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1.
Front Chem ; 12: 1407355, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38873406

RESUMO

Aminomethanol is released into the atmosphere through various sources, including biomass burning. In this study, we have expounded the chemical kinetics of aminomethanol in the reaction pathways initiated by the hydroxyl radical ( O ˙ H) with the aid of ab initio//density functional theory (DFT) i.e., coupled-cluster theory (CCSD(T))//hybrid-DFT (M06-2X/6-311++G (3df, 3pd). We have explored various possible directions of the O ˙ H radical on aminomethanol, as well as the formation of distinct pre-reactive complexes. Our computational findings reveal that the H transfer necessitates activation energies ranging from 4.1 to 6.5 kcal/mol from the -CH2 group, 3.5-6.5 kcal/mol from the -NH2 group and 7-9.3 kcal/mol from the -OH group of three rotational conformers. The H transfer from -CH2, -NH2 and -OH exhibits an estimated total rate constant (k OH) of approximately 1.97 × 10-11 cm3 molecule-1 s-1 at 300 K. The branching fraction analysis indicates a pronounced dominance of C-centered NH2 C ˙ HOH radicals with a favorability of 77%, surpassing the N-centered N ˙ HCH2OH (20%) and O-centered NH2CH2 O ˙ (3%) radicals. Moreover, our investigation delves into the oxidation of the prominently favored carbon-centered NH2 C ˙ HOH radical through its interaction with atmospheric oxygen molecules. Intriguingly, our findings reveal that formamide (NH2CHO) emerges as the predominant product in the NH2 C ˙ HOH + 3O2 reaction, eclipsing alternative outcomes such as amino formic acid (NH2COOH) and formimidic acid (HN = C(H)-OH). At atmospheric conditions pertinent to the troposphere, the branching fraction value for the formation of formamide is about 99%, coupled with a rate constant of 5.5 × 10-12 cm3 molecule-1 s-1. Finally, we have scrutinized the detrimental impact of formamide on the atmosphere. Interaction of formamide with atmospheric hydroxyl radicals could give rise to the production of potentially perilous compounds such as HNCO. Further, unreacted N ˙ HCH2OH radicals may initiate the formation of carcinogenic nitrosamines when reacting with trace N-oxides (namely, NO and NO2). This, in turn, escalates the environmental risk factors.

2.
J Org Chem ; 89(6): 3781-3799, 2024 03 15.
Artigo em Inglês | MEDLINE | ID: mdl-38408196

RESUMO

An efficient synthesis of 3-amino-2-formyl-functionalized benzothiophenes by a domino reaction protocol and their use to synthesize a library of novel scaffolds have been reported. Reactions of ketones and 1,3-diones with these amino aldehyde derivatives formed a series of benzothieno[3,2-b]pyridine and 3,4-dihydro-2H-benzothiopheno[3,2-b]quinolin-1-one, respectively. A plausible mechanism for the formation of fused pyridine derivatives by the Friedlander reaction has been elucidated by density functional theory (DFT) calculations. Furthermore, hydrazones were obtained by reacting the aldehyde functional group of benzothiophenes with different hydrazine derivatives. Preliminary screening of these compounds against several bacterial strains and cancer cell lines led to the discovery of several hit molecules. Hydrazone and benzothieno[3,2-b]pyridine derivatives are potent cytotoxic and antibacterial agents, respectively. One of the potent compounds effected ∼97% growth inhibition of the LOX IMVI cell line at 10 µM concentration.


Assuntos
Antibacterianos , Antineoplásicos , Antibacterianos/química , Tiofenos/farmacologia , Tiofenos/química , Linhagem Celular , Antineoplásicos/química , Piridinas/química , Relação Estrutura-Atividade
3.
Front Chem ; 11: 1243235, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37810581

RESUMO

The aminomethyl (•CH2NH2) radical is generated from the photo-oxidation of methylamine in the troposphere and is an important precursor for new particle formation. The effect of ammonia and water on the gas-phase formation of methanimine (CH2NH) from the •CH2NH2 + O2 reaction is not known. Therefore, in this study, the potential energy surfaces for •CH2NH2 + O2 (+NH3/H2O) were constructed using ab initio//DFT, i.e., coupled-cluster theory (CCSD(T))//hybrid-density functional theory, i.e., M06-2X with the 6-311++G (3df, 3pd) basis set. The Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) simulation with Eckart's asymmetric tunneling was used to calculate the rate coefficients and branching fractions relevant to the troposphere. The results show 40% formation of CH2NH at the low-pressure (<1 bar) and 100% formation of CH2NH2OO• at the high-pressure limit (HPL) condition. When an ammonia molecule is introduced into the reaction, there is a slight increase in the formation of CH2NH; however, when a water molecule is introduced into the reaction, the increase in the formation of CH2NH was from 40% to ∼80%. The calculated rate coefficient for •CH2NH2 + O2 (+NH3) [1.9 × 10-23 cm3 molecule-1 s-1] and for CH2NH2 + O2 (+H2O) [3.3 × 10-17 cm3 molecule-1 s-1] is at least twelve and six order magnitudes smaller than those for free •CH2NH2 + O2 (2 × 10-11 cm3 molecule-1 s-1 at 298 K) reactions, respectively. Our result is consistent with that of previous experimental and theoretical analysis and in good agreement with its isoelectronic analogous reaction. The work also provides a clear understanding of the formation of tropospheric carcinogenic compounds, i.e., hydrogen cyanide (HCN).

4.
Chemphyschem ; 24(21): e202300266, 2023 Nov 02.
Artigo em Inglês | MEDLINE | ID: mdl-37609863

RESUMO

In the present study, a novel and unconventional two-dimensional (2D) material with Dirac electronic features has been designed using sulflower with the help of density functional theory methods and first principles calculations. This 2D material comprises of hetero atoms (C, S) and belongs to the tetragonal lattice with P4 /nmm space group. Scrutiny of the results show that the 2D nanosheet exhibits a nanoporous wave-like geometrical structure. Quantum molecular dynamics simulations and phonon mode analysis emphasize the dynamical and thermal stability. The novel 2D nanosheet is an auxetic material with an anisotropy in the in-plane mechanical properties. Both composition and geometrical features are completely different from the conditions necessary for the formation of Dirac cones in graphene. However, the presence of semi-metallic nature, linear band dispersion relation, massive fermions and massless Dirac fermions are observed in the novel 2D nanosheet. The massless Dirac fermions exhibit highly isotropic Fermi velocities (vf =0.68×106  m/s) along all crystallographic directions. The zero-band gap semi metallic features of the novel 2D nanosheet are perturbative to the electric field and external strain.

5.
Nanomaterials (Basel) ; 13(9)2023 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-37177105

RESUMO

Electron transport materials (ETMs) play a vital role in electron extraction and transport at the perovskite/ETM interface of inverted perovskite solar cells (PSCs) and are useful in power conversion efficiency (PCE), which is limited by interface carrier recombination. However, strategies for passivating undercoordinated Pb2+ at the perovskite/ETM interface employing ETMs remain a challenge. In this work, a variety of heteroatoms were used to strengthen the Lewis base property of new ETMs (asymmetrical perylene-diimide), aimed at deactivating non-bonded Pb2+ at the perovskite surface through Lewis acid-base coordination. Quantum chemical analysis revealed that novel ETMs have matched the energy level of perovskite, which enables electron extraction at the perovskite/ETM interface. The results also suggest that the large electron mobility (0.57~5.94 cm2 V-1 s-1) of designed ETMs shows excellent electron transporting ability. More importantly, reinforced interaction between new ETMs and Pb2+ was found, which is facilitating to passivation of the defects induced by unsaturated Pb2+ at the perovskite/ETM interface. Furthermore, it is found that MA (CH3NH3+), Pb, and IPb (iodine substituted on the Pb site) defects at the perovskite/ETM interface could be effectively deactivated by the new ETMs. This study provides a useful strategy to design ETMs for improving the interface property in PSCs.

6.
Phys Chem Chem Phys ; 25(14): 9965-9978, 2023 Apr 05.
Artigo em Inglês | MEDLINE | ID: mdl-36960665

RESUMO

Formic acid (HCOOH) is one of the highly abundant acids in the troposphere. It is important in the formation of atmospheric aerosols and impacts the acidity of rainwater. In the present scenario, the model chemistry of HCOOH(FA) sources and sinks is poorly understood. In this work, we apply quantum chemical methods coupled with advanced statistical rate theories to understand the production of FA and its catalytic behavior under tropospheric conditions. The potential energy surfaces (PES) for O2 + OH˙CHOH and O2 + OH˙CHOH(+FA) reactions were constructed using the CCSD(T)/6-311++G(3df,3pd)//M06-2X/6-311++G(3df,3pd) level and rate constants for the production of FA were predicted using Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) simulation with Eckart tunnelling and canonical variational transition state theory (CVT) with small curvature tunnelling (SCT) between the temperature range of 200-320 K and pressure range of 0.001 to 10 bar. The reaction follows the formation of cis and trans intermediates followed by spontaneous decomposition via concerted HO2 elimination to form stable post intermediates, which then leads to the straight formation of cis and trans formic acid. The current study also helps understand the role of cis and trans contribution to the total rate constants. The results show that O2 + OH˙CHOH is dominated by both cis and trans isomers; however, the trans isomer plays a more important role in the catalytic reaction. This result is due to the formation of a strong hydrogen-bonded complex in the trans isomer, which is dominated by the enthalpy factor rather than the entropy factor. The results predict that the catalytic effect of FA on the O2 + OH˙CHOH reaction is important when the concentration of FA is not included in the calculations; however, it has no effect under tropospheric conditions, when the FA concentration is included in the calculation. As a result, the total effective reaction rate constants are smaller. This work provides experimental/theoretical confirmation of Franco et al. who predicted that methanediol is the precursor for the FA formation, resolving an open problem in the kinetics of the gas phase reaction. O2 + OH˙CHOH and O2 + OH˙CHOH(+FA) probably explain other diol systems, which can help explain the formation of other atmospheric acids that affect aerosol formation and cloud evolution.

7.
Sci Rep ; 11(1): 12185, 2021 Jun 09.
Artigo em Inglês | MEDLINE | ID: mdl-34108500

RESUMO

The rate coefficients for OH + CH3OH and OH + CH3OH (+ X) (X = NH3, H2O) reactions were calculated using microcanonical, and canonical variational transition state theory (CVT) between 200 and 400 K based on potential energy surface constructed using CCSD(T)//M06-2X/6-311++G(3df,3pd). The results show that OH + CH3OH is dominated by the hydrogen atoms abstraction from CH3 position in both free and ammonia/water catalyzed ones. This result is in consistent with previous experimental and theoretical studies. The calculated rate coefficient for the OH + CH3OH (8.8 × 10-13 cm3 molecule-1 s-1), for OH + CH3OH (+ NH3) [1.9 × 10-21 cm3 molecule-1 s-1] and for OH + CH3OH (+ H2O) [8.1 × 10-16 cm3 molecule-1 s-1] at 300 K. The rate coefficient is at least 8 order magnitude [for OH + CH3OH(+ NH3) reaction] and 3 orders magnitude [OH + CH3OH (+ H2O)] are smaller than free OH + CH3OH reaction. Our calculations predict that the catalytic effect of single ammonia and water molecule on OH + CH3OH reaction has no effect under tropospheric conditions because the dominated ammonia and water-assisted reaction depends on ammonia and water concentration, respectively. As a result, the total effective reaction rate coefficients are smaller. The current study provides a comprehensive example of how basic and neutral catalysts effect the most important atmospheric prototype alcohol reactions.

8.
New J Chem ; 45(13): 6001-6017, 2021 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-33840994

RESUMO

In an effort to synthesize a library of bioactive molecules, we present an efficient synthesis of fused-thiazole derivatives of natural products and approved drugs by using an environmentally usable solvent, acetic acid, and without any external reagent. Cholestenone, ethisterone, progesterone, and nootkatone-derived epoxyketones have been utilized to synthesize 50 novel compounds. The plausible mechanism of the reaction has been determined by theoretical calculation using M06-2X/6-31+G(d,p). These novel molecules have been tested against cancer cell lines and pathogenic bacterial strains. Several ethisterone-based fused-thiazole compounds are found to be potent growth inhibitors of cancer cell lines at submicromolar concentrations.

9.
Phys Chem Chem Phys ; 23(10): 6225-6240, 2021 Mar 18.
Artigo em Inglês | MEDLINE | ID: mdl-33687383

RESUMO

Chemical kinetics of O2-addition to alkyl radicals (R), termed first O2-addition in the oxidation mechanism of alkanes, are of central importance to next-generation combustion strategies designed for operations in the low- to intermediate-temperature region (<1000 K). In the present work, stationary points on potential energy surfaces (PES), temperature- and pressure-dependent rate coefficients, and branching fractions of product formation from R + O2 reactions initiated by the addition of molecular oxygen (3O2) to the three alkyl radicals of a branched alkane, 2,5-dimethylhexane, are reported. The stationary points were determined utilizing ab initio/DFT methods and the reaction energies were computed using the composite CBS-QB3 method. Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) calculations were employed to compute rate coefficients, from which branching fractions were determined over the pressure range of 10-3-20 atm and the temperature range of 400-900 K on three different surfaces. The quantum chemistry results reveal several distinct features. For the addition of O2 to the tertiary alkyl radical 2,5-dimethylhex-2-yl, the most energetically favorable channel leads to the formation of 2,2,5,5,-tetramethyl-tetrahydrofuran, a cyclic ether intermediate formed coincident with OH in a chain-propagating step from the decomposition of tertiary-tertiary hydroperoxyalkyl (QOOH). On the R + O2 surface of the secondary radical, 2,5-dimethylhex-3-yl, the pathways for the formation of methyl-propanal + iso-butene + OH via concerted C-C and O-O bond scission of tertiary QOOH and that of cyclic ether + OH are the most energetically favorable pathways. The R + O2 surface for the reaction of the primary radical, 2,5-dimethylhex-1-yl, reveals two competitive chain-propagation channels, leading to 2-iso-propyl-4-methyl-tetrahydrofuran + OH and 2,2,5-trimethyltetrahydropyran + OH. Below 100 Torr, the formation of the aforementioned species dominates the respective total R + O2 rate coefficient, while at pressures above 1 atm collisionally stabilized alkylperoxy (ROO) dominates at the temperatures considered here. The results of this study are in very good agreement with the experimentally measured intermediates and products of the 2,5-dimethylhexyl radical + O2 reaction.

10.
Sci Rep ; 10(1): 10995, 2020 Jul 03.
Artigo em Inglês | MEDLINE | ID: mdl-32620911

RESUMO

In this work, we used quantum chemical methods and chemical kinetic models to answer the question of whether or not formaldehyde (CH2O) and ammonia (NH3) can be produced from gas phase hydration of methylenimine (CH2NH). The potential energy surfaces (PESs) of CH2NH + H2O → CH2O + NH3 and CH2NH + 2H2O → CH2O + NH3 + H2O reactions were computed using CCSD(T)/6-311++G(3d,3pd)//M06-2X/6-311++G(3d,3pd) level. The temperature-and pressure-dependent rate constants were calculated using variational transition state theory (VTST), microcanonical variational transition state theory [Formula: see text] and Rice-Ramsperger-Kassel-Marcus/master equation (RRKM/ME) simulations. The PES along the reaction path forming a weakly bound complex (CH2NH⋯H2O) was located using VTST and [Formula: see text]VTST, however, the PES along the tight transition state was characterized by VTST with small curvature tunneling (SCT) approach. The results show that the formation of CH2NH + H2O → CH2NH⋯H2O is pressure -and temperature-dependent. The calculated atmospheric lifetimes of CH2NH⋯H2O (~ 8 min) are too short to undergo secondary bimolecular reactions with other atmospheric species. Our results suggest that the formation of CH2O and NH3 likely to occur in the combustion of biomass burning but the rate of formation CH2O and NH3 is predicted to be negligible under atmospheric conditions. When a second water molecule is added to the reaction, the results suggest that the rates of formation of CH2O and NH3 remain negligible.

11.
ACS Omega ; 4(10): 14284-14293, 2019 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-31508552

RESUMO

Microbial resistance to antibiotics is an urgent and worldwide concern. Several pyrazole-derived hydrazones were synthesized by using benign reaction conditions. Several of these molecules are potent growth inhibitors of drug-resistant strains of Staphylococcus aureus and Acinetobacter baumannii with minimum inhibitory concentration values as low as 0.39 µg/mL. Furthermore, these molecules are nontoxic to human cells at high concentrations. Some of these molecules were tested for their ability to disrupt the bacterial membrane by using the SYTO-9/propidium iodide (BacLight) assay.

12.
Phys Chem Chem Phys ; 21(35): 19242-19251, 2019 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-31441484

RESUMO

The gas phase reaction between CH2O and NH3 is an important reaction in cold interstellar clouds, combustion chemistry and organic chemistry. In this study, the stationary point on the potential energy surfaces (PESs) for the CH2O + NH3 reaction was computed at the CCSD(T)/6-311++G(3df,3pd)//M06-2X/6-311++G(3df,3pd) level. The temperature- and pressure-dependent rate constants were computed using advanced kinetic models, including microcanonical variational transition state theory and Rice-Ramsperger-Kassel-Marcus (RRKM)/master equation (ME) techniques. Our result predicts that the CH2O + NH3 reaction forms a collisionally thermalized CH2ONH3 complex with respect to thermal unimolecular dissociation and the other products, i.e., NH2CH2OH and CH2NH + H2O, are negligible under atmospheric conditions. The calculated atmospheric lifetime of the CH2ONH3 complex is ∼17 min, which suggests that the CH2ONH3 complex can react with other atmospheric species. The results also suggest that the formation of CH2NH and H2O from the Strecker's process is negligibly small under all the conditions studied here. The decay rate of CH2O + NH3 (5.1 × 10-4 s-1 at 1500 K) suggests that aminomethanol (NH2CH2OH) is likely to occur in the high-temperature combustion of biomass burning, but the rate of formation of NH2CH2OH is negligible under atmospheric conditions. The predicted atmospheric lifetime (∼4 days) of NH2CH2OH in the presence of the OH radical suggests that further reactions with other atmospheric species are possible. The formation of the NH2CHOH radical from the reaction OH + NH2CH2OH can lead to carcinogenic products, such as nitrosamines, acetamide, hydrocycnic acid, NH2 and CO2.

13.
Org Lett ; 20(18): 5927-5932, 2018 09 21.
Artigo em Inglês | MEDLINE | ID: mdl-30204455

RESUMO

An unprecedented reaction of thiourea derivatives with 6ß-bromoandrostenedione has been discovered for the formation of aminothiazolo-androstenones via a simple, safer, cascade protocol that enables the syntheses of novel molecules by using readily available reagents. The reaction mechanism of product formation has been rationalized by density functional theory calculations. This benign methodology accentuates a domino protocol deploying a renewable solvent, ethanol, while generating novel compounds that display potent growth inhibitory effects in in vitro studies for several cancer cell lines at submicromolar concentrations.


Assuntos
Androstenos/farmacologia , Antineoplásicos/farmacologia , Neoplasias/tratamento farmacológico , Tiazóis/farmacologia , Androstenos/química , Antineoplásicos/síntese química , Antineoplásicos/química , Linhagem Celular Tumoral , Proliferação de Células/efeitos dos fármacos , Teoria da Densidade Funcional , Ensaios de Seleção de Medicamentos Antitumorais , Humanos , Neoplasias/patologia , Relação Estrutura-Atividade , Tiazóis/química
14.
ACS Omega ; 3(12): 17991-18001, 2018 Dec 31.
Artigo em Inglês | MEDLINE | ID: mdl-30613817

RESUMO

A cascade reaction of thioamides with 6ß-bromoandrostenedione in hexafluoroisopropanol formed substituted thiazolo-androstenones. This is a simple and mild protocol to synthesize novel molecules by using readily available reagents and substrates. Feasibility of the reaction has been rationalized by density functional theory calculations. Moreover, these compounds are potent growth inhibitors of colon, central nervous system, melanoma, ovarian, and renal cancer cell lines with 50% growth inhibition values as low as 1.04 µM.

15.
New J Chem ; 41(24): 14862-14870, 2017 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-29430169

RESUMO

Domino strategy has been used for the synthesis of 2H-pyrido[1,2-a]pyrimidin-2-ones. Four sequential reactions: aza-Michael addition, water elimination, intramolecular acyl substitution, and [1,3]-H shift were observed in this domino protocol. Hexafluoroisopropanol is used as a promotor and recyclable solvent in this cascade process. Availability of inexpensive 2-aminopyridines and wide variety of Michael acceptors such as commercially available acrylates and unactivated Baylis-Hillman adducts makes this methodology a huge reservoir of novel fused N-heterocycles as bioactive and potential therapeutic agents. The reaction mechanism has been proposed and rationalized by density functional theory calculation. Products are obtained up to 95% yield.

16.
J Phys Chem A ; 120(36): 7060-70, 2016 Sep 15.
Artigo em Inglês | MEDLINE | ID: mdl-27529639

RESUMO

The reaction of methanimine (CH2NH) with the hydroperoxy (HO2) radical has been investigated by using a combination of ab initio and density functional theory (CCSD(T)/CBSB7//B3LYP+Dispersion/CBSB7) and master equation calculations based on transition state theory (TST). Variational TST was used to compute both canonical (CVTST) and microcanonical (µVTST) rate constants for barrierless reactions. The title reaction starts with the reversible formation of a cyclic prereactive complex (PRC) that is bound by ∼11 kcal/mol and contains hydrogen bonds to both nitrogen and oxygen. The reaction path for the entrance channel was investigated by a series of constrained optimizations, which showed that the reaction is barrierless (i.e., no intrinsic energy barrier along the path). However, the variations in the potential energy, vibrational frequencies, and rotational constants reveal that the two hydrogen bonds are formed sequentially, producing two reaction flux bottlenecks (i.e., two transition states) along the reaction path, which were modeled using W. H. Miller's unified TST approach. The rate constant computed for the formation of the PRC is pressure-dependent and increases at lower temperatures. Under atmospheric conditions, the PRC dissociates rapidly and its lifetime is too short for it to undergo significant bimolecular reaction with other species. A small fraction isomerizes via a cyclic transition state and subsequent reactions lead to products normally expected from hydrogen abstraction reactions. The kinetics of the HO2 + CH2NH reaction system differs substantially from the analogous isoelectronic reaction systems involving C2H4 and CH2O, which have been the subjects of previous experimental and theoretical studies.

17.
Med Chem ; 11(3): 271-85, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25256243

RESUMO

Aberrant regulation of epigenetic pathways causes many diseases including aging, cancer, diabetes, viral pathogenesis, drug addiction etc. and it has been estimated that epigenetic aberrations are at least ten to forty times more frequent in cancers than genetic mutations. Present epigenetic modulators hold great promise for a variety of diseases, and important tools for biological applications but these molecules have many dose limiting toxicities and existing paradigms lack desired efficacy. Synthesis and biological studies of epigenetic modulators have been attractive targets for medicinal and synthetic organic chemists in recent years. This review article provides deep insight into the new and under explored epigenetic modulators. These molecules have the potential to be used as unique template with novel pharmacophores.


Assuntos
Descoberta de Drogas , Epigênese Genética/efeitos dos fármacos , Epigênese Genética/genética , Ensaios de Triagem em Larga Escala , Humanos , Estrutura Molecular , Neoplasias/tratamento farmacológico , Neoplasias/genética
18.
J Phys Chem A ; 118(6): 1067-76, 2014 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-24344976

RESUMO

Environmental and energy security concerns have motivated an increased focus on developing clean, efficient combustors, which increasingly relies on insight into the combustion chemistry of fuels. In particular, naphthenes (cycloalkanes and alkylcycloalkanes) are important chemical components of distillate fuels, such as diesel and jet fuels. As such, there is a growing interest in describing napthene reactivity with kinetic mechanisms. Use of these mechanisms in predictive combustion models aids in the development of combustors. This study focuses on the pyrolysis of n-butylcyclohexane (n-BCH), an important representative of naphthenes in jet fuels. Seven different unimolecular decomposition pathways of C-C bond fission were explored utilizing ab initio/DFT methods. Accurate reaction energies were computed using the high-level quantum composite G3B3 method. Variational transition state theory, Rice-Ramsperger-Kassel-Marcus/master equation simulations provided temperature- and pressure-dependent rate constants. Implementation of these pathways into an existing chemical kinetic mechanism improved the prediction of experimental OH radical and H2O speciation in shock tube oxidation. Simulations of this combustion showed a change in the expected decomposition chemistry of n-BCH, predicting increased production of cyclic alkyl radicals instead of straight-chain alkenes. The most prominent reaction pathway for the decomposition of n-BCH is n-BCH = C3H7 + C7H13. The results of this study provide insight into the combustion of n-BCH and will aid in the future development of naphthene kinetic mechanisms.

19.
J Org Chem ; 75(17): 5797-809, 2010 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-20695635

RESUMO

The thermochemical properties and ring strains in cyclic [n]metaphenyleneacetylenes ([n]CMPAs), butadiyne-bridged [4(n)]metacyclophynes (B-B[4(n)]MCs), and butadiyne-bridged [4(n)]paracyclophynes (B-B[4(n)]PCs) were studied using a homodesmotic reaction scheme coupled with density functional theory (B3LYP/6-31G*, mPW1PW91/6-31G*, and M06-2X/6-31+G**//B3LYP/6-31G*). Strain energies of [n]CMPAs and B-B[4(n)]MCs decrease first from very high values for small rings to become zero when n becomes 6, then increase with n, and finally decrease as n becomes larger than 8. In the case of B-B[4(n)]PCs, strain energies decrease with increasing n. Heats of formation of [n]CMPAs, B-B[4(n)]MCs, and B-B[4(n)]PCs increase steadily with increasing numbers of phenylacetylene and 1-(buta-1,3-diynyl)benzene to reach a near-constant value per unit monomer as n increases. The geometries and (vibrational and nuclear magnetic resonance) spectroscopic properties of [n]CMPAs, B-B[4(n)]MCs, and B-B[4(n)]PCs were also studied. Geometrical parameters, Raman frequencies, and (1)H NMR chemical shifts of [3]CMPA and [4]CMPA are found to be in good agreement with compounds for which there are experimentally available values at the B3LYP/6-31G* level of theory. In addition, electronic structure calculations were carried out for [n]CMPAs, B-B[4(n)]MCs, and B-B[4(n)]PCs. Ring diameters were also calculated for B-B[4(n)]PCs.


Assuntos
Alcinos/química , Derivados de Benzeno/química , Simulação por Computador , Termodinâmica , Alcinos/síntese química , Derivados de Benzeno/síntese química , Estrutura Molecular , Estereoisomerismo
20.
J Comput Chem ; 31(3): 500-9, 2010 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19530106

RESUMO

Rate coefficients for the reaction of the hydroxyl radical with CF(3)CH(2)CH(3) (HFC-263fb) were computed using ab initio methods, viz. MP2, G3MP2, and G3B3 theories between 200 and 400 K. Structures of the reactants in the ground state (GS) and transition state (TS) were optimized at MP2(FULL)/6-31G*, MP2(FULL)/6-311+ +G**, and B3LYP/6-31G* level of theories. Seven TSs were identified for the title reaction in the above theories. However, five out of seven TSs were found to be symmetrically distinct. The kinetic parameters due to these five different TSs are presented in this manuscript. Intrinsic reaction coordinate (IRC) calculations were performed to confirm the existence of transition states. The contributions of all the individual hydrogens in the substrate for the reaction are estimated and compared with the results obtained using Structure Additivity Relationships. The rate coefficients for the title reaction were computed to be k = (7.96 +/- 0.93) x 10(-13) exp [-(2245 +/- 30)/T] cm(3) molecule(-1) s(-1) at MP2, k = (9.50 +/- 0.93) x 10(-13) exp [-(1162 +/- 30)/T] cm(3) molecule(-1) s(-1) at G3MP2, and k = (7.01 +/- 0.88) x 10(-13) exp [-(753 +/- 35)/T] cm(3) molecule(-1) s(-1)at G3B3 theories. The theoretically computed rate coefficients are found to be in excellent agreement with the experimentally determined ones. The OH-driven atmospheric lifetimes of this compound are computed to be 132, 2.2, and 0.7 years at, MP2, G3MP2, and G3B3 level of theories, respectively.

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