Efficient mapping of lignin depolymerization product pools and quantification of specific monomers through rapid GPC-HPLC-UV/VIS analysis.

BACKGROUND: Growing research on lignin depolymerization to functionalized bio-aromatics has necessitated dedicated analysis techniques. However, immense variability in molecular weight and functional groups of the depolymerization products impedes fast analysis of a large number of samples while remaining in-depth enough for catalyst screening or reaction condition optimization. While GPC-HPLC-UV/VIS has been a promising technique, up until now, the information it provides is largely qualitative. By enabling quantification of key monomeric products and through further reduction of overall analysis time, this study aims to increase the potential of GPC-HPLC-UV/VIS for fast and in-depth characterization of lignin depolymerization product pools. RESULTS: Analysis of selected samples, isolated from GPC-HPLC-UV/VIS analyses of lignin depolymerization product pools, with gas chromatography (GC) equipped with an Orbitrap high-resolution accurate mass spectrometer (Orbitrap-HR/AM-MS) is successful in identifying the main low monomeric products. Moreover, these identifications are further substantiated through GPC-HPLC-UV/VIS analysis of standards. Furthermore, straight forward quantification of these products directly within GPC-HPLC-UV/VIS is successfully developed with limits of detection ≤0.05 mmol/L, which is at least on par with more complex analysis techniques. Additionally, several different reversed phase columns are assessed to reduce 2nd dimension (2D) time and, hence, overall analysis time while maintaining the possibility for quantification. A reduction in overall analysis time of about 30% as compared to the state-of-the-art is achieved by using a YMC Triart BIO C4 column as 2D. SIGNIFICANCE: Through the enhancements introduced in this study, GPC-HPLC-UV/VIS emerges as a unique technique for the analysis of lignin depolymerization product pools, which is capable of fast yet sufficiently in-depth analysis of a large volume of samples. This capability is indispensable for catalyst screening and fine-tuning reaction conditions.

Molecular simulation of the structure of folate and antifolates at physiological conditions.

The study is focused on description of folate and several antifolates at physiological conditions. Knowledge of the molecular structure and dynamics is important for understanding their biological activity and therapeutic application. They are modelled in saline by atomistic molecular dynamics simulations and characterized in detail. In addition, quantum chemical calculations are used for determining the electronic structure of the six compounds. All molecules are highly flexible and have similar interactions with water. Specifics are found in some of their local backbone conformations, in the molecular shape, and in the electron density distribution. Most of the ligands have fairly folded geometry and prefer U- and Z-shapes. Two of them are quasi-linear. Key to the molecular shape are the bicyclic fragment, its bridge, and the charge of the terminal amino acid residue. Docking into the active site of folate receptor-α predicts a similar best binding pose for four of the ligands, which requires stretching of pterin and bending of glutamate/ornithine relative to the geometry in saline. The chemical modifications in the antifolates induce local electron density redistribution in comparison to folate, leading to increase of the positive charges of the neighboring fragments. The obtained results would help better tuning of the potential usage of the molecules in new bioactive materials, e.g., as vector-ligands for drug delivery.

Identification and computational characterization of isomers with cis and trans amide bonds in folate and its analogues.

Folate and its synthetic analogues, called antifolates, are known to have diverse bio-applications, for example as cell proliferation stimulators or anticancer drugs. Their molecular structure is important for performing the required biological activity. Since all folate-derived ligands contain a peptide-like amide bond, its configuration is one of the key components for the functional fitness of such compounds. During the modelling of folate and three of its derivatives - methotrexate, 5-methyl tetrahydrofolate, and pteroyl ornithine, we registered significant population of the cis isomers along the amide bond. The properties of the cis and trans forms of the ligands in saline are studied in detail by classical atomistic molecular dynamics and by quantum chemical methods. The calculations predict high probability for coexistence of the cis isomers for two of the ligands. The energetic instability of the cis form is explained with a σ-character admixture into the C[double bond, length as m-dash]O(π) bond, while its magnitude is attributed to the pattern of local electron density redistribution. The cis forms of all molecules have markedly slower structural dynamics than the trans ones, which might affect their behavior in vivo.