto(s)
Compostaje/métodos , Microplásticos/metabolismo , Aguas del Alcantarillado/microbiología , Bacillus/metabolismo , Biodegradación Ambiental , Geobacillus/metabolismo , Thermus/metabolismo
20.
J Biosci ; 44(5)2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31719233

RESUMEN

A total of 41 isolates were obtained from various samples (soil, mud, and water) of Surajkund hot spring, Jharkhand, at three different isolation temperatures of 50°C, 60°C, and 70°C. However, our interest was in the thermophilic strains that were isolated at 60°C and 70°C. Four isolates at 70°C (BITSNS038, BITSNS039, BITSNS040, BITSNS041) are the producers of thermozymes, namely amylase, xylanase, and cellulase, respectively. The highlights of the present study also showed that three out of four isolates demonstrated all three enzymatic activities, i.e. amylolytic, xylanolytic and cellulolytic on agar plate assay conditions at 70°C. One of the isolates, BITSNS038, was further chosen for phenotypic characterization as well as 16S rRNA gene sequencing and was affiliated to Geobacillus icigianus. The presence of Geobacillus icigianus was reported first time from hot spring, Surajkund, which showed amylolytic index of 1.58, xylanolytic index of 1.5 and cellulolytic index of 2.3 based on plate assay, and amylase activity of 0.81 U/mL, xylanase activity of 0.72 U/mL and very less cellulase activity of 0.15 U/mL after 24 h of growth in submerged conditions. One isolate at 60°C BITSNS024 was found to exhibit maximum amylase activity with an enzymatic index value of 3.5 and was identified as Anoxybacillus gonensis.


Asunto(s)
Amilosa/metabolismo , Celulosa/metabolismo , Geobacillus/metabolismo , Manantiales de Aguas Termales/microbiología , Xilanos/metabolismo , Amilasas/metabolismo , Celulasa/metabolismo , Endo-1,4-beta Xilanasas/metabolismo , Geobacillus/enzimología , Geobacillus/genética , ARN Ribosómico 16S/genética
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