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1.
Nat Commun ; 14(1): 2050, 2023 04 12.
Artículo en Inglés | MEDLINE | ID: mdl-37041173

RESUMEN

Singapore grouper iridovirus (SGIV), one of the nucleocytoviricota viruses (NCVs), is a highly pathogenic iridovirid. SGIV infection results in massive economic losses to the aquaculture industry and significantly threatens global biodiversity. In recent years, high morbidity and mortality in aquatic animals have been caused by iridovirid infections worldwide. Effective control and prevention strategies are urgently needed. Here, we present a near-atomic architecture of the SGIV capsid and identify eight types of capsid proteins. The viral inner membrane-integrated anchor protein colocalizes with the endoplasmic reticulum (ER), supporting the hypothesis that the biogenesis of the inner membrane is associated with the ER. Additionally, immunofluorescence assays indicate minor capsid proteins (mCPs) could form various building blocks with major capsid proteins (MCPs) before the formation of a viral factory (VF). These results expand our understanding of the capsid assembly of NCVs and provide more targets for vaccine and drug design to fight iridovirid infections.


Asunto(s)
Lubina , Iridovirus , Ranavirus , Animales , Iridovirus/metabolismo , Proteínas de la Cápside/metabolismo , Singapur , Ranavirus/metabolismo , Ensamble de Virus
2.
Viruses ; 14(5)2022 04 27.
Artículo en Inglés | MEDLINE | ID: mdl-35632650

RESUMEN

The Andrias davidianus ranavirus (ADRV) is a member of the family Iridoviridae and belongs to the nucleocytoplasmic large DNA viruses. Based on genomic analysis, an ADRV-encoding protein, ADRV 12L, and its homologs from other iridoviruses were predicted as Rad2 family proteins based on the conserved amino acids, domains, and secondary structures. Expression analysis showed that the transcription of ADRV 12L started at 4 h post infection, and its expression was not inhibited by a DNA-replication inhibitor. Meanwhile, immunofluorescence localization showed that ADRV 12L mainly localized in viral factories and colocalized with the viral nascent DNA, which hinted at a possible role in DNA replication. Furthermore, a mutant ADRV lacking 12L (ADRV-Δ12L) was constructed. In both luciferase assays based on homologous recombination (HR) and double-strand break repair (DSBR) that followed, ADRV-Δ12L induced less luciferase activity than the wild-type ADRV, indicating that HR and DSBR were impaired in ADRV-Δ12L infected cells. In addition, infection with ADRV-Δ12L resulted in smaller plaque sizes and lower viral titers than that with wild-type ADRV, indicating an important role for 12L in efficient virus infection. Therefore, the results suggest that Rad2 homologs encoded by iridovirus have important roles in HR- and DSBR-process of the viral DNA and, thus, affect virus replication and the production of progeny virions.


Asunto(s)
Ranavirus , Animales , Reparación del ADN , ADN Viral/genética , ADN Viral/metabolismo , Ranavirus/genética , Ranavirus/metabolismo , Urodelos , Replicación Viral
3.
Viruses ; 14(5)2022 05 02.
Artículo en Inglés | MEDLINE | ID: mdl-35632694

RESUMEN

As nucleocytoplasmic large DNA viruses, replication of ranaviruses (genus Ranavirus, family Iridoviridae) involves a series of viral and host proteins. We have described that the replication and transcription machinery of Andrias davidianus ranavirus (ADRV) which was isolated from the Chinese giant salamander contained host factors. Here, a new host factor, the MutS homolog 2 (MSH2), was proved as an important protein that participated in ADRV infection. Expression of MSH2 was stable during ADRV infection in cultured cells and it localized at the cytoplasmic viral factories and colocalized with virus nascent DNA, indicating its possible role in virus genome replication. Investigation of the viral proteins that interacted with MSH2 by co-immunoprecipitation showed that A. davidianus MSH2 can interact with ADRV-35L (possible components associated with virus transcription), ADRV-47L (virus DNA polymerase), and ADRV-98R. Further knockdown MSH2 expression by RNAi significantly reduced the late gene expression of ADRV. Additionally, MSH2 knockout by CRISPR/Cas9 significantly reduced viral titers, genome replication, and late gene transcription of ADRV. Thus, the current study proved that ADRV can engage cellular MSH2 for its efficient genome replication and late gene transcription, which provided new information for understanding the roles of host factors in ranavirus replication and transcription.


Asunto(s)
Infecciones por Virus ADN , Ranavirus , Animales , Reparación de la Incompatibilidad de ADN , ADN Viral/metabolismo , Proteína 2 Homóloga a MutS/genética , Proteína 2 Homóloga a MutS/metabolismo , Ranavirus/genética , Ranavirus/metabolismo , Urodelos
4.
Infect Genet Evol ; 84: 104379, 2020 10.
Artículo en Inglés | MEDLINE | ID: mdl-32497680

RESUMEN

The Ranavirus (one genus of Iridovidae family) is an emerging pathogen that infects fish, amphibian, and reptiles, and causes great economical loss and ecological threat to farmed and wild animals globally. The major capsid protein (MCP) has been used as genetic typing marker and as target to design vaccines. Herein, the codon usage pattern of 73 MCP genes of Ranavirus and Lymphocystivirus are studied by calculating effective number of codons (ENC), relative synonymous codon usage (RSCU), codon adaptation index (CAI), and relative codon deoptimization index (RCDI), and similarity index (SiD). The Ranavirus are confirmed to be classified into five groups by using phylogenetic analysis, and varied nucleotide compositions and hierarchical cluster analysis based on RSCU. The results revealed different codon usage patterns among Lymphocystivirus and five groups of Ranavirus. Ranavirus had six over-represented codons ended with G/C nucleotide, while Lymphocystivirus had six over-represented codons ended with A/T nucleotide. A comparative analysis of parameters that define virus and host relatedness in terms of codon usage were analyzed indicated that Amphibian-like ranaviruses (ALRVs) seem to possess lower ENC values and higher CAIs in contrast to other ranaviruses isolated from fishes, and two groups (FV3-like and CMTV-like group) of them had received higher selection pressure from their hosts as having higher relative codon deoptimization index (RCDI) and similarity index (SiD). The correspondence analysis (COA) and Spearman's rank correlation analyses revealed that nucleotide compositions, relative dinucleotide frequency, mutation pressure, and natural translational selection shape the codon usage pattern in MCP genes and the ENC-GC3S and neutrality plots indicated that the natural selection is the predominant factor. These results contribute to understanding the evolution of Ranavirus and their adaptions to their hosts.


Asunto(s)
Proteínas de la Cápside/metabolismo , Regulación Viral de la Expresión Génica/fisiología , Iridoviridae/metabolismo , Ranavirus/metabolismo , Proteínas de la Cápside/genética , Uso de Codones , Evolución Molecular , Iridoviridae/genética , Filogenia , Ranavirus/genética
5.
Virology ; 543: 76-83, 2020 04.
Artículo en Inglés | MEDLINE | ID: mdl-32174301

RESUMEN

Ranaviruses have been associated with chelonian mortality. In Canada, the first two cases of ranavirus were detected in turtles in 2018 in Ontario, although a subsequent survey of its prevalence failed to detect additional positive cases. To confirm the prevalence of ranavirus in turtles in Ontario, we used a more sensitive method to investigate if lower level persistent infection was present in the population. Here we report results via a combination of qPCR, PCR, Sanger sequencing and genome sequencing from turtles from across Ontario, with no clinical signs of illness. We found 2 positives with high viral load and 5 positives with low viral load. Histopathology found subtle histological changes. DNA sequences identified two types of frog virus 3 (FV3), and genome sequencing identified a ranavirus similar to wild-type FV3. Our results show that the virus has been present in Ontario's turtles as subclinical infections.


Asunto(s)
Infecciones por Virus ADN/veterinaria , Ranavirus/genética , Tortugas/virología , Animales , Infecciones por Virus ADN/epidemiología , Infecciones por Virus ADN/patología , Agua Dulce , Ontario , Filogenia , Prevalencia , Ranavirus/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Carga Viral/genética , Carga Viral/veterinaria
6.
Viruses ; 11(7)2019 06 29.
Artículo en Inglés | MEDLINE | ID: mdl-31261956

RESUMEN

Ranavirus cross-species infections have been documented, but the viral proteins involved in the interaction with cell receptors have not yet been identified. Here, viral cell-binding proteins and their cognate cellular receptors were investigated using two ranaviruses, Andrias davidianus ranavirus (ADRV) and Rana grylio virus (RGV), and two different cell lines, Chinese giant salamander thymus cells (GSTC) and Epithelioma papulosum cyprinid (EPC) cells. The heparan sulfate (HS) analog heparin inhibited plaque formation of ADRV and RGV in the two cell lines by more than 80% at a concentration of 5 µg/mL. In addition, enzymatic removal of cell surface HS by heparinase I markedly reduced plaque formation by both viruses and competition with heparin reduced virus-cell binding. These results indicate that cell surface HS is involved in ADRV and RGV cell binding and infection. Furthermore, recombinant viral envelope proteins ADRV-58L and RGV-53R bound heparin-Sepharose beads implying the potential that cell surface HS is involved in the initial interaction between ranaviruses and susceptible host cells. To our knowledge, this is the first report identifying cell surface HS as ranavirus binding factor and furthers understanding of interactions between ranaviruses and host cells.


Asunto(s)
Infecciones por Virus ADN/veterinaria , Heparitina Sulfato/metabolismo , Ranavirus/metabolismo , Receptores Virales/metabolismo , Animales , Carpas , Línea Celular , Infecciones por Virus ADN/metabolismo , Infecciones por Virus ADN/virología , Ranavirus/genética , Urodelos , Proteínas Virales/genética , Proteínas Virales/metabolismo
7.
J Struct Biol ; 205(2): 189-195, 2019 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-30625366

RESUMEN

Caspase recruitment domain (CARD)-only proteins (COPs), regulate apoptosis, inflammation, and innate immunity. They inhibit the assembly of NOD-like receptor complexes such as the inflammasome and NODosome, which are molecular complexes critical for caspase-1 activation. COPs are known to interact with either caspase-1 CARD or RIP2 CARD via a CARD-CARD interaction, and inhibit caspase-1 activation or further downstream signaling. In addition to the human COPs, Pseudo-ICE, INCA, and ICEBERG, several viruses also contain viral COPs that help them escape the host immune system. To elucidate the molecular mechanism of host immunity inhibition by viral COPs, we solved the structure of a viral COP for the first time. Our structure showed that viral COP forms a structural transformation-mediated dimer, which is unique and has not been reported in any structural study of a CARD domain. Based on the current structure, and the previously solved structures of other death domain superfamily members, we propose that structural transformation-mediated dimerization might be a new strategy for dimer assembly in the death domain superfamily.


Asunto(s)
Proteínas/química , Proteínas/metabolismo , Ranavirus/química , Ranavirus/metabolismo , Apoptosis , Dominio de Reclutamiento y Activación de Caspasas , Dimerización , Humanos
8.
Virus Res ; 246: 46-54, 2018 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-29341876

RESUMEN

As the major viral pathogen of grouper aquaculture, Singapore grouper iridovirus (SGIV) has caused great economic losses in China and Southeast Asia. In the previous study, we have generated highly specific ssDNA aptamers against SGIV-infected grouper spleen cells (GS) by Systematic Evolution of Ligands by Exponential Enrichment technology (SELEX), in which Q2 had the highest binding affinity of 16.43 nM. In this study, we would try to identify the specific sequences in the aptamer Q2 that exhibited the high binding affinity to SGIV-infected cells by truncating the original Q2 into some different specific segments. We first evaluated the specificity and binding affinity of these truncated aptamers to SGIV-infected cells by flow cytometry, fluorescent imaging of cells and aptamer-based enzyme-linked apta-sorbent assay (ELASA). We then performed cytotoxicity analysis, assessment of the inhibitory effects upon SGIV infection and the celluar internalization kinetics of each truncated aptamer. Compared to the initial Q2, one of the truncated aptamer Q2-C5 showed a 3-fold increase in the binding affinity for SGIV-infected cells, and held more effective inhibitory effects, higher internalization kinetics and stability. Hence, the aptamer's truncated methods could be applied in the research of identifying aptamer's key sequences. The shorter, structure optimizing aptamer showed more excellent performance over the originally selected aptamer, which could potentially be applied in developing commercial detection probes for the early and rapid diagnosis of SGIV infection, and highly specific therapeutic drugs against SGIV infection.


Asunto(s)
Antivirales/farmacología , Aptámeros de Nucleótidos/farmacología , Infecciones por Virus ADN/terapia , ADN Viral/química , Enfermedades de los Peces/terapia , Ranavirus/efectos de los fármacos , Animales , Antivirales/síntesis química , Antivirales/metabolismo , Aptámeros de Nucleótidos/síntesis química , Aptámeros de Nucleótidos/metabolismo , Emparejamiento Base , Lubina , Transporte Biológico , Infecciones por Virus ADN/veterinaria , Infecciones por Virus ADN/virología , ADN de Cadena Simple/antagonistas & inhibidores , ADN de Cadena Simple/química , ADN de Cadena Simple/metabolismo , ADN Viral/antagonistas & inhibidores , ADN Viral/metabolismo , Enfermedades de los Peces/virología , Conformación de Ácido Nucleico , Ranavirus/genética , Ranavirus/metabolismo , Bazo/efectos de los fármacos , Bazo/patología , Bazo/virología , Relación Estructura-Actividad
9.
Virus Res ; 217: 133-42, 2016 06 02.
Artículo en Inglés | MEDLINE | ID: mdl-26956473

RESUMEN

Tiger frog virus (TFV) belongs to the genus Ranavirus, family Iridoviridae, and causes severe mortality in commercial cultures in China. TFV ORF080L is a gene homolog of lipopolysaccharide-induced TNF-α factor (LITAF), which is a regulator in endosome-to-lysosome trafficking through its function in the endosomal sorting complex required for transport machinery. The characteristics and biological roles of TFV ORF080L were identified. TFV ORF080L was predicted to encode an 84-amino acid peptide (VP080L). It had high-sequence identity with mammalian LITAF, but lacked the N-terminus of LITAF, which contains two PPXY motifs. Transcription and protein level analyses showed that TFV ORF080L was a late viral gene. Localization in the virons also showed that TFV VP080L was a viral structural protein. Immunofluorescence staining showed that TFV ORF080L was predominantly colocalized with plasma membrane and partly distributed with the late endosome in infected HepG2 cells. SiRNA-mediated TFV ORF080L silencing decreased viral reproduction. Moreover, TFV ORF080L interacted with human/zebrafish LITAF and impaired EGF-induced EGFR degradation, thereby indicating that TFV ORF080L played a role in endosome-to-lysosome trafficking. These findings suggested that TFV ORF080L might negate the function of cellular LITAF to impair endosomal sorting and trafficking. Results provide a clue to the link between the dysregulated endosomal trafficking and iridovirus pathogenesis.


Asunto(s)
Receptores ErbB/metabolismo , Ranavirus/patogenicidad , Factor de Necrosis Tumoral alfa/metabolismo , Proteínas Estructurales Virales/farmacología , Animales , Endosomas/metabolismo , Factor de Crecimiento Epidérmico/metabolismo , Células HEK293 , Células HeLa , Células Hep G2 , Humanos , Lisosomas/metabolismo , Ratones , Proteolisis/efectos de los fármacos , Ranavirus/genética , Ranavirus/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Secuencia de Proteína , Transcripción Genética , Proteínas Estructurales Virales/metabolismo , Virión , Replicación Viral
10.
Virus Res ; 214: 33-8, 2016 Mar 02.
Artículo en Inglés | MEDLINE | ID: mdl-26806670

RESUMEN

Ranaviruses (family Iridoviridae, genus Ranavirus) have been recognized as emerging infectious pathogens and caused a great loss to the global biodiversity. Thymidine kinase (TK) and deoxyuridine triphosphatase (dUTPase, DUT, encoded by ORF 67R) are ubiquitous, existing in iridoviruses and other organisms. Previous studies showed that TK and DUT could be individually knocked out without impeding viral replication. In this study, we tried to insert two fluorescence genes into the above loci. We started with Δ67R-RGV, a recently generated recombinant Rana grylio virus (RGV) with the whole DUT replaced by enhanced green fluorescence protein (EGFP) gene. Then, a red fluorescence protein (RFP) gene initiated by RGV immediate-early (IE) ICP18 gene promoter was inserted into TK locus through homologous recombination. A novel recombinant virus, ΔDUT, TK-RGV, was generated by nine successive rounds of plaque isolation using RFP selection. All of the plaques produced by this recombinant virus could emit both green and red fluorescence. Furthermore, one-step and multiple-step growth curves of ΔDUT, TK-RGV were similar to those of wt-RGV and Δ67R-RGV. In conclusion, a novel dual-fluorescence labeled recombinant iridovirus in which DUT and TK gene locus were simultaneously used for foreign gene expression was constructed.


Asunto(s)
Expresión Génica , Sitios Genéticos , Pirofosfatasas/genética , Ranavirus/genética , Timidina Quinasa/genética , Proteínas Virales/genética , Animales , Línea Celular , Células Cultivadas , Orden Génico , Genes Reporteros , Ingeniería Genética , Plásmidos/genética , Ranavirus/inmunología , Ranavirus/aislamiento & purificación , Ranavirus/metabolismo , Eliminación de Secuencia
11.
Virology ; 485: 162-70, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26264970

RESUMEN

To identify ranavirus virulence genes, we engineered Frog Virus 3 (FV3) knockout (KO) mutants defective for a putative viral caspase activation and recruitment domain-containing (CARD) protein (Δ64R-FV3) and a ß-hydroxysteroid dehydrogenase homolog (Δ52L-FV3). Compared to wild type (WT) FV3, infection of Xenopus tadpoles with Δ64R- or Δ52L-FV3 resulted in significantly lower levels of mortality and viral replication. We further characterized these and two earlier KO mutants lacking the immediate-early18kDa protein (FV3-Δ18K) or the truncated viral homolog of eIF-2α (FV3-ΔvIF-2α). All KO mutants replicated as well as WT-FV3 in non-amphibian cell lines, whereas in Xenopus A6 kidney cells replication of ΔvCARD-, ΔvßHSD- and ΔvIF-2α-FV3 was markedly reduced. Furthermore, Δ64R- and ΔvIF-2α-FV3 were more sensitive to interferon than WT and Δ18-FV3. Notably, Δ64R-, Δ18K- and ΔvIF-2α- but not Δ52L-FV3 triggered more apoptosis than WT FV3. These data suggest that vCARD (64R) and vß-HSD (52L) genes contribute to viral pathogenesis.


Asunto(s)
Proteínas Anfibias/genética , Infecciones por Virus ADN/virología , Regulación Viral de la Expresión Génica , Ranavirus/genética , Ranavirus/patogenicidad , Proteínas Anfibias/deficiencia , Animales , Proteínas Adaptadoras de Señalización CARD/deficiencia , Proteínas Adaptadoras de Señalización CARD/genética , Infecciones por Virus ADN/mortalidad , Infecciones por Virus ADN/patología , Factor 2 Eucariótico de Iniciación/genética , Factor 2 Eucariótico de Iniciación/metabolismo , Técnicas de Inactivación de Genes , Interacciones Huésped-Patógeno , Hidroxiesteroide Deshidrogenasas/deficiencia , Hidroxiesteroide Deshidrogenasas/genética , Larva/virología , Mutación , Ranavirus/metabolismo , Transducción de Señal , Análisis de Supervivencia , Virulencia , Replicación Viral , Xenopus laevis/virología
12.
Vet Res ; 44: 101, 2013 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-24143877

RESUMEN

Ranaviruses are emerging pathogens that have led to global impact and public concern. As a rarely endangered species and the largest amphibian in the world, the Chinese giant salamander, Andrias davidianus, has recently undergone outbreaks of epidemic diseases with high mortality. In this study, we isolated and identified a novel ranavirus from the Chinese giant salamanders that exhibited systemic hemorrhage and swelling syndrome with high death rate in China during May 2011 to August 2012. The isolate, designated Andrias davidianus ranavirus (ADRV), not only could induce cytopathic effects in different fish cell lines and yield high viral titers, but also caused severely hemorrhagic lesions and resulted in 100% mortality in experimental infections of salamanders. The complete genome of ADRV was sequenced and compared with other sequenced amphibian ranaviruses. Gene content and phylogenetic analyses revealed that ADRV should belong to an amphibian subgroup in genus Ranavirus, and is more closely related to frog ranaviruses than to other salamander ranaviruses. Homologous gene comparisons show that ADRV contains 99%, 97%, 94%, 93% and 85% homologues in RGV, FV3, CMTV, TFV and ATV genomes respectively. In addition, several variable major genes, such as duplicate US22 family-like genes, viral eukaryotic translation initiation factor 2 alpha gene and novel 75L gene with both motifs of nuclear localization signal (NLS) and nuclear export signal (NES), were predicted to contribute to pathogen virulence and host susceptibility. These findings confirm the etiologic role of ADRV in epidemic diseases of Chinese giant salamanders, and broaden our understanding of evolutionary emergence of ranaviruses.


Asunto(s)
Infecciones por Virus ADN/veterinaria , Genoma Viral , Ranavirus/genética , Urodelos , Secuencia de Aminoácidos , Animales , Infecciones por Virus ADN/virología , Datos de Secuencia Molecular , Filogenia , Ranavirus/química , Ranavirus/metabolismo , Alineación de Secuencia/veterinaria , Análisis de Secuencia de ADN/veterinaria
13.
J Gen Virol ; 94(Pt 12): 2759-2770, 2013 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-24062533

RESUMEN

Insulin-like growth factors (IGFs) play crucial roles in regulating cell differentiation, proliferation and apoptosis. In this study, a novel IGF homologue gene (IGF-like) encoded by Singapore grouper iridovirus (SGIV) ORF062R (termed SGIV-IGF), was cloned and characterized. The coding region of SGIV-IGF is 771 bp in length, with a variable number of tandem repeats (VNTR) locus at the 3'-end. We cloned one isoform of this novel gene, 582 bp in length, containing the predicted IGF domain and 3.6 copy numbers of the 27 bp repeat unit. SGIV-IGF was an early transcribed gene during viral infection, and SGIV-IGF was distributed predominantly in the cytoplasm with a diffused granular appearance. Intriguingly, overexpression of SGIV-IGF was able to promote the growth of grouper embryonic cells (GP cells) by promoting G1/S phase transition, which was at least partially dependent on its 3'-end VNTR locus. Furthermore, viral titre assay and real-time quantitative PCR (RT-qPCR) analysis proved that SGIV-IGF could promote SGIV replication in grouper cells. In addition, overexpression of SGIV-IGF mildly facilitated apoptosis in SGIV-infected non-host fathead minnow (FHM) cells. Together, our study demonstrated a novel functional gene of SGIV which may regulate viral replication and cellular processes through multiple mechanisms that appear to be cell type-dependent.


Asunto(s)
Apoptosis/efectos de los fármacos , Proliferación Celular/efectos de los fármacos , Perciformes/virología , Ranavirus/fisiología , Somatomedinas/farmacología , Replicación Viral/efectos de los fármacos , Animales , Células Cultivadas , Perfilación de la Expresión Génica , Iridovirus/clasificación , Iridovirus/genética , Iridovirus/metabolismo , Iridovirus/fisiología , Perciformes/embriología , Ranavirus/genética , Ranavirus/metabolismo , Singapur , Somatomedinas/genética , Somatomedinas/metabolismo , Proteínas Virales/genética , Proteínas Virales/metabolismo , Proteínas Virales/farmacología
14.
Dis Aquat Organ ; 96(3): 195-207, 2011 Oct 06.
Artículo en Inglés | MEDLINE | ID: mdl-22132498

RESUMEN

The Santee-Cooper ranaviruses doctor fish virus (DFV), guppy virus 6 (GV6), and largemouth bass virus (LMBV) are members of the genus Ranavirus within the family Iridoviridae. The major capsid protein (MCP) is a main structural protein of iridoviruses and supports the differentiation and classification of ranaviruses. Presently the complete sequence of the MCP gene is known for most ranaviruses with the exception of the Santee-Cooper ranaviruses. In the present study, the complete nucleotide sequence of the MCP gene of DFV, GV6, and LMBV was determined. DFV and GV6 are identical within the MCP gene sequence. The identity compared to the corresponding sequence in LMBV amounts to 99.21%. The MCP gene of DFV, GV6, and LMBV exhibits only approximately 78% identity compared to the respective gene of other ranaviruses. Based on the sequence data obtained in the present study, a Rana MCP polymerase chain reaction (PCR) and subsequent restriction fragment length polymorphism (RFLP) analysis were developed to identify and differentiate ranaviruses, including DFV, GV6, and LMBV.


Asunto(s)
Proteínas de la Cápside/genética , Regulación Viral de la Expresión Génica/fisiología , Ranavirus/genética , Ranavirus/metabolismo , Animales , Anuros , Secuencia de Bases , Línea Celular , ADN Viral/genética , Anotación de Secuencia Molecular , Filogenia , Ranavirus/clasificación
15.
BMC Microbiol ; 11: 56, 2011 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-21418572

RESUMEN

BACKGROUND: Ranaviruses (family Iridoviridae) are important pathogens of lower vertebrates. However, little is known about how they circumvent the immune response of their hosts. Many ranaviruses contain a predicted protein, designated vIF2α, which shows homology with the eukaryotic translation initiation factor 2α. In analogy to distantly related proteins found in poxviruses vIF2α might act as an inhibitor of the antiviral protein kinase PKR. RESULTS: We have characterized the function of vIF2α from Rana catesbeiana virus Z (RCV-Z). Multiple sequence alignments and secondary structure prediction revealed homology of vIF2α with eIF2α throughout the S1-, helical- and C-terminal domains. Genetic and biochemical analyses showed that vIF2α blocked the toxic effects of human and zebrafish PKR in a heterologous yeast system. Rather than complementing eIF2α function, vIF2α acted in a manner comparable to the vaccinia virus (VACV) K3L protein (K3), a pseudosubstrate inhibitor of PKR. Both vIF2α and K3 inhibited human PKR-mediated eIF2α phosphorylation, but not PKR autophosphorylation on Thr446. In contrast the E3L protein (E3), another poxvirus inhibitor of PKR, inhibited both Thr446 and eIF2α Ser51 phosphorylation. Interestingly, phosphorylation of eIF2α by zebrafish PKR was inhibited by vIF2α and E3, but not by K3. Effective inhibition of PKR activity coincided with increased PKR expression levels, indicative of relieved autoinhibition of PKR expression. Experiments with vIF2α deletion constructs, showed that both the N-terminal and helical domains were sufficient for inhibition of PKR, whereas the C-terminal domain was dispensable. CONCLUSIONS: Our results show that RCV-Z vIF2α is a functional inhibitor of human and zebrafish PKR, and probably functions in similar fashion as VACV K3. This constitutes an important step in understanding the interaction of ranaviruses and the host innate immune system.


Asunto(s)
Factor 2 Procariótico de Iniciación/metabolismo , Inhibidores de Proteínas Quinasas/farmacología , Ranavirus/metabolismo , Proteínas Virales/metabolismo , eIF-2 Quinasa/antagonistas & inhibidores , Secuencia de Aminoácidos , Animales , Humanos , Datos de Secuencia Molecular , Fosforilación , Factor 2 Procariótico de Iniciación/genética , Estructura Secundaria de Proteína , Ranavirus/genética , Alineación de Secuencia , Proteínas Virales/genética , Pez Cebra
16.
Virology ; 405(2): 448-56, 2010 Sep 30.
Artículo en Inglés | MEDLINE | ID: mdl-20633916

RESUMEN

Although previous work identified 12 complementation groups with possible roles in virus assembly, currently only one frog virus 3 protein, the major capsid protein (MCP), has been linked with virion formation. To identify other proteins required for assembly, we used an antisense morpholino oligonucleotide to target 53R, a putative myristoylated membrane protein, and showed that treatment resulted in marked reductions in 53R levels and a 60% drop in virus titers. Immunofluorescence assays confirmed knock down and showed that 53R was found primarily within viral assembly sites, whereas transmission electron microscopy detected fewer mature virions and, in some cells, dense granular bodies that may represent unencapsidated DNA-protein complexes. Treatment with a myristoylation inhibitor (2-hydroxymyristic acid) resulted in an 80% reduction in viral titers. Collectively, these data indicate that 53R is an essential viral protein that is required for replication in vitro and suggest it plays a critical role in virion formation.


Asunto(s)
Proteínas de la Membrana/metabolismo , Sistemas de Lectura Abierta/fisiología , Ranavirus/fisiología , Replicación Viral , Animales , Línea Celular , Técnica del Anticuerpo Fluorescente , Proteínas de la Membrana/genética , Microscopía Electrónica de Transmisión , Ácido Mirístico/metabolismo , Oligonucleótidos Antisentido , Sistemas de Lectura Abierta/genética , Ranavirus/genética , Ranavirus/metabolismo , Proteínas Virales/genética , Proteínas Virales/metabolismo , Virión/metabolismo , Ensamble de Virus
17.
Arch Virol ; 154(9): 1409-16, 2009.
Artículo en Inglés | MEDLINE | ID: mdl-19629635

RESUMEN

Singapore grouper iridovirus (SGIV), as a causative agent of serious systemic disease, causes significant economic losses in grouper aquaculture. In this study, a novel ICP18 homolog encoded by SGIV ORF086R was identified and characterized. Strikingly, ICP18 homologs can be found in all ranaviruses, but not in other sequenced large DNA viruses. SGIV ICP18 is an immediate-early gene and begins to be transcribed as early as 2 h post-infection (p.i.). Western blotting indicated that SGIV ICP18 is translated as early as 6 h p.i. and is a viral non-envelope protein. Subcellular localization analysis revealed that the SGIV ICP18 displays a finely punctate cytoplasmic pattern. Furthermore, overexpression of SGIV ICP18 can promote the growth of grouper embryonic cells (GP) and contribute to SGIV replication. These results should offer important insights into the pathogenesis of ranaviruses.


Asunto(s)
Lubina/virología , Infecciones por Virus ADN/veterinaria , Enfermedades de los Peces/virología , Proteínas Inmediatas-Precoces/fisiología , Ranavirus/fisiología , Replicación Viral , Secuencia de Aminoácidos , Animales , Proliferación Celular , Células Cultivadas , Citoplasma/metabolismo , Infecciones por Virus ADN/virología , Genes Virales , Proteínas Inmediatas-Precoces/genética , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Ranavirus/genética , Ranavirus/metabolismo , Alineación de Secuencia , Homología de Secuencia de Aminoácido
18.
Virol J ; 5: 83, 2008 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-18644137

RESUMEN

Frog virus 3 (FV3) is a large DNA virus that is the prototypic member of the family Iridoviridae. To examine levels of FV3 gene expression we generated a polyclonal antibody against the FV3 protein 75L. Following a FV3 infection in fathead minnow (FHM) cells 75L was found in vesicles throughout the cytoplasm as early as 3 hours post-infection. While 75L expressed strongly in FHM cells, our findings revealed no 75L expression in mammalian cells lines despite evidence of a FV3 infection. One explanation for the lack of gene expression in mammalian cell lines may be inefficient codon usage. As a result, 75L was codon optimized and transfection of the codon optimized construct resulted in detectable expression in mammalian cells. Therefore, although FV3 can infect and replicate in mammalian cell lines, the virus may not express its full complement of genes due to inefficient codon usage in mammalian species.


Asunto(s)
Línea Celular , Cyprinidae/metabolismo , Cyprinidae/virología , Expresión Génica , Mamíferos/metabolismo , Mamíferos/virología , Ranavirus/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Chlorocebus aethiops , Codón/genética , Cyprinidae/genética , Células HeLa , Humanos , Mamíferos/genética , Datos de Secuencia Molecular , Ranavirus/metabolismo
19.
J Gen Virol ; 89(Pt 8): 1866-1872, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18632957

RESUMEN

Viral envelope proteins have been proposed to play significant roles in virus infection and assembly. In this study, an envelope protein gene, 53R, was cloned and characterized from Rana grylio virus (RGV), a member of the family Iridoviridae. Database searches found its homologues in all sequenced iridoviruses, and sequence alignment revealed several conserved structural features shared by virus capsid or envelope proteins: a myristoylation site, two predicted transmembrane domains and two invariant cysteine residues. Subsequently, RT-PCR and Western blot detection revealed that the transcripts encoding RGV 53R and the protein itself appeared late during infection of fathead minnow cells and that their appearance was blocked by viral DNA replication inhibitor, indicating that RGV 53R is a late expression gene. Moreover, immunofluorescence localization found an association of 53R with virus factories in RGV-infected cells, and this association was further confirmed by expressing a 53R-GFP fusion protein in pEGFP-N3/53R-transfected cells. Furthermore, detergent extraction and Western blot detection confirmed that RGV 53R was associated with virion membrane. Therefore, the current data suggest that RGV 53R is a novel viral envelope protein and that it may play an important role in virus assembly. This is thought to be the first report on a viral envelope protein that is conserved in all sequenced iridoviruses.


Asunto(s)
Ranavirus/metabolismo , Proteínas del Envoltorio Viral , Secuencia de Aminoácidos , Animales , Línea Celular , Clonación Molecular , Cyprinidae , Datos de Secuencia Molecular , Sistemas de Lectura Abierta , Ranavirus/genética , Ranidae/virología , Análisis de Secuencia de ADN , Proteínas del Envoltorio Viral/química , Proteínas del Envoltorio Viral/genética , Proteínas del Envoltorio Viral/metabolismo , Ensamble de Virus
20.
Micron ; 38(6): 599-606, 2007.
Artículo en Inglés | MEDLINE | ID: mdl-17095234

RESUMEN

In this paper, to understand the roles of amorphous structures which were observed within the viromatrix of Rana grylio virus (RGV), an improved immunoelectron microscopy (IEM) method was developed to detect the localization of RGV in carp Epithelipma papulosum cyprinid (EPC) cells. Infected EPC cells were fixed with 4% paraformaldehyde-0.25% glutaraldehyde mixture, dehydrated completely, and embedded in LR White resin. This method allowed good ultrastructural preservation and specific labeling with anti-RGV antibodies. The results of IEM showed that colloidal gold mainly bound to the capsids of viral particles at the stage of viral assembly, while during the viral maturation colloidal gold bound to the envelop of virions. In addition, within the viromatrix, the amorphous structures, including dense floccules, membranous materials and tubules, also had strong colloidal gold signals, revealing that those amorphous structures were participated in RGV assembly. In contrast, no significant gold labeling signals were obtained in negative controls. The present study not only provided further evidence that amorphous structures within the viromatrix were involved in the process of RGV assembly, but also developed an improved IEM method for studying the interaction between iridovirus and host cells.


Asunto(s)
Carpas/virología , Células Epiteliales/virología , Microscopía Inmunoelectrónica/métodos , Ranavirus/aislamiento & purificación , Animales , Línea Celular , Células Cultivadas , Citoplasma/ultraestructura , Citoplasma/virología , Células Epiteliales/ultraestructura , Ranavirus/metabolismo , Ranavirus/patogenicidad , Coloración y Etiquetado/métodos , Fijación del Tejido/métodos , Virión/metabolismo , Virión/ultraestructura , Ensamble de Virus
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