Module-based construction of plasmids for chromosomal integration of the fission yeast Schizosaccharomyces pombe.

Integration of an external gene into a fission yeast chromosome is useful to investigate the effect of the gene product. An easy way to knock-in a gene construct is use of an integration plasmid, which can be targeted and inserted to a chromosome through homologous recombination. Despite the advantage of integration, construction of integration plasmids is energy- and time-consuming, because there is no systematic library of integration plasmids with various promoters, fluorescent protein tags, terminators and selection markers; therefore, researchers are often forced to make appropriate ones through multiple rounds of cloning procedures. Here, we establish materials and methods to easily construct integration plasmids. We introduce a convenient cloning system based on Golden Gate DNA shuffling, which enables the connection of multiple DNA fragments at once: any kind of promoters and terminators, the gene of interest, in combination with any fluorescent protein tag genes and any selection markers. Each of those DNA fragments, called a 'module', can be tandemly ligated in the order we desire in a single reaction, which yields a circular plasmid in a one-step manner. The resulting plasmids can be integrated through standard methods for transformation. Thus, these materials and methods help easy construction of knock-in strains, and this will further increase the value of fission yeast as a model organism.

The kinetochore protein Kis1/Eic1/Mis19 ensures the integrity of mitotic spindles through maintenance of kinetochore factors Mis6/CENP-I and CENP-A.

Microtubules play multiple roles in a wide range of cellular phenomena, including cell polarity establishment and chromosome segregation. A number of microtubule regulators have been identified, including microtubule-associated proteins and kinases, and knowledge of these factors has contributed to our molecular understanding of microtubule regulation of each relevant cellular process. The known regulators, however, are insufficient to explain how those processes are linked to one another, underscoring the need to identify additional regulators. To find such novel mechanisms and microtubule regulators, we performed a screen that combined genetics and microscopy for fission yeast mutants defective in microtubule organization. We isolated approximately 900 mutants showing defects in either microtubule organization or the nuclear envelope, and these mutants were classified into 12 categories. We particularly focused on one mutant, kis1, which displayed spindle defects in early mitosis. The kis1 mutant frequently failed to assemble a normal bipolar spindle. The responsible gene encoded a kinetochore protein, Mis19 (also known as Eic1), which localized to the interface of kinetochores and spindle poles. We also found that the inner kinetochore proteins Mis6/CENP-I and Cnp1/CENP-A were delocalized from kinetochores in the kis1 cells and that kinetochore-microtubule attachment was defective. Another mutant, mis6, also displayed similar spindle defects. We conclude that Kis1 is required for inner kinetochore organization, through which Kis1 ensures kinetochore-microtubule attachment and spindle integrity. Thus, we propose an unexpected relationship between inner kinetochore organization and spindle integrity.

Targeting Alp7/TACC to the spindle pole body is essential for mitotic spindle assembly in fission yeast.

The conserved TACC protein family localises to the centrosome (the spindle pole body, SPB in fungi) and mitotic spindles, thereby playing a crucial role in bipolar spindle assembly. However, it remains elusive how TACC proteins are recruited to the centrosome/SPB. Here, using fission yeast Alp7/TACC, we have determined clustered five amino acid residues within the TACC domain required for SPB localisation. Critically, these sequences are essential for the functions of Alp7, including proper spindle formation and mitotic progression. Moreover, we have identified pericentrin-like Pcp1 as a loading factor to the mitotic SPB, although Pcp1 is not a sole platform.

Cuf2 boosts the transcription of APC/C activator Fzr1 to terminate the meiotic division cycle.

The number of nuclear divisions in meiosis is strictly limited to two. Although the precise mechanism remains unknown, this seems to be achieved by adjusting the anaphase-promoting complex/cyclosome (APC/C) activity to degrade cyclin. Here, we describe a fission yeast cuf2 mutant that enters into a third nuclear division cycle, represented by ectopic spindle assembly and abnormal chromosome segregation. Cuf2 is a meiotic transcription factor, and its critical target is fzr1(+)/mfr1(+), which encodes a meiotic APC/C activator. fzr1Δ also enters a third nuclear division. Thus, Cuf2 ensures termination of the M-phase cycle by boosting Fzr1 expression to generate functional gametes.

Nuclear compartmentalization is abolished during fission yeast meiosis.

In eukaryotic cells, the nuclear envelope partitions the nucleus from the cytoplasm. The fission yeast Schizosaccharomyces pombe undergoes closed mitosis in which the nuclear envelope persists rather than being broken down, as in higher eukaryotic cells. It is therefore assumed that nucleocytoplasmic transport continues during the cell cycle. Here we show that nuclear transport is, in fact, abolished specifically during anaphase of the second meiotic nuclear division. During that time, both nucleoplasmic and cytoplasmic proteins disperse throughout the cell, reminiscent of the open mitosis of higher eukaryotes, but the architecture of the S. pombe nuclear envelope itself persists. This functional alteration of the nucleocytoplasmic barrier is likely induced by spore wall formation, because ectopic induction of sporulation signaling leads to premature dispersion of nucleoplasmic proteins. A photobleaching assay demonstrated that nuclear envelope permeability increases abruptly at the onset of anaphase of the second meiotic division. The permeability was not altered when sporulation was inhibited by blocking the trafficking of forespore-membrane vesicles from the endoplasmic reticulum to the Golgi. The evidence indicates that yeast gametogenesis produces vesicle transport-mediated forespore membranes by inducing nuclear envelope permeabilization.

Reaction of cellulose-starch gel mixtures in water at high-temperatures and pressures for developing continuous batch microreactor systems.

Cellulose-starch gel mixtures (4 wt% cellulose and 4 wt% starch gel) were mixed with water in a 9:1, water:organic, volume ratios and rapidly heated (ca. 20s) to high-temperatures (ca. 520 degrees C) and high-pressures (ca. 800 MPa) in 0.04 microL microreactors to examine their characteristics and reaction products. Contents of the microreactors were observed during the heating with microscopy and residues were analyzed with chromatography and spectroscopy. At high water loading densities (ca. 980 kg/m(3)), heating of either starch gels or cellulose-starch gel mixtures gave a light yellow colored liquid associated with 5-hydroxymethylfurfural along with solid products that had strong absorptions at 1630 and 1530 cm(-1) associated with aromatic and polycyclic ring compounds. At low water loading densities (<700 kg/m(3)), a brown colored liquid was generated that had an oil-like, paraffinic hydrocarbon character along with gases, but no particles were formed. The cellulose-starch gels studied in this work can possibly be used as feedstocks in continuous batch microreactor systems.

Reaction chemistry and phase behavior of lignin in high-temperature and supercritical water.

Decomposition of organosolve lignin in water/phenol solutions was studied in a 50 nL micro-reactor coupled with optical, Raman and infrared microscopies at temperatures up to 600 degrees C and water densities up to 1165 kg/m3. It was found that when phenol was used with {lignin+water} mixtures that a homogenous phase was formed that seemed to promote the decomposition of lignin into phenolic fragments by hydrolysis and pyrolysis. Phenol, along with the homogenous reaction conditions also inhibited re-polymerization of the phenolics and promoted oil formation. On the other hand, in the absence of phenol, lignin remained as a heterogeneous phase with water over the range of conditions studied. The homogeneous conditions and conditions for inhibiting char formation by phenol were elucidated and it was found that mixtures of phenol and lignin become homogeneous at 400-600 degrees C and high water densities of 428-683 kg/m3, corresponding to maximum pressures of 93 MPa. These results were further used to propose reaction paths.

Estimation of local density augmentation and hydrogen bonding between pyridazine and water under sub- and supercritical conditions using UV-vis spectroscopy.

The local density around pyridazine was evaluated by examining the UV-vis spectral shift of pyridazine in a high-pressure liquid state and supercritical water from 25 to 450 degrees C and from 20 to 45 MPa. Augmentation of the local density was observed from 380 to 420 degrees C, and showed the maximum at a lower density than the critical density of water. The degree of hydrogen bonding was estimated in consideration of the local density augmentation. The estimated degree of hydrogen bonding under subcritical conditions without any difference between the local density and the bulk density corresponded to the previously reported results with a UV-vis absorbance spectral shift of quinoline and an NMR proton chemical shift. However, the degree of hydrogen bonding near the critical point of water was larger than that in the case that the local density augmentation was not taken into account. At 380 degrees C and 0.2 g cm(-3) of the bulk density there are 30% as many hydrogen bonds as those under the ambient condition, and it was around 1.5-times that without considering local-density augmentation.

Determination of Kamlet-Taft solvent parameters pi* of high pressure and supercritical water by the UV-Vis absorption spectral shift of 4-nitroanisole.

Kamlet-Taft solvent parameters, pi*, of high pressure and supercritical water were determined from 16-420 degrees C based on solvatochromic measurements of 4-nitroanisole. For the measurements, an optical cell that could be used at high temperatures and pressures was developed with the specification of minimal dead space. The low dead space cell allowed us to measure the absorption spectra of 4-nitroanisole at high temperature conditions before appreciable decomposition occurred. The behavior of pi* in terms of water density (pi* = 1.77rho- 0.71) was found to be linear, except in the near critical region, in which deviations were observed that could be attributed to local density augmentation. Excess density, which was defined as the difference between local density and bulk density, showed a maximum near the critical density of water. The frequencies of UV-Vis spectra of 4-(dimethylamino)benzonitrile and N,N-dimethyl-4-nitroaniline were correlated with pi* based on a linear solvation energy relationship (LSER) theory. Local density augmentation around 4-nitroanisole and that around 4-(dimethylamino)benzonitrile were similar but the augmentation observed around N,N-dimethyl-4-nitroaniline was larger.

Amination of n-hexanol in supercritical water.

The amination of 1-n-hexanol followed by amidation was carried out in supercritical water at 380, 400, and 420 degrees C and water densities of 0.1, 0.3, and 0.5 g/cm3. The replacement of the hydroxyl group with the amino group was found to occur in 1-n-hexanol using ammonium acetate in supercritical water without the addition of a metal or an acid catalyst. The yield of the final product, N-n-hexylacetamide, increased by increasing the reaction temperature, water density, and the amount of ammonium acetate. The yield and the selectivity of N-n-hexylacetamide were 78.5% and 87.5%, respectively, in supercritical water at 400 degrees C, 0.5 g/cm3, for 10 min.

Nucleotide sequences of pigeon feather keratin genes.

We analyzed two pigeon feather keratin clones from a cosmid pigeon genomic library. Each of the clones contained three feather keratin genes that had the same general structure: a 5' non-coding region separated by an intron, a protein-coding region encoding a protein of 100 amino acids, and a 3' non-coding region. Length and transcriptional organization of the genes were variable. The length variation, about 1.2-3.7 kb, was mainly due to the difference in the length of the 3' non-coding region, and the longer genes had opposite transcriptional organization in contrast to the shorter genes. The nucleotide sequences of the coding region were very similar among the six genes but not the same.

Production of cellulose II from native cellulose by near- and supercritical water solubilization.

We explored conditions for dissolving microcrystalline cellulose in high-temperature and high-pressure water without catalyst and in order to produce cellulose II in a rapid and selective manner. For understanding reactions of microcrystalline cellulose in subcritical and supercritical water, its solubilization treatment was conducted using a continuous-flow-type microreactor. It was found that cellulose could dissolve in near- and supercritical water at short treatment times of 0.02-0.4 s, resulting in the formation of cellulose II in relatively high yield after the treatment. Next, characteristics of the cellulose II obtained were investigated. As a result, it was confirmed that the relative crystallinity index and the degree of polymerization of the cellulose II were high values ranging from 80 to 60% and from 50 to 30%, respectively. From these findings, it was suggested that this method had high potential as an alternative technique for the conventional cellulose II production method.

Fractionation of sugarcane bagasse by hydrothermal treatment.

Hydrothermal treatment of sugarcane bagasse was conducted using a semi-batch reactor to develop a new biomass fractionation method that has low impact in the environment. A continuously increasing temperature was used in this treatment. It was found that hemicellulose and lignin could be mainly extracted as a water-soluble fraction at 200-230 degrees C, while the cellulose fraction was hydrolyzed at higher temperatures (230-280 degrees C) or recovered as solid residue from this treatment. Detailed analyses of the solid residue indicated that the crystal structure and the chemical composition of the residue were in good accordance with those of untreated crystalline cellulose. These experimental and analytical findings show that this method is promising for removal of hemicellulose and lignin from woody biomass without any catalyst and organic solvent.

Monodispersed quinacridone nanocrystals prepared by a high-temperature and high-pressure liquid crystallization method.

Monodispersed quinacridone nanocrystals were fabricated by a high-temperature and high-pressure liquid crystallization method, which proved to be an advanced technique for fabricating nanocrystals of pigment compound. The aqueous dispersion liquid of quinacridone nanocrystals was very stable. The nanocrystats had a spherical shape with an average size of 60 nm when water was used as the high-temperature and high-pressure liquid at 260 degrees C and cooling solvent. The crystal structure of the nanocrystals could be controlled by varying the experimental conditions.

Hydrolysis Reaction Condition for Quantification of Ginkgo Flavonoid Glycosides / 分析化学

Reliable reaction condition has been developed for acidic-hydrolysis of ginkgo extract: the reaction temperature is 70～71℃, reaction time 4 h and stirred at a low velocity