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1.
Environ Microbiol ; 17(8): 3025-38, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25970820

RESUMO

Although plants introduced for site restoration are pre-selected for specific traits (e.g. trace element bioaccumulation, rapid growth in poor soils), the in situ success of these plants likely depends on the recruitment of appropriate rhizosphere microorganisms from their new environment. We introduced three willow (Salix spp.) cultivars to a contaminated landfill, and performed soil chemical analyses, plant measurements, and Ion Torrent sequencing of rhizospheric fungal and bacterial communities at 4 and 16 months post-planting. The abundance of certain dominant fungi was linked to willow accumulation of Zn, the most abundant trace element at the site. Interestingly, total Zn accumulation was better explained by fungal community structure 4 months post-planting than 16 months post-planting, suggesting that initial microbial recruitment may be critical. In addition, when the putative ectomycorrhizal fungi Sphaerosporella brunnea and Inocybe sp. dominated the rhizosphere 4 months post-planting, Zn accumulation efficiency was negatively correlated with fungal diversity. Although field studies such as this rely on correlation, these results suggest that the soil microbiome may have the greatest impact on plant function during the early stages of growth, and that plant-fungus specificity may be essential.


Assuntos
Microbiota , Micorrizas/crescimento & desenvolvimento , Rizosfera , Salix/crescimento & desenvolvimento , Microbiologia do Solo , Poluentes do Solo/metabolismo , Instalações de Eliminação de Resíduos , Zinco/metabolismo , Ascomicetos/classificação , Ascomicetos/genética , Bactérias/classificação , Bactérias/genética , Sequência de Bases , DNA Bacteriano/genética , DNA Fúngico/genética , Recuperação e Remediação Ambiental/métodos , Raízes de Plantas/microbiologia , RNA Ribossômico 16S/genética , Salix/metabolismo , Análise de Sequência de DNA , Solo/química , Oligoelementos/metabolismo
2.
ISME J ; 8(2): 331-43, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23985744

RESUMO

Phytoremediation is an attractive alternative to excavating and chemically treating contaminated soils. Certain plants can directly bioremediate by sequestering and/or transforming pollutants, but plants may also enhance bioremediation by promoting contaminant-degrading microorganisms in soils. In this study, we used high-throughput sequencing of bacterial 16S rRNA genes and the fungal internal transcribed spacer (ITS) region to compare the community composition of 66 soil samples from the rhizosphere of planted willows (Salix spp.) and six unplanted control samples at the site of a former petrochemical plant. The Bray-Curtis distance between bacterial communities across willow cultivars was significantly correlated with the distance between fungal communities in uncontaminated and moderately contaminated soils but not in highly contaminated (HC) soils (>2000 mg kg(-1) hydrocarbons). The mean dissimilarity between fungal, but not bacterial, communities from the rhizosphere of different cultivars increased substantially in the HC blocks. This divergence was partly related to high fungal sensitivity to hydrocarbon contaminants, as demonstrated by reduced Shannon diversity, but also to a stronger influence of willows on fungal communities. Abundance of the fungal class Pezizomycetes in HC soils was directly related to willow phylogeny, with Pezizomycetes dominating the rhizosphere of a monophyletic cluster of cultivars, while remaining in low relative abundance in other soils. This has implications for plant selection in phytoremediation, as fungal associations may affect the health of introduced plants and the success of co-inoculated microbial strains. An integrated understanding of the relationships between fungi, bacteria and plants will enable the design of treatments that specifically promote effective bioremediating communities.


Assuntos
Bactérias/metabolismo , Fungos/fisiologia , Hidrocarbonetos/metabolismo , Filogenia , Rizosfera , Salix , Microbiologia do Solo , Bactérias/classificação , Bactérias/genética , Biodegradação Ambiental , DNA Espaçador Ribossômico/genética , Fungos/classificação , Fungos/genética , Fungos/metabolismo , RNA Ribossômico 16S/genética , Salix/classificação , Salix/microbiologia , Solo/química , Poluentes do Solo/química , Poluentes do Solo/metabolismo
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