RESUMO
BACKGROUND: Peste des Petits Ruminants (PPR) is a severe contagious viral disease, which mainly affects small ruminants. PPR is caused by a Morbillivirus that belongs to the family Paramyxoviridae. In this study 12 suspected PPR outbreaks among sheep and goats were investigated in four localities in Kassala State, Eastern Sudan, during 2015-2017. The causative agent was confirmed by a Sandwich Enzyme-Linked Immunosorbent Assay (sELISA), and a Reverse Transcription Polymerase Chain Reaction (RT-PCR) targeting a partial sequence of nucleocapsid protein gene (N- gene) and a partial sequence of fusion protein gene (F- gene). Sequencing and phylogenetic analysis were carried out on six N- gene based RT-PCR products selected from two outbreaks occurred on border and inner localities of Kassala State to determine the circulating lineages of PPRV strains. Identity percentages were determined between isolates in this study and previous Sudanese, and other (African and Asian) isolates which clustered along with them. RESULTS: Out of 30 samples, 22 (73.3%) were positive using sandwich ELISA. From 22 s ELISA positive samples, 17 (77.3%) were positive by Ngene based RT-PCR and only 7(43.8%) out of 16 positive samples by N gene based RT-PCR were positive using Fgene based RT-PCR. The sequencing and phylogenetic analysis confirmed involvement of the lineage IV of PPRV in outbreaks among small ruminants in Kassala State and high identity percentage between our isolates and previous Sudanese and other (African and Asian) isolates. CONCLUSIONS: The present study demonstrates that genetic relationship between PPRV strains circulating in sheep in Kassala State, Eastern Sudan, and PPRV strains characterized as lineage IV in neighboring African countries such as Eretria,Ethiopia, Egypt, and other Asian countries.
RESUMO
BACKGROUND: After a long period of neglect, initiatives are being implemented in Sudan to control tsetse and trypanosomosis. Their planning, execution and monitoring require reliable information on the geographic distribution of the disease and its vectors. However, geo-referenced and harmonized data at the national level are lacking, despite the fact that a number of epidemiological studies were conducted over the years. The Atlas of tsetse and bovine trypanosomosis in Sudan tries to fill this gap. METHODS: The present study includes both a review of historical datasets on tsetse flies and bovine trypanosomosis, as well as the results of recent, targeted field investigations. The review includes both published and unpublished datasets collected in Sudan from 1960 onwards. Targeted field investigations were conducted for trypanosomosis in Blue Nile (2011) and Gezeira States (2012), for tsetse flies in South Darfur (2012) and Blue Nile States (2009 and 2011), and for other trypanosomosis vectors in seven States (Khartoum, Gezeira, White Nile, Blue Nile, North Kordofan, Kassala and Gadarif). The latter surveys, conducted from 2010 to 2012, also enabled us to confirm the absence of tsetse flies in a number of locations. RESULTS: Tsetse fly infestation in Sudan appears to be limited to two relatively small areas at the south-western and south-eastern tips of the Country (South Darfur and Blue Nile State respectively). Glossina morsitans submorsitans is present in both areas, whilst G. fuscipes fuscipes is found only in the latter. In contrast, bovine trypanosomosis is widespread, its presence having being confirmed in eleven States and suspected in all the others. Both mechanical transmission by non-cyclical vectors and animal movement contribute to this broad distribution of trypanosomosis. This is especially the case for Trypanosoma vivax, which was found even in sedentary cattle at hundreds of kilometres of the tsetse belt. CONCLUSIONS: The Atlas provides a spatially-explicit synthesis of the current knowledge of tsetse and bovine trypanosomosis in Sudan. Its various epidemiological outputs are being used to target both trypanosomosis control activities and further data collection exercises. Activities are ongoing to expand the Atlas to non-cyclical vectors and hosts other than cattle.
