Bond Dissociation Energies for Diatomic Molecules Containing 3d Transition Metals: Benchmark Scalar-Relativistic Coupled-Cluster Calculations for 20 Molecules.

Benchmark scalar-relativistic coupled-cluster calculations for dissociation energies of the 20 diatomic molecules containing 3d transition metals in the 3dMLBE20 database ( J. Chem. Theory Comput. 2015 , 11 , 2036 ) are reported. Electron correlation and basis set effects are systematically studied. The agreement between theory and experiment is in general satisfactory. For a subset of 16 molecules, the standard deviation between computational and experimental values is 9 kJ/mol with the maximum deviation being 15 kJ/mol. The discrepancies between theory and experiment remain substantial (more than 20 kJ/mol) for VH, CrH, CoH, and FeH. To explore the source of the latter discrepancies, the analysis used to determine the experimental dissociation energies for VH and CrH is revisited. It is shown that, if improved values are used for the heterolytic C-H dissociation energies of di- and trimethylamine involved in the experimental determination, the experimental values for the dissociation energies of VH and CrH are increased by 18 kJ/mol, such that D0(VH) = 223 ± 7 kJ/mol and D0(CrH) = 204 ± 7 kJ/mol (or De(VH) = 233 ± 7 kJ/mol and De(CrH) = 214 ± 7 kJ/mol). The new experimental values agree quite well with the calculated values, showing the consistency of the computation and the measured reaction thresholds.

Methane Activation by 5 d Transition Metals: Energetics, Mechanisms, and Periodic Trends.

Although it has been known for almost three decades that several 5d transition-metal cations will activate methane at room temperature, a more detailed examination of these reactions across the periodic table has only recently been completed. In this Minireview, we compare and contrast studies of the kinetic energy dependence of these reactions as studied using guided-ion-beam tandem mass spectrometry. Thermochemistry for the various products observed (MH+ , MH2+ , MC+ , MCH+ , MCH2+ , and MCH3+ ) are collected and periodic trends evaluated and discussed. The mechanisms for the reactions as elucidated by synergistic quantum chemical calculations are also reviewed. Recent spectroscopic evidence for the structures of the MCH2+ dehydrogenation products are discussed as well.

Discriminating Properties of Alkali Metal Ions Towards the Constituents of Proteins and Nucleic Acids. Conclusions from Gas-Phase and Theoretical Studies.

Quantitative insight into the structures and thermodynamics of alkali metal cations interacting with biological molecules can be obtained from studies in the gas phase combined with theoretical work. In this chapter, the fundamentals of the experimental and theoretical techniques are first summarized and results for such work on complexes of alkali metal cations with amino acids, small peptides, and nucleobases are reviewed. Periodic trends in how these interactions vary as the alkali metal cations get heavier are highlighted.

Hydrated copper ion chemistry: guided ion beam and computational investigation of Cu2+(H2O)n (n = 7-10) complexes.

Cross sections for the threshold collision-induced dissociation of Cu(2+)(H(2)O)(n), where n = 8 - 10, are measured using a guided ion beam tandem mass spectrometer. The primary dissociation pathway is found to be loss of a single water molecule followed by the sequential loss of additional water molecules until n = 8, at which point charge separation to form CuOH(+)(H(2)O)(4) (+) H(+)(H(2)O)(3) is observed to occur at a slightly lower energy than loss of a water molecule. Competition from charge separation prohibits the formation of appreciable amounts of the n = 7 or smaller complexes as reactants in the source. These findings indicate that Cu(2+) has a critical size of 8. Analysis of the data using statistical modeling techniques that account for energy distributions and lifetime effects yields primary and sequential bond dissociation energies (BDEs) for loss of one and two water molecules from n = 8 - 10 complexes as well as the barrier for charge separation from n = 8. More speculative analysis extends the thermochemistry obtained down to n = 5 and 6. Theoretical BDEs are determined from quantum chemical calculations using structures optimized at the B3LYP/6 311(+)G(d,p) level along with the lowest-energy isomers suggested by single point energies at the MP2(full), M06, B3LYP, and B3P86 levels of theory using a 6- 311(+)G(2d,2p) basis set. BDEs at 0K are converted to 298 K thermodynamic values using a rigid rotor/harmonic oscillator approximation. Experimental and theoretical entropies of activation suggest that a third solvent shell forms at n = 9, in accord with previous findings. The present work represents the first experimentally determined hydration enthalpies for the Cu(2+)(H(2)O)n system.

Quantum chemical study of the reactions between Pd+/Pt+ and H2O/H2S.

The study of the reactions of water and hydrogen sulfide with palladium and platinum cations has been completed in this work, in both low- and high-spin states. Our calculations predict that only the formation of platinum sulfide is exothermic (in both spin states), whereas for the remaining species the oxides and sulfides are found to be more reactive than their corresponding bare metal cations. An in-depth analysis of the reaction paths leading to metal oxide and sulfide species is given, including various minima, and several important transition states. All results have been compared with existing experimental and theoretical data, and earlier works covering the reaction of nickel cation with water and hydrogen sulfide to observe the trends for the group 10 transition metals.

Threshold collision-induced dissociation of hydrated magnesium: experimental and theoretical investigation of the binding energies for Mg(2+)(H2O)x complexes (x=2-10).

The sequential bond energies of Mg(2+)(H2O)x complexes, in which x=2-10, are measured by threshold collision-induced dissociation in a guided ion beam tandem mass spectrometer. From an electrospray ionization source that produces an initial distribution of Mg(2+)(H2O)x complexes in which x=7-10, complexes down to x=3 are formed by using an in-source fragmentation technique. Complexes smaller than Mg(2+)(H2O)3 cannot be formed in this source because charge separation into MgOH(+)(H2O) and H3O(+) is a lower-energy pathway than simple water loss from Mg(2+)(H2O)3. The kinetic energy dependent cross sections for dissociation of Mg(2+)(H2O)x complexes, in which x=3-10, are examined over a wide energy range to monitor all dissociation products and are modeled to obtain 0 and 298 K binding energies. Analysis of both primary and secondary water molecule losses from each sized complex provides thermochemistry for the sequential hydration energies of Mg(2+) for x=2-10 and the first experimental values for x=2-4. Additionally, the thermodynamic onsets leading to the charge-separation products from Mg(2+)(H2O)3 and Mg(2+)(H2O)4 are determined for the first time. Our experimental results for x=3-7 agree well with quantum chemical calculations performed here and previously calculated binding enthalpies, as well as previous measurements for x=6. The present values for x=7-10 are slightly lower than previous experimental results and theory, but within experimental uncertainties.

Metal-cyclopentadienyl bond energies in metallocene cations measured using threshold collision-induced dissociation mass spectrometry.

Metal-cyclopentadienyl bond dissociation energies (BDEs) were measured for seven metallocene ions (Cp(2)M(+), Cp = η(5)-cyclopentadienyl = c-C(5)H(5), M = Ti, V, Cr, Mn, Fe, Co, Ni) using threshold collision-induced dissociation (TCID) performed in a guided ion beam tandem mass spectrometer. For all seven room temperature metallocene ions, the dominant dissociation pathway is simple Cp loss from the metal. Traces of other fragment ions were also detected, such as C(10)H(10)(+), C(10)H(8)(+), C(8)H(8)(+), C(3)H(3)(+), H(2)M(+), C(3)H(3)M(+), C(6)H(6)M(+), and C(7)H(6)M(+), depending on the metal center. Statistical modeling of the Cp-loss TCID experimental data, including consideration of energy distributions, multiple collisions, and kinetic shifts, allow the extraction of 0 K [CpM(+)- Cp] BDEs. These are found to be 4.85 ± 0.15, 4.02 ± 0.14, 4.22 ± 0.13, 3.51 ± 0.12, 4.26 ± 0.15, 4.57 ± 0.15, and 3.37 ± 0.12 eV for Cp(2)Ti(+), Cp(2)V(+), Cp(2)Cr(+), Cp(2)Mn(+), Cp(2)Fe(+), Cp(2)Co(+), and Cp(2)Ni(+), respectively. The measured BDE trend is largely in line with arguments based on a simple molecular orbital picture, with the exception of the anomalous case of titanocene, most likely attributable to its bent structure. The new results presented here are compared to previous literature values and are found to provide a more complete and accurate set of thermochemistry.

Thermodynamics and mechanism of protonated asparagine decomposition.

Deamidation of the amino acid asparagine (Asn) is a primary route for spontaneous post-translational protein modification biologically and is a pH dependent process. Here we present a full molecular description of the deamidation and (H(2)O + CO) loss reactions of protonated asparagine, H(+)(Asn), by studying its collision-induced dissociation (CID) with Xe using a guided ion beam (GIB) tandem mass spectrometer. Analysis of the kinetic energy-dependent CID cross sections provides the 0 K barriers for the deamidation and (H(2)O + CO) loss reactions after accounting for unimolecular decay rates, internal energy of reactant ions, multiple ion-molecule collisions, and competition among the decay channels. Relaxed potential energy surface scans performed at the B3LYP/6-31G(d) level identify the transition-state (TS) and intermediate reaction species for these processes, structures that are further optimized at the B3LYP/6-311+G(d,p) level. Intrinsic reaction coordinate (IRC) calculations are also performed at this level on the rate-limiting reaction TSs to validate the molecular details and energy dependence of these species. Single point energies of the key optimized TSs and intermediates are calculated at B3LYP, B3P86, and MP2(full) levels using a 6-311+G(2d,2p) basis set. A number of alternative high-energy mechanisms for (H(2)O + CO) loss from H(+)(Asn) are also investigated. Combining both experimental work and quantum chemical calculations allows for a complete characterization of the elementary steps of these reactions as well as a comprehensive evaluation of the complex behavior of the deamidation reaction.

Heats of formation of Co(CO)(2)NOPR(3), R = CH(3) and C(2)H(5), and its ionic fragments.

A joint threshold photoelectron photoion coincidence spectrometry (TPEPICO) and collision-induced dissociation (CID) study on the thermochemistry of Co(CO)(2)NOPR(3), R = CH(3) (Me) and C(2)H(5) (Et), complexes is presented. Adiabatic ionization energies of 7.36 +/- 0.04 and 7.24 +/- 0.04 eV, respectively, were extracted from scans of the total ion and threshold electron signals. In the TPEPICO study, the following 0 K onsets were determined for the various fragment ions: CoCONOPMe(3)(+), 8.30 +/- 0.05 eV; CoNOPMe(3)(+), 9.11 +/- 0.05 eV; CoPMe(3)(+) 10.80 +/- 0.05 eV; CoCONOPEt(3)(+), 8.14 +/- 0.05 eV; CoNOPEt(3)(+), 8.92 +/- 0.05 eV; and CoPEt(3)(+), 10.66 +/- 0.05 eV. These onsets were combined with the Co(+)-PR(3) (R = CH(3) and C(2)H(5)) bond dissociation energies of 2.88 +/- 0.11 and 3.51 +/- 0.17 eV, obtained from the TCID experiments, to derive the heats of formation of the neutral and ionic species. Thus, the Co(CO)(2)NOPR(3) (R = CH(3) and C(2)H(5)) 0 K heats of formation were found to be -350 +/- 13 and -376 +/- 18 kJ x mol(-)(1), respectively. These heats of formation were combined with the published heat of formation of Co(CO)(3)NO to determine the substitution enthalpies of the carbonyl to phosphine substitution reactions. Room-temperature values of the heats of formation are also given using the calculated harmonic vibrational frequencies. Analysis of the TCID experimental results provides indirectly the adiabatic ionization energies of the free phosphine ligands, P(CH(3))(3) and P(C(2)H(5))(3), of 7.83 +/- 0.03 and 7.50 +/- 0.03 eV, respectively.