UVSSA, UBP12, and RDO2/TFIIS Contribute to Arabidopsis UV Tolerance.

Plant DNA is damaged by exposure to solar radiation, which includes ultraviolet (UV) rays. UV damaged DNA is repaired either by photolyases, using visible light energy, or by nucleotide excision repair (NER), also known as dark repair. NER consists of two subpathways: global genomic repair (GGR), which repairs untranscribed DNA throughout the genome, and transcription-coupled repair (TCR), which repairs transcribed DNA. In mammals, CSA, CSB, UVSSA, USP7, and TFIIS have been implicated in TCR. Arabidopsis homologs of CSA (AtCSA-1/2) and CSB (CHR8) have previously been shown to contribute to UV tolerance. Here we examine the role of Arabidopsis homologs of UVSSA, USP7 (UBP12/13), and TFIIS (RDO2) in UV tolerance. We find that loss of function alleles of UVSSA, UBP12, and RDO2 exhibit increased UV sensitivity in both seedlings and adults. UV sensitivity in atcsa-1, uvssa, and ubp12 mutants is specific to dark conditions, consistent with a role in NER. Interestingly, chr8 mutants exhibit UV sensitivity in both light and dark conditions, suggesting that the Arabidopsis CSB homolog may play a role in both NER and light repair. Overall our results indicate a conserved role for UVSSA, USP7 (UBP12), and TFIIS (RDO2) in TCR.

Reservoir water quality: a case from Jordan.

Jordan relies heavily on reservoirs building and development to cope with water supply challenges, where monitoring and assessment of reservoir water quality are critically important for the sustainable use of these water supplies. Mujib Dam is an important water supply source in central western Jordan. Evaluation of water quality parameters and their spatial distributions (vertical and horizontal) showed near-neutral pH values with nearly similar values from surface to bottom. The vertical profile of DO and TDS in the dammed reservoir showed slight decreasing trends with increasing depth. Although Ca, Mg, Na, and K concentrations varied slightly with depths, their variations showed no trends. Similarly, the vertical and horizontal distribution patterns of Cl, SO4, HCO3, NO3, and PO4 in Mujib reservoir water showed insignificant variations in surface water layer and relatively unchanged values or decreasing trends through the water column. Higher values of TN have been observed, especially in the western part, suggesting that agricultural activities and livestock farming in the upstream catchment are impacting water quality. Results revealed that weathering and dissolution of rocks are the major source of water chemistry. The majority of trace metal levels (Cd, Cr, Cu, Fe, Mn, Pb, Zn, Co, Ni, Sr, and B) in water showed relatively similar surface and bottom values. The concentrations of COD and BOD5 in surface water were relatively low with higher concentrations observed in the northwestern corner, coincided with higher levels of chlorophyll a. The average ratio of TN to TP in surface water suggests that phosphorus is the limiting factor for the algal blooms, whereas the average chlorophyll a level in surface water indicates oligo-mesotrophic water.

Characteristics and quality of reservoir sediments, Mujib Dam, Central Jordan, as a case study.

This paper focuses on characterizing the current status of physiochemical properties of Mujib Dam sediments. Five types of granulometric textural facies were observed for the bottom sediments of Mujib reservoir bed; these are clayey facies, clayey-silt facies, sand-silt-clay facies, sand facies, and granule facies. This average grain size will likely play a vital role in adsorption-desorption of the majority trace metals to the reservoir lake. Other sediment parameters including the total averages were 5.9% (total organic matter (TOM)), 7.5 (pH), 25.8% (CaCO3), and 88.0 meq/100 g (cation exchange capacity), with dominant mineralogical constituents of quartz, calcite, dolomite, and minor feldspar and with variability in clay mineral types. The vast majority of trace metals in sediment exhibited values in the range or near the upper limit of the normal worldwide soil ranges. TOM and grain size of sediment are major factors governing the trace metal concentrations. The calculated geoaccumulation index (I geo) and enrichment factor (EF) of metals in sediments of Mujib Dam were ranked as follows: cadmium (Cd) > copper (Cu) > zinc (Zn) > lead (Pb) > cobalt (Co) > iron (Fe) > chromium (Cr) > nickel (Ni) > manganese (Mn) > Sr based on the I geo and Cd > Zn > Pb > Co > Cr > Cu > Sr > Ni > Mn according to the EF values. The estimated percentage loss in volumetric capacity of the reservoir due to sedimentation was 1.55% per year, indicating that the sediment currently occupied 18.63% of the original reservoir storage capacity. The maximum life span of reservoir is about 64.46 years.

Overexpression of Arabidopsis damaged DNA binding protein 1A (DDB1A) enhances UV tolerance.

Damaged DNA Binding protein 1 (DDB1) is a conserved protein and a component of multiple cellular complexes. Arabidopsis has two homologues of DDB1: DDB1A and DDB1B. In this study we examine the role of DDB1A in Arabidopsis UV tolerance and DNA repair using a DDB1A null mutant (ddb1a) and overexpression lines. DDB1A overexpression lines showed higher levels of UV-resistance than wild-type in a range of assays as well as faster DNA repair. However a significant difference between wild-type plants and ddb1a mutants was only observed immediately following UV treatment in root length and photoproduct repair assays. DDB1A and DDB1B mRNA levels increased 3 h after UV exposure and DDB1A is required for UV regulation of DDB1B and DDB2 mRNA levels. In conclusion, while DDB1A is sufficient to increase Arabidopsis UV tolerance, it is only necessary for immediate response to UV damage.

DDB2, DDB1A and DET1 exhibit complex interactions during Arabidopsis development.

Damaged DNA-binding proteins 1 and 2 (DDB1 and DDB2) are subunits of the damaged DNA-binding protein complex (DDB). DDB1 is also found in the same complex as DE-ETIOLATED 1 (DET1), a negative regulator of light-mediated responses in plants. Arabidopsis has two DDB1 homologs, DDB1A and DDB1B. ddb1a single mutants have no visible phenotype while ddb1b mutants are lethal. We have identified a partial loss-of-function allele of DDB2. To understand the genetic interaction among DDB2, DDB1A, and DET1 during Arabidopsis light signaling, we generated single, double, and triple mutants. det1 ddb2 partially enhances the short hypocotyl and suppresses the high anthocyanin content of dark-grown det1 and suppresses the low chlorophyll content, early flowering time (days), and small rosette diameter of light-grown det1. No significant differences were observed between det1 ddb1a and det1 ddb1a ddb2 in rosette diameter, dark hypocotyl length, and anthocyanin content, suggesting that these are DDB1A-dependent phenotypes. In contrast, det1 ddb1a ddb2 showed higher chlorophyll content and later flowering time than det1 ddb1a, indicating that these are DDB1A-independent phenotypes. We propose that the DDB1A-dependent phenotypes indicate a competition between DDB2- and DET1-containing complexes for available DDB1A, while, for DDB1A-independent phenotypes, DDB1B is able to fulfill this role.