Shining Light on Osteoarthritis: Spatially Offset Raman Spectroscopy as a Window into Cartilage Health.

Articular cartilage is a complex tissue, and early detection of osteoarthritis (OA) is crucial for effective treatment. However, current imaging modalities lack molecular specificity and primarily detect late-stage changes. In this study, we propose the use of spatially offset Raman spectroscopy (SORS) for noninvasive, depth-dependent, and molecular-specific diagnostics of articular cartilage. We demonstrate the potential of SORS to penetrate deep layers of cartilage, providing a comprehensive understanding of disease progression. Our SORS measurements were characterized and validated through mechanical and histological techniques, revealing strong correlations between spectroscopic measurements and both Young's modulus and depth of cartilage damage. By longitudinally monitoring enzymatically degraded condyles, we further developed a depth-dependent damage-tracking method. Our analysis revealed distinct components related to sample depth and glycosaminoglycan (GAG) changes, offering a comprehensive picture of cartilage health. Collectively, these findings highlight the potential of SORS as a valuable tool for enhancing OA management and improving patient outcomes.

Suppression of thermo-acoustic instabilities in horizontal Rijke tube using pulsating radial jets.

Thermo-acoustic instability has been observed in gas turbines, rocket engines, and aero-engines. Acoustic perturbations grow and change the characteristics of the flow due to instability. The present work describes the use of pulsating air jets to suppress the thermo-acoustic instabilities. In present study pulsatile micro-jets are placed downstream of the burner radially which breaks the coupling between acoustic waves and unsteady heat release. A microphone connected to LIFA (LabVIEW Interface for Arduino) was used to detect the sound pressure levels. By controlling the airflow rate of the pulsatile jets, the sound pressure levels were suppressed down to the background noise level using minimum energy and time. A closed-loop control system is developed for this purpose, which works on the feedback signal acquired from microphone. To simulate the one dimensional combustion phenomenon, an experimental setup called Rijke tube was used. The suppression was most effective for the pulsatile jets of 27-33 Hz pulsation frequency range and at a flow rate of 6.8 LPM. This control strategy effectively controlled the combustion instability of around 35-42 dB.•The closed loop control method is built on DAQ and Arduino using the LabVIEW interface for Arduino (LIFA).•Developed closed loop active control method was observed to be effective for suppression of thermo-acoustic instability.•Optimum position of the radial planes of micro-jets with respect to the burner was decided to improve the efficacy of the pulsatile jets towards suppression of thermo-acoustic instability.

Shining Light on Osteoarthritis: Spatially Offset Raman Spectroscopy as a Window into Cartilage Health.

Articular cartilage is a complex tissue, and early detection of osteoarthritis (OA) is crucial for effective treatment. However, current imaging modalities lack molecular specificity and primarily detect late-stage changes. In this study, we propose the use of Spatially Offset Raman Spectroscopy (SORS) for non-invasive, depth-dependent, and molecular-specific diagnostics of articular cartilage. We demonstrate the potential of SORS to penetrate deep layers of cartilage, providing a comprehensive understanding of disease progression. Our SORS measurements were characterized and validated through mechanical and histological techniques, revealing strong correlations between spectroscopic measurements and both Young's modulus and depth of cartilage damage. By longitudinally monitoring enzymatically degraded condyles, we further developed a depth-dependent damage-tracking method. Our analysis revealed distinct components related to sample depth and glycosaminoglycan (GAG) changes, offering a comprehensive picture of cartilage health. Collectively, these findings highlight the potential of SORS as a valuable tool for enhancing OA management and improving patient outcomes.

An introductory bioinformatics exercise to reinforce gene structure and expression and analyze the relationship between gene and protein sequences.

We have developed an introductory bioinformatics exercise for sophomore biology and biochemistry students that reinforces the understanding of the structure of a gene and the principles and events involved in its expression. In addition, the activity illustrates the severe effect mutations in a gene sequence can have on the protein product. Students search GenBank for the wild-type nucleotide sequence of the Caenorhabditis elegans unc-22 gene, the amino acid sequence of its gene product, and the nucleotide sequence of the transposon Tc5. The nucleotide sequences are manipulated using two programs in the Lasergene® software package from DNASTAR®. The first program, EditSeq®, enables students to experience the meticulous process required to precisely locate and remove intron sequences from the wild-type unc-22 allele to generate a cDNA sequence. The unc-22(r466) allele is generated by inserting the sequence of the transposon Tc5 into the appropriate location of the third exon in unc-22. The open reading frames of both cDNAs are located and then translated. MegAlign®, the second program, aligns the wild-type sequence of the UNC-22 protein and the wild-type and mutant protein sequences that were constructed. The degree of sequence similarity between the aligned proteins allows students to verify their success in processing the gene, as well as to visualize the truncated protein product from the Tc5 mutant allele. Student feedback and possible modifications to the exercise as well as supplemental exercises are also discussed.