Temperature variation in caves and its significance for subterranean ecosystems.

Climate change affects all ecosystems, but subterranean ecosystems are repeatedly neglected from political and public agendas. Cave habitats are home to unknown and endangered species, with low trait variability and intrinsic vulnerability to recover from human-induced disturbances. We studied the annual variability and cyclicity of temperatures in caves vis-à-vis surface in different climatic areas. We hypothesize that cave temperatures follow the average temperature pattern at the surface for each location with a slight delay in the signal, but we found three different thermal patterns occurring in caves: (1) high positive correlation and a similar thermal pattern to the surface, (2) low correlation and a slight thermal delay of the signal from the surface, and (3) high negative correlation with an extreme delay from the surface. We found daily thermal cycles in some caves, which may potentially control the circadian rhythms of cave organisms. Our results show that caves had lower thermal amplitude than the surface, and that thermal averages within caves approximately correspond to the to the annual average of surface temperature. Caves buffer external temperature and act as refugia for biota in extreme climatic events. Likewise, temperature increases at surface will lead to increment in caves, threatening subterranean biota and ecosystem services.

The genus Inversotyphlus Strasser, 1962, stat. nov. and Inversotyphlusammirandus sp. nov., a new bizarre, highly modified troglobiotic millipede (Diplopoda, Julida, Julidae) from Albania, Balkan Peninsula.

Inversotyphlus Strasser, 1962, stat. nov. is raised to the genus level and a new hydrophilous species, Inversotyphlusammirandussp. nov., is described from the second deepest pit in Albania. This species is characterized by a highly modified head and body for a presumably semiaquatic or hygropetric life and filtering diet. It is by far the most bizarrely modified cave-dwelling julid known. The new species is diagnosed, described in detail, and richly illustrated. Besides I.ammirandussp. nov., the genus Inversotyphlusstat. nov. includes six species: I.clavatus (Antic, 2018), comb. nov., I.edentulus (Attems, 1951), comb. nov., I.gellianae (Makarov & Rada, 2006), comb. nov., I.gracilis (Antic, 2018), comb. nov., I.lobifer (Attems, 1951), comb. nov., and I.opisthonodus (Antic, 2018) comb. nov. The subgenus Attemsotyphlussyn. nov. is here considered as a junior subjective synonym of the genus Inversotyphlusstat. nov. Notes are given on the habitat of I.ammirandussp. nov., the taxonomy of the tribe Typhloiulini and the genus Inversotyphlusstat. nov., and adaptive modifications of the mouthparts.

Drivers of species knowledge across the tree of life.

Knowledge of biodiversity is unevenly distributed across the Tree of Life. In the long run, such disparity in awareness unbalances our understanding of life on Earth, influencing policy decisions and the allocation of research and conservation funding. We investigated how humans accumulate knowledge of biodiversity by searching for consistent relationships between scientific (number of publications) and societal (number of views in Wikipedia) interest, and species-level morphological, ecological, and sociocultural factors. Across a random selection of 3019 species spanning 29 Phyla/Divisions, we show that sociocultural factors are the most important correlates of scientific and societal interest in biodiversity, including the fact that a species is useful or harmful to humans, has a common name, and is listed in the International Union for Conservation of Nature Red List. Furthermore, large-bodied, broadly distributed, and taxonomically unique species receive more scientific and societal attention, whereas colorfulness and phylogenetic proximity to humans correlate exclusively with societal attention. These results highlight a favoritism toward limited branches of the Tree of Life, and that scientific and societal priorities in biodiversity research broadly align. This suggests that we may be missing out on key species in our research and conservation agenda simply because they are not on our cultural radar.

Karadenizia, a new monospecific pachyiuline genus (Diplopoda: Julida: Julidae) from Turkey.

The present paper is dedicated to the description of the monospecific pachyiuline genus Karadenizia gen. nov. with the type species K. merti sp. nov. from Erçek Cave near the southern coast of the Black Sea in Turkey. In addition to the diagnosis and detailed description, brief notes on the locality and known ecology of this taxon are given. The relationship of this genus with some other pachyiulines is discussed based on the structure of the gonopods and some somatic features. The interesting colouration of the new taxon allows a brief discussion and hypothesis on the possible defensive role of such a colour pattern, which is also known in some other millipedes.

Systematic Review and Meta-Analysis of the Efficacy of Interventions Applied during Primary Processing to Reduce Microbial Contamination on Pig Carcasses.

Interventions from lairage to the chilling stage of the pig slaughter process are important to reduce microbial contamination of carcasses. The aim of this systematic review and meta-analysis was to assess the effectiveness of abattoir interventions in reducing aerobic colony count (ACC), Enterobacteriaceae, generic Escherichia coli, and Yersinia spp. on pig carcasses. The database searches spanned a 30 year period from 1990 to 2021. Following a structured, predefined protocol, 22 articles, which were judged as having a low risk of bias, were used for detailed data extraction and meta-analysis. The meta-analysis included data on lairage interventions for live pigs, standard processing procedures for pig carcasses, prechilling interventions, multiple carcass interventions, and carcass chilling. Risk ratios (RRs) for prevalence studies and mean log differences (MDs) for concentration outcomes were calculated using random effects models. The meta-analysis found that scalding under commercial abattoir conditions effectively reduced the prevalence of Enterobacteriaceae (RR: 0.05, 95% CI: 0.02 to 0.12, I2 = 87%) and ACC (MD: -2.84, 95% CI: -3.50 to -2.18, I2 = 99%) on pig carcasses. Similarly, significant reductions of these two groups of bacteria on carcasses were also found after singeing (RR: 0.25, 95% CI: 0.14 to 0.44, I2 = 90% and MD: -1.95, 95% CI: -2.40 to -1.50, I2 = 96%, respectively). Rectum sealing effectively reduces the prevalence of Y. enterocolitica on pig carcasses (RR: 0.60, 95% CI: 0.41 to 0.89, I2 = 0%). Under commercial abattoir conditions, hot water washing significantly reduced ACC (MD: -1.32, 95% CI: -1.93 to -0.71, I2 = 93%) and generic E. coli counts (MD: -1.23, 95% CI: -1.89 to -0.57, I2 = 61%) on pig carcasses. Conventional dry chilling reduced Enterobacteriaceae prevalence on pig carcasses (RR: 0.32, 95% CI: 0.21 to 0.48, I2 = 81%). Multiple carcass interventions significantly reduced Enterobacteriaceae prevalence (RR: 0.11, 95% CI: 0.05 to 0.23, I2 = 94%) and ACC on carcasses (MD: -2.85, 95% CI: -3.33 to -2.37, I2 = 97%). The results clearly show that standard processing procedures of scalding and singeing and the hazard-based intervention of hot water washing are effective in reducing indicator bacteria on pig carcasses. The prevalence of Y. enterocolitica on pig carcasses was effectively reduced by the standard procedure of rectum sealing; nevertheless, this was the only intervention for Yersinia investigated under commercial conditions. High heterogeneity among studies and trials investigating interventions and overall lack of large, controlled trials conducted under commercial conditions suggest that more in-depth research is needed.

A review of the cavernicolous Trichopolydesmidae (Diplopoda, Polydesmida) from the Carpathian-Balkan arch and the Rhodope Mountains, with descriptions of two new genera and three new species.

All cavernicolous species of the millipede family Trichopolydesmidae from the Carpathian-Balkan arch and the Rhodope Mountains have been reviewed. At present the family has been shown to comprise five or six genera with eight or nine species. Two new genera have been described, viz., Balkanodesminus gen. nov., with two new species: B.dentatoides sp. nov. and B.serbicus sp. nov., from Bulgaria and Serbia, respectively, and the monospecific Rhodopodesmus gen. nov., with R.niveus sp. nov., from Bulgaria. Two new combinations and one new status have been proposed: Balkanodesminusbulgaricus (Strasser, 1962) comb. nov. ex Bacillidesmusbulgaricus Strasser, 1962 and Balkanodesminusdentatus (Strasser, 1966a) comb. nov., stat. nov. ex Bacillidesmusbulgaricusdentatus Strasser, 1966a. All genera and species are diagnosed with the inclusion of the most relevant remarks for each of them. Old museum types are checked for Bacillidesmusfiliformis (Latzel, 1884) with lectotype designation, as well as for Trichopolydesmuseremitis Verhoeff, 1898. An identification key to all six genera and a distribution map for the eight species are provided, as well as brief remarks and general considerations on the family Trichopolydesmidae.

Prevalence and Persistence of Multidrug-Resistant Yersinia enterocolitica 4/O:3 in Tonsils of Slaughter Pigs from Different Housing Systems in Croatia.

Yersinia enterocolitica is one of the priority biological hazards in pork inspection. Persistence of the pathogen, including strains resistant to antimicrobials, should be evaluated in pigs from different housing systems for risk ranking of farms. In this 2019 study, tonsils were collected from 234 pigs, of which 69 (29.5%) were fattened on 3 big integrated farms, 130 (55.5%) on 10 medium-sized farms, and 35 (15%) on 13 small family farms. In addition, 92 pork cuts and minced meat samples from the same farms were tested for the presence of Y. enterocolitica using the culture method. Phenotypic and genetic characteristics of the isolates were compared with previously collected isolates from 2014. The overall prevalence of Y. enterocolitica in pig tonsils was 43% [95% CI 36.7−49.7]. In pigs from big integrated, medium-sized, and small family farms, the prevalence was 29%, 52%, and 40%, respectively. All retail samples of portioned and minced pork tested negative for pathogenic Y. enterocolitica, likely due to high hygienic standards in slaughterhouses/cutting meat or low sensitivity of culture methods in these matrices. The highest recovery rate of the pathogen from tonsils was found when alkali-treated PSB and CIN agar were combined. The biosecurity category of integrated and medium farms did not affect the differences in prevalence of Y. enterocolitica (p > 0.05), in contrast to family farms. Pathogenic ail-positive Y. enterocolitica biotype 4 serotype O:3 persisted in the tonsils of pigs regardless of the type of farm, slaughterhouse, and year of isolation 2014 and 2019. PFGE typing revealed the high genetic concordance (80.6 to 100%) of all the Y. enterocolitica 4/O:3 isolates. A statistically significant higher prevalence of multidrug-resistant Y. enterocolitica 4/O:3 isolates was detected in the tonsils of pigs from big integrated farms compared to the other farm types (p < 0.05), with predominant and increasing resistance to nalidixic acid, chloramphenicol, and streptomycin. This study demonstrated multidrug resistance of the pathogen in pigs likely due to more antimicrobial pressure on big farms, with intriguing resistance to some clinically relevant antimicrobials used in the treatment of yersiniosis in humans.

Yersinia enterocolitica in wild and peridomestic rodents within Great Britain, a prevalence study.

Yersinia enterocolitica is a human pathogen transmitted via the faecal-oral route among animals and humans and is a major foodborne public health hazard. This study explores the role of Y. enterocolitica transmission at the livestock-wildlife interface and investigates the potential role wild and peridomestic rodents play as a source of this zoonotic pathogen. The total of 342 faecal samples collected from the seven rodent species and one insectivore was examined using an optimized protocol to culture and identify Y. enterocolitica. Positive samples were also bioserotyped for grouping and determination of sample pathogenicity. Wildlife species sampled in this study were separated into two sample groups: randomly sampled (brown rats, house mice, wood mice, bank voles, field voles and the common shrew), as well as targeted sampling (red and grey squirrels). The overall prevalence of Y. enterocolitica in the randomly sampled population was 3.73%. Brown rats were chosen as sentinel species and tested to determine if location (pig farm vs non-pig farm) was a significant factor affecting Y. enterocolitica prevalence. In this study, location was not significant. All positive samples were found to be of biotype 1A, deemed non-pathogenic. Three of the samples were serotype 09, six were serotype 27 and five had an unidentifiable serotype. This study represents the first time Y. enterocolitica has been identified in these species of wildlife within mainland Britain. In addition, this study's findings are entirely novel and overall with regard to field voles and common shrews. However, the role of wild and peridomestic rodents in the transmission of pathogenic Y. enterocolitica remains unknown, as this study was unable to detect the presence of pathogenic Y. enterocolitica strains in these species.

Maurieseuma, a new genus to accommodate Hylebainosoma nontronense Mauriès & Kime, 1999, and the revalidation of the genus Romanosoma Mauriès, 2015 (Diplopoda: Chordeumatida: Haaseidae).

A new genus, Maurieseuma gen. nov., is established to accommodate the species Hylebainosoma nontronense Mauriès & Kime, 1999. As result, the following new combination is proposed: Maurieseuma nontronense (Mauriès & Kime, 1999) comb. nov. The new genus is diagnosed and briefly described with some new details missing in the previous two descriptions of the species accommodated in it. In addition, we consider Romanosoma Mauriès, 2015 as a valid genus, leaving Hylebainosoma Verhoeff, 1899 with two species. The similarities and differences between the genera Maurieseuma gen. nov. and Romanosoma, as well as with the remaining three genera of Haaseidae are briefly discussed. An identification key is given to all five genera of the family Haaseidae.

Adaptive Control of Nonlinear MIMO System With Orthogonal Endocrine Intelligent Controller.

In this article, a new intelligent hybrid controller is proposed. The controller is based on the combination of the orthogonal endocrine neural network (OENN) and orthogonal endocrine ANFIS (OEANFIS). The orthogonal part of the controller consists of Chebyshev orthogonal functions, which are used because of their recursive property, computational simplicity, and accuracy in nonlinear approximations. Artificial endocrine influence on the controller is achieved by introducing excitatory and inhibitory glands to the OENN part of the structure, in the form of postsynaptic potentials. These potentials provide a network with the capability of additional self-regulation in the presence of external disturbances. The intelligent structure is trained using a developed learning algorithm, which consists of both offline and online learning procedures: online learning for fitting OENN substructure and offline learning for adjusting OEANFIS parameters. The learning process is expanded by introducing the learning rate adaptation algorithm, which bases its calculations on the sign of the error difference. Finally, the proposed intelligent controller was experimentally tested for control of a nonlinear multiple-input-multiple-output two rotor aerodynamical system. During the test phase, an additional four related intelligent control logics and default PID-based controllers were used, and tracking performance comparisons were performed. The proposed controller showed notably better online results in comparison to other control algorithms. The major deficiencies of the structure are complexity and noticeably large training computation time, but these drawbacks can be neglected if tracking performances of a dynamical system are of the highest importance.

Beef abattoir interventions in a risk-based meat safety assurance system.

In risk-based meat safety assurance system, the use of interventions is intended to accomplish the meat safety targets on chilled carcasses, particularly in situations when an abattoir is unable to sufficiently reduce risks arising from specific farms/animal batches by using process hygiene alone. Furthermore, interventions are considered whenever food safety authorities identify meat production processes associated with high risks for consumers. This paper overviews the role of beef interventions in a risk-based, meat safety assurance system. Cattle hide interventions (chemical hide washes and microbial immobilisation treatment with shellac) and beef carcass interventions (pasteurisation treatments with hot water and/or steam and organic (lactic) acid washes), show consistent reduction effects of aerobic bacteria and faecal indicators and reduced prevalences of naturally present VTEC and Salmonella. The review also identified interventions where there was a lack of data and further research was needed, and other contextual factors to inform the risk management decisions for further development of risk-based meat safety assurance system.

The millipede genera Amblyiulus Silvestri, 1896 and Syrioiulus Verhoeff, 1914 in the Caucasus, with notes on their distributions (Diplopoda, Julida, Julidae).

In the Caucasus, the genera Amblyiulus Silvestri, 1896 and Syrioiulus Verhoeff, 1914 are shown to include two and four species, respectively: Amblyiulus georgicus Lohmander, 1932, from Georgia and Armenia, A. hirtus sp. nov., from Azerbaijan and Dagestan, Russia, Syrioiulus adsharicus (Lohmander, 1936), from Georgia, S. continentalis (Attems, 1903), from Azerbaijan and Iran, S. taliscius (Attems, 1927), from Azerbaijan, and S. armeniacus sp. nov., from Armenia. All these six species are described, illustrated, and keyed, and their distributions are mapped and discussed, based on the literature data and abundant new samples.

Macedomeris, a new monotypic doderiinine genus (Diplopoda, Glomerida) from a cave in North Macedonia, Balkan Peninsula.

Here we describe a new monotypic glomerid genus, Macedomeris gen. nov., with Macedomeris ivoi sp. nov. (a presumed troglobiont) as its type species. The new genus clearly differs from all other genera within the order Glomerida by the combination of several morphological characters: the presence of a characteristic deep lateral pit ("Ohrgrube") on both sides of the thoracic shield, the absence of striking ornamentation on tergites, the fusion of tergite 11 with the anal shield, and the lack of a large medial hump. In addition, Macedomeris gen. nov. differs from other members of the Glomerida by its general appearance, the presence of 2 or 3 vestigial ommatidia and a very wide syncoxite of a 2-segmented leg-pair 17 in the male. Notes on its ecology, troglomorphic features, and relationships with similar members of the tribe Doderiini are also given.

Haasea Verhoeff, 1895-a genus of tumultuous history and chaotic records-redefinition, revision of taxonomy and geographic distributions, with descriptions of two new species from Austria and Serbia (Diplopoda, Chordeumatida, Haaseidae).

In this paper we revise the chordeumatidan genus Haasea Verhoeff, 1895 for the first time and describe two new species viz., H. gruberi sp. nov. and H. makarovi sp. nov. discovered in Austria and Serbia, respectively. A new terminology is proposed to standardize the description of the gonopod structures in the genus. Type material obtained from several institutions was examined and documented herein, whereby lectotypes are designated. We clarified the taxonomic status of a few taxa and consider the species H. norica (Verhoeff, 1913) and H. guidononveilleri Makarov, 2008 as a junior subjective synonyms of H. cyanopida (Attems, 1903) and H. vidinensis (Strasser, 1973a), respectively. The following subspecies or varieties, viz., Orobainosoma filicis ossiacum Verhoeff, 1939b, Orobainosoma flavescens vornatscheri Verhoeff, 1935, Orobainosoma hungaricum orientale Tabacaru, 1965, and Orobainosoma inflatum var. aspidiorum Verhoeff, 1929 are here regarded as junior subjective synonyms of their nominal taxa. The taxonomic relationships within the genus Haasea are discussed and an identification key to its 17 species is presented, based on number of body segments and gonopod structures.                Maps showing species occurences based on historical and recent records are presented to understand their respective geographic ranges. H. flavescens is now deleted from the list of species in Croatia, Bosnia and Herzegovina, Slovenia and Italy as these records were based on misidentified material. H. inflata is deleted from the fauna of Bosnia and Herzegovina, whereas H. hungarica is newly recorded from Austria, Serbia and Slovenia.

Geophilus serbicus sp. nov., a new species from the Balkan Peninsula (Chilopoda: Geophilomorpha: Geophilidae).

Geophilus serbicus sp. nov., a new epigeic centipede species, is described and illustrated based on specimens collected from the Stara Planina Mountains (the Balkan Mountain Range), Eastern Serbia, Balkan Peninsula. Considerations on the taxonomic relationships with some similar Geophilus species are briefly presented, and the distribution of the new species is mapped.

Two new species of the millipede genus Metonomastus Attems, 1937 from the Balkan Peninsula (Diplopoda, Polydesmida, Paradoxosomatidae).

In addition to the eleven previously known species of the Mediterranean genus Metonomastus, two more species are described: M.petrovi sp. n., from the Rhodopi Mts. and Bunardzhik Hill in Bulgaria, and M.radjai sp. n., from the island of Mljet in Croatia. The relationships between the congeners and their distributions are briefly discussed. All 13 species of the genus are keyed.

Seven new taxa of Leptodirini (Coleoptera: Leiodidae: Cholevinae) from the Balkan Peninsula.

Seven new troglobitic leiodid beetle taxa (six new species and one new subspecies) from several caves and pits in the Balkan Peninsula (Bosnia and Herzegovina and Serbia) are described and diagnosed. Three new species belong to the genus Adelopidius Apfelbeck, 1907, two-to the genus Pholeuonopsis Apfelbeck, 1901, one-to the genus Leonhardia Reitter, 1901, while a new subspecies belongs to the genus Apholeuonus Reitter, 1889. All important morphological characteristics of the new taxa have been mentioned and imaged, including the aspects of the male and female genitalia. The new leiodid taxa are properly distinguished from their relatives and are endemics of the Dinaric mountain chain. A key to Adelopidius taxa is added.

Review of the genus Typhloiulus Latzel, 1884 in the Dinaric region, with a description of four new species and the first description of the male of Typhloiulus insularis Strasser, 1938 (Diplopoda: Julida: Julidae).

A review of the genus Typhloiulus Latzel, 1884 (Julida: Julidae) in the Dinaric region is given. Previously published and new faunistic records are provided for each species, together with notes for some of them. Four new species are described: T. clavatus sp. nov., T. gracilis sp. nov., T. opisthonodus sp. nov., and T. parvulus sp. nov., all from caves in Dalmatia and Herzegovina. In addition, we provide the first description of the male of T. insularis Strasser, 1938. Some taxonomic relationships among Typhloiulus species and biogeographical aspects (with distribution maps) of the genus are discussed.

From the depths: Heterocaucaseuma deprofundum sp. nov., the world's deepest-occurring millipede (Diplopoda, Chordeumatida, Anthroleucosomatidae) from caves in the western Caucasus.

We describe a new anthroleucosomatid millipede, Heterocaucaseuma deprofundum sp. nov., found in the second and third deepest caves of our planet, Krubera-Voronja and Sarma, in Abkhazia, western Caucasus. A brief discussion on its taxonomy and relationships within the Caucaseuma complex and genus Heterocaucaseuma is provided, together with new faunistic records on other three species of Heterocaucaseuma. Notes on the distribution and troglomorphy of the genus Heterocaucaseuma are added. Ecological information and data on the subterranean community of the Krubera-Voronja Cave are updated. We also discuss the vertical distribution of the new species in caves and the presence of an ectoparasitic fungi of the order Laboulbeniales. This new species is currently the world's deepest-occurring millipede, also representing one of the largest known chordeumatidans.

Dalmatosomatidae, a new monotypic family, and Dalmatosoma agaricum gen. et sp. nov. (Diplopoda: Chordeumatida: Craspedosomatidea) from Croatia, Balkan Peninsula.

A new millipede species, Dalmatosoma agaricum gen. et sp. nov., is described from a cave in Dalmatia (Croatia). The new taxon is clearly unique among chordeumatidans in both anterior and posterior gonopod structure and shows some noteworthy habitus features. We therefore here establish a new monotypic family, viz., Dalmatosomatidae, for the given taxon and place it within the suborder Craspedosomatidea. The new family is briefly discussed and compared with all other chordeumatidans.