Mechanisms of Mn(V)-Oxo to Mn(IV)-Oxyl Conversion: From Closed-Cubane Photosystem II to Mn(V) Catalysts and the Role of the Entering Ligands.

The low activation barrier for O-O coupling in the closed-cubane Oxygen-Evolving Centre (OEC) of Photosystem II (PSII) requires water coordination with the Mn4 'dangler' ion in the Mn(V)-oxo fragment. This coordination transforms the Mn(V)-oxo complex into a more reactive Mn4(IV)-oxyl species, enhancing O-O coupling. This study explains the mechanism behind the coordination and indicates that in the most stable form of the OEC, the Mn4 fragment adopts a trigonal bipyramidal geometry but needs to transition to a square pyramidal form to be activated for O-O coupling. This transition stabilizes the Mn4 dxy orbital, enabling electron transfer from the oxo ligand to the dxy orbital, converting the oxo ligand into an oxyl species. The role of the water is to coordinate with the square pyramidal structure, reducing the energy gap between the oxo and oxyl forms, thereby lowering the activation energy for O-O coupling. This mechanism applies not only to the OEC system but also to other Mn(V)-based catalysts. For other catalysts, ligands such as OH- stabilize the Mn(IV)-oxyl species better than water, improving catalyst activation for reactions like C-H bond activation. This study is the first to explain the Mn(V)-oxo to Mn(IV)-oxyl conversion, providing a new foundation for Mn-based catalyst design.

Elucidating the catalytic mechanisms of O2 generation by [Mn2(µ-O)2(terpy)2(OH2)2]3+ using DFT calculations: a focus on ClO- as oxidant.

The experimentally reported Mn(IV)Mn(III) complex [Mn2(µ-O)2(terpy)2(OH2)2]3+ has been observed catalyzing O2 generation with oxidants like ClO- and HSO5-. Previous mechanistic studies primarily focused on O2 generation with HSO5-, concluding that Mn(IV)Mn(III) acts as a catalyst, generating a Mn(IV)Mn(IV)-oxyl species as a key intermediate responsible for O-O bond formation. This computational study employs DFT calculations to investigate whether the catalytic generation of O2 using ClO- follows the same mechanism previously identified with HSO5- as the oxidant, or if it proceeds through an alternate pathway. To this end, we explored multiple pathways using ClO- as the oxidant. Interestingly, our findings confirm that in the case of ClO- as the oxidant, similar to what was observed with HSO5-, the Mn(IV)Mn(IV)-oxyl species indeed plays a crucial role in driving the catalytic evolution of O2 with the potential formation of the binuclear complexes Mn(IV)Mn(IV)-oxy and Mn(IV)Mn(IV)-OH during the reaction. These complexes are reactive in producing O2, with activation free energies of 15.9 and 14.3 kcal mol-1, respectively. However, our calculations revealed that the Mn(IV)Mn(IV)-oxyl complex is significantly more reactive in producing O2 than Mn(IV)Mn(IV)-oxy and Mn(IV)Mn(IV)-OH, with a lower free energy barrier of 8.1 kcal mol-1. Consequently, even though Mn(IV)Mn(IV)-oxyl is predicted to be present in much lower concentrations than Mn(IV)Mn(IV)-oxy and Mn(IV)Mn(IV)-OH, it emerges as the species acting as the active catalyst for catalytic O2 generation. This study enhances our knowledge of high oxidation state (+3 and +4) manganese chemistry, highlighting its key role in catalysis and paving the way for more efficient Mn-based catalysts with broad applications.

Gold(I)-Catalyzed Intramolecular 7-endo-dig Cyclization of Triene-Yne Systems: New Access towards Azulenothiophenes.

We report the direct synthesis of new azulene derivatives through gold-catalyzed cyclization reactions. A five-membered ring as backbone in the applied triene-yne substrates turned out to be crucial to induce the 7-endo-dig cyclization mode necessary to trigger azulene formation. The obtained targets are of high interest due to their potential applications in different fields, like organic materials, medicine or cosmetics. UV/Vis spectra and cyclic voltammetry were measured, based on these the electronic properties were determined. Short two or three step sequences towards the applied starting materials make this approach synthetically highly attractive.

Advancing Gold Redox Catalysis: Mechanistic Insights, Nucleophilicity-Guided Transmetalation, and Predictive Frameworks for the Oxidation of Aryl Gold(I) Complexes.

Gold redox catalysis, often facilitated by hypervalent iodine(III) reagents, offers unique reactivity but its progress is mainly hindered by an incomplete mechanistic understanding. In this study, we investigated the reaction between the gold(I) complexes [(aryl)Au(PR3 )] and the hypervalent iodine(III) reagent PhICl2 , both experimentally and computationally and provided an explanation for the formation of divergent products as the ligands bonded to the gold(I) center change. We tackled this essential question by uncovering an intriguing transmetalation mechanism that takes place between gold(I) and gold(III) complexes. We found that the ease of transmetalation is governed by the nucleophilicity of the gold(I) complex, [(aryl)Au(PR3 )], with greater nucleophilicity leading to a lower activation energy barrier. Remarkably, transmetalation is mainly controlled by a single orbital - the gold dx 2 -y 2 orbital. This orbital also has a profound influence on the reactivity of the oxidative addition step. In this way, the fundamental mechanistic basis of divergent outcomes in reactions of aryl gold(I) complexes with PhICl2 was established and these observations are reconciled from first principles. The theoretical model developed in this study provides a conceptual framework for anticipating the outcomes of reactions involving [(aryl)Au(PR3 )] with PhICl2 , thereby establishing a solid foundation for further advancements in this field.

Domino Cyclization Reaction of o-Diisocyanoarenes for the Synthesis of Imidazo[1,2-a]pyridinobenzimidazole Backbones.

An efficient procedure to access a variety of connected imidazo[1,2-a]pyridine and benzimidazole skeletons through the C-N bond was described as a new type of Buchwald-Hartwig reaction. Furthermore, the bis(imidazo[1,2-a]pyridin-3-yl)aryl-1,2-diamine scaffolds were obtained by changing the equivalent ratio of the starting materials. Some advantages of the protocol are the formation of four new bonds (C═C, C-N), a transition-metal-free reaction, a broad substrate scope, high yields, and mild reaction conditions. The reaction mechanism was confirmed on the basis of DFT calculations.

Dipole-Transmissive 1,3-Dipolar Cycloadditions for the Rapid Construction of Polycyclic N-Heterocycles: Synthetic and Mechanistic Investigations.

The investigation of distinctive dipole-transmissive dipolar cycloaddition (DTDC) methodology and the formalisation of this concept is reported. A DTDC procedure was able to be developed by taking advantage of the structural complementarity of azide and diazoalkane 1,3-dipoles. Intramolecular azide-alkene 1,3-DCs followed by spontaneous dipole transmission upon work-up furnished intermediate α-diazoisoindole and α-diazoisoquinoline substrates bearing the key secondary diazoalkane 1,3-dipole. N-Derivatisation of the intermediate α-diazoisoindole and α-diazoisoquinolines with a tethered secondary dipolarophile followed by a subsequent 1,3-DC allowed for rapid construction of a range of functionalised polycyclic N-heterocycles. Integrated experimental and theoretical studies established requirements for product formation and revealed the likely mechanistic basis of divergent reactivity observed.

B(3,4,5-F3H2C6)3 Lewis acid-catalysed C3-allylation of indoles.

Herein we report the B(3,4,5-F3H2C6)3-catalysed C3-allylation of indoles using allylic esters. 25 examples of C3-allylated products are presented in up to 97% yield. The mechanism for the reaction was explored using detailed Density Functional Theory (DFT) studies.

Factors Influencing the Chemoselectivity of Pd(OAc)2 -Catalyzed Cyclization Reactions Involving 1,6-Enynes as a Substrate and PhI(OAc)2 as a Reagent.

It is well documented in the literature that 1,6-enynes are cyclized using PhI(OAc)2 (PIDA) in the presence of Pd(OAc)2 as a catalyst to yield cyclopropyl ketones. In contrast, it has been reported that when 1,6-enynes are substituted by a hydroxy group at the α-position to the alkyne, the chemoselectivity of the cyclization reaction is altered, and polycyclic oxa-heterocycles are formed. This suggests that the hydroxy substituent plays a crucial role in changing the mechanism of the reaction. The aim of this study is to use density functional theory (DFT) calculations at the SMD/M06-D3/def2TZVP//SMD/M06/SDD,6-31G(d) level of theory to shed light on the reason for this change by investigating the detailed mechanistic aspects of these transformations. This study demonstrates that the electronic nature of the Pd catalyst changes from π-philicity to oxophilicity during the catalytic cycle, and this change plays an essential role in controlling the chemoselectivity of the cyclization reactions. In addition, it was found that (1) the hypervalent iodine reagent PIDA serves not only as an oxidant for the oxidation of Pd(II) to Pd(IV), but also as a nucleophile that drives the acetoxypalladation step of the reaction, (2) the oxidation of Pd(II) to Pd(IV) by the iodonium ion [PhIOAc]+ occurs via an interesting mechanism involving coordination of [PhIOAc]+ to the Pd(II) centre, followed by a twist in the hypervalent iodine, and (3) Pd π-complexes are not very susceptible to oxidation. (4) A Pd(II) complex can be six coordinate if the Pd centre is partially oxidized.

Mechanistic details for oxidative addition of PhICl2 to gold(I) complexes.

This study demonstrates that the oxidative addition of hypervalent iodine PhICl2 to Au(I) complexes LAuAr follows an unprecedented stepwise mechanism. The energy of the Au(I) dx2-y2 orbital determines the ease of the oxidative addition reaction; the fewer electron-withdrawing substituents present on the Ar ligand, the higher the energy of the dx2-y2 orbital and the easier the oxidative addition.

An unexpected synthesis of azepinone derivatives through a metal-free photochemical cascade reaction.

Azepinone derivatives are privileged in organic synthesis and pharmaceuticals. Synthetic approaches to these frameworks are limited to complex substrates, strong bases, high power UV light or noble metal catalysis. We herein report a mild synthesis of azepinone derivatives by a photochemical generation of 2-aryloxyaryl nitrene, [2 + 1] annulation, ring expansion/water addition cascade reaction without using any metal catalyst. Among the different nitrene precursors tested, 2-aryloxyaryl azides performed best under blue light irradiation and Brønsted acid catalysis. The reaction scope is broad and the obtained products underwent divergent transformations to afford other related compounds. A computational study suggests a pathway involving a step-wise aziridine formation, followed by a ring-expansion to the seven-membered heterocycle. Finally, water is added in a regio-selective manner, this is accelerated by the added TsOH.

Discovery of Periodinane Oxy-Assisted (POA) Oxidation Mechanism in the IBX-Controlled Oxidative Dearomatization of Pyrroles Mediated by Acetic Acid.

The 2-iodoxybenzoic acid (IBX)-controlled oxidative dearomatization of pyrroles occurs very slowly (or not all) in many organic solvents, including DMSO in which IBX is soluble. Interestingly, although IBX is only partially soluble in acetic acid, this solvent mediates the pyrrole oxidative dearomatization. With the aid of density functional theory (DFT) calculations, we have discovered a new mode of reactivity, termed the periodinane oxy-assisted (POA) oxidation mechanism, which explains this observation.

DFT characterisation of a PdII → IIII adduct, and a PdII complex formed after oxidative alkenylation of PdII by [Ph(alkenyl)IIII]+, in Pd-mediated synthesis of benzofurans involving PdIV, annulation and chain-walking.

The synthesis of benzofurans by the reaction of the palladium(II) complex Pd{1-C6H4-2-OCH(CO2Et)-C,C}(bipy) (bipy = 2,2'-bipyridine) with hypervalent iodine(III) reagents [Ph(CHCHR)I]+ has been examined by Density Functional Theory. Results highlight the role of oxidative alkenylation to form PdIV intermediates and the role of initial adduct formation in this process, an annulation process facilitated by PdII, and the role of 'chain-walking' at PdII centres to allow formation of the lowest energy product. Computation (R = Me) allows assignment of an initially formed adduct with a 'PdII → IIII' interaction at -50 °C, and, after oxidative alkenylation of PdII and reductive elimination from a PdIV centre via Ar⋯Alkenyl coupling, formation of a second intermediate with a structure consistent with NMR detection (R = n-hexyl) at -30 °C is obtained. This PdII complex, containing a coordinated alkene group in Pd{1-(RHCγCß)C6H4-2-OCαH(CO2Et)-η2-CαCß,C}(bipy), undergoes a 5-exo-trig annulation by forming a Cα-Cß bond to give a complex with a bicyclic carbon skeleton suitable for subsequent formation of benzofurans. A series of facile rearrangements including chain-walking results in formation of a lowest energy complex of three feasible hydrido(alkene)palladium(II) species, leading to decomposition and release of the observed benzofuran isomer isolated under synthesis conditions. The computational study allows reinterpretation of the NMR data reported previously, in particular the determination of barriers in the reaction pathway allowing assignment of structure for key intermediates.

Lewis Acid Assisted Brønsted Acid Catalysed Decarbonylation of Isocyanates: A Combined DFT and Experimental Study.

An efficient and mild reaction protocol for the decarbonylation of isocyanates has been developed using catalytic amounts of Lewis acidic boranes. The electronic nature (electron withdrawing, electron neutral, and electron donating) and the position of the substituents (ortho/meta/para) bound to isocyanate controls the chain length and composition of the products formed in the reaction. Detailed DFT studies were undertaken to account for the formation of the mono/di-carboxamidation products and benzoxazolone compounds.

Understanding the Influence of Donor-Acceptor Diazo Compounds on the Catalyst Efficiency of B(C6 F5 )3 Towards Carbene Formation.

Diazo compounds have been largely used as carbene precursors for carbene transfer reactions in a variety of functionalization reactions. However, the ease of carbene generation from the corresponding diazo compounds depends upon the electron donating/withdrawing substituents either side of the diazo functionality. These groups strongly impact the ease of N2 release. Recently, tris(pentafluorophenyl)borane [B(C6 F5 )3 ] has been shown to be an alternative transition metal-free catalyst for carbene transfer reactions. Herein, a density functional theory (DFT) study on the generation of carbene species from α-aryl α-diazocarbonyl compounds using catalytic amounts of B(C6 F5 )3 is reported. The significant finding is that the efficiency of the catalyst depends directly on the nature of the substituents on both the aryl ring and the carbonyl group of the substrate. In some cases, the boron catalyst has negligible effect on the ease of the carbene formation, while in other cases there is a dramatic reduction in the activation energy of the reaction. This direct dependence is not commonly observed in catalysis and this finding opens the way for intelligent design of this and other similar catalytic reactions.

A Rare Alder-ene Cycloisomerization of 1,6-Allenynes.

Thermally induced cycloisomerization reactions of 1,6-allenynes gives α-methylene-γ-lactams via intramolecular Alder-ene reactions. The mechanism is supported by computational and deuterium labelling studies. This thermal, non-radical method enables the discovery of a hitherto unknown route that proceeds via a divergent mechanism distinct from the previous [2+2] cycloisomerization manifold.

Exploring Cyclization Strategies to Access Stemona Alkaloids: Subtle Effects Influencing Reactivity in Intramolecular Michael Additions.

This report investigates the fundamental basis for rather surprising patterns of reactivity in Brønsted acid-mediated cyclizations of pyrrole substrates bearing pendant Michael acceptors that were identified during syntheses of Stemona alkaloids. Integrated experimental and theoretical studies reveal the profound influence that substituent effects have on the viability of these transformations. Additionally, we identify that electronic effects, in addition to barrier-lowering secondary orbital interactions within transition states, account for the exclusive preference for 7-endo-trig cyclizations over 6-exo-trig cyclizations.

Computational Study of Bridge Splitting, Aryl Halide Oxidative Addition to PtII , and Reductive Elimination from PtIV : Route to Pincer-PtII Reagents with Chemical and Biological Applications.

Density functional theory computation indicates that bridge splitting of [PtII R2 (µ-SEt2 )]2 proceeds by partial dissociation to form R2 Pta (µ-SEt2 )Ptb R2 (SEt2 ), followed by coordination of N-donor bromoarenes (L-Br) at Pta leading to release of Ptb R2 (SEt2 ), which reacts with a second molecule of L-Br, providing two molecules of PtR2 (SEt2 )(L-Br-N). For R=4-tolyl (Tol), L-Br=2,6-(pzCH2 )2 C6 H3 Br (pz=pyrazol-1-yl) and 2,6-(Me2 NCH2 )2 C6 H3 Br, subsequent oxidative addition assisted by intramolecular N-donor coordination via PtII Tol2 (L-N,Br) and reductive elimination from PtIV intermediates gives mer-PtII (L-N,C,N)Br and Tol2 . The strong σ-donor influence of Tol groups results in subtle differences in oxidative addition mechanisms when compared with related aryl halide oxidative addition to palladium(II) centres. For R=Me and L-Br=2,6-(pzCH2 )2 C6 H3 Br, a stable PtIV product, fac-PtIV Me2 {2,6-(pzCH2 )2 C6 H3 -N,C,N)Br is predicted, as reported experimentally, acting as a model for undetected and unstable PtIV Tol2 {L-N,C,N}Br undergoing facile Tol2 reductive elimination. The mechanisms reported herein enable the synthesis of PtII pincer reagents with applications in materials and bio-organometallic chemistry.

Tris(pentafluorophenyl)borane-Catalyzed Carbenium Ion Generation and Autocatalytic Pyrazole Synthesis-A Computational and Experimental Study.

In recent years, metal-free organic synthesis using triarylboranes as catalysts has become a prevalent research area. Herein we report a comprehensive computational and experimental study for the highly selective synthesis of N-substituted pyrazoles through the generation of carbenium species from the reaction between aryl esters and vinyl diazoacetates in the presence of catalytic tris(pentafluorophenyl)borane [B(C6 F5 )3 ]. DFT studies were undertaken to illuminate the reaction mechanism revealing that the in situ generation of a carbenium species acts as an autocatalyst to prompt the regiospecific formation of N-substituted pyrazoles in good to excellent yields (up to 81 %).

Catalytic role of amines in activation of PhICl2 from a computational point of view.

We thoroughly investigated mechanistic features of dichlorination of diazoacetates using PhICl2 catalysed by pyridine. We found that the pyridine serves as a catalyst for decomposition of PhICl2 to PhI and Cl2, leading to the dichlorination step being driven by the in situ generated Cl2. This type of activation was found to be applicable to other amine-catalysed chlorination reactions using PhICl2.

Oxidation of Electron-Deficient Phenols Mediated by Hypervalent Iodine(V) Reagents: Fundamental Mechanistic Features Revealed by a Density Functional Theory-Based Investigation.

Hypervalent iodine (HVI) compounds are efficient reagents for the double oxidative dearomatization of electron-rich phenols to o-quinones. We recently reported that an underexplored class of iodine(V) reagents possessing bidentate bipyridine ligands, termed Bi(N)-HVIs, could dearomatize electron-poor phenols for the first time. To understand the fundamental mechanistic basis of this unique reactivity, density functional theory (DFT) was utilized. In this way, different pathways were explored to determine why Bi(N)-HVIs are capable of facilitating these challenging transformations while more traditional hypervalent species, such as 2-iodoxybenzoic acid (IBX), cannot. Our calculations reveal that the first redox process is the rate-determining step, the barrier of which hinges on the identity of the ligands bound to the iodine(V) center. This crucial process is composed of three steps: (a) ligand exchange, (b) hypervalent twist, and (c) reductive elimination. We found that strong coordinating ligands disfavor these elementary steps, and, for this reason, HVIs bearing such ligands cannot oxidize the electron-poor phenols. In contrast, the weakly coordinating triflate ligands in Bi(N)-HVIs allow for the kinetically favorable oxidation. It was identified that trapping in situ-generated triflic acid is a key role played by the bidentate bipyridine ligands in Bi(N)-HVIs as this serves to minimize the decomposition of the ortho-quinone product.