Structure of genetic diversity of Bemisia tabaci (Genn.) (Hemiptera: Aleyrodidae) populations in Brazilian crops and locations

Bemisia tabaci (Genn.) represents a complex of cryptic species that causes losses of many valuable crops. Even though there are differences in their ability to colonize hosts, transmit phytovirus and develop resistance to insecticides, the genetic differentiation of the insect populations is important for the adoption of control measures. Therefore, the genetic diversity of B. tabaci populations in economically important crops in Brazilian locations was characterized through a microsatellite analysis. Eight microsatellite markers were used for the analysis of eight populations, three in Solanum tuberosum (States of São Paulo, Minas Gerais and Bahia), two in Glycine max (States of São Paulo and Mato Grosso), one in Phaseolus vulgaris and Brassica oleracea var. acephala (States of São Paulo and Distrito Federal, respectively) and a cabbage population from Florida (USA). The number of alleles varied between two and 13 and the average value of F ST was 0.13. The population occurring in beans was genetically different, suggesting that the excessive use of insecticide or the host itself may have caused the modification of its allele frequency. The American population presented a large diversity and small differentiation compared to the Brazilian populations, especially from the Southeast, supporting the hypothesis that the B biotype was probably introduced into Brazil by the trade of plant material between the USA and the State of São Paulo. The genetic diversity found within and among the populations is geographically structured, and the insects from the central region of Brazil had superior genetic divergence when compared to the others Brazilian locations.

Structure of genetic diversity of Bemisia tabaci (Genn.) (Hemiptera: Aleyrodidae) populations in Brazilian crops and locations

Bemisia tabaci (Genn.) represents a complex of cryptic species that causes losses of many valuable crops. Even though there are differences in their ability to colonize hosts, transmit phytovirus and develop resistance to insecticides, the genetic differentiation of the insect populations is important for the adoption of control measures. Therefore, the genetic diversity of B. tabaci populations in economically important crops in Brazilian locations was characterized through a microsatellite analysis. Eight microsatellite markers were used for the analysis of eight populations, three in Solanum tuberosum (States of São Paulo, Minas Gerais and Bahia), two in Glycine max (States of São Paulo and Mato Grosso), one in Phaseolus vulgaris and Brassica oleracea var. acephala (States of São Paulo and Distrito Federal, respectively) and a cabbage population from Florida (USA). The number of alleles varied between two and 13 and the average value of F ST was 0.13. The population occurring in beans was genetically different, suggesting that the excessive use of insecticide or the host itself may have caused the modification of its allele frequency. The American population presented a large diversity and small differentiation compared to the Brazilian populations, especially from the Southeast, supporting the hypothesis that the B biotype was probably introduced into Brazil by the trade of plant material between the USA and the State of São Paulo. The genetic diversity found within and among the populations is geographically structured, and the insects from the central region of Brazil had superior genetic divergence when compared to the others Brazilian locations.

Heterogeneity of linalool chemotypes of Lippia alba (Mill.) N.E.Br., based on clonal half-sib progenies

Lippia alba (Mill.) N.E.Br. is an aromatic and medicinal shrub native to the American continent. Despite its potential as a source of essential oil for the pharmaceutical and cosmetics industries, few selection and genetic improvement studies have been carried out. The aim of this study was to provide genetic information on this species for breeding programs, showing its selection potential, by investigating clonal half-sib progenies. The following characteristics were evaluated per plant: leaf dry mass (LDM), total dry mass (TDM), leaf yield (LY), essential oil yield (EOY) and oil production (OP). Estimates were made for the several genetic parameters including absolute genetic gain at 30% selection intensity, correlations and relative contribution of additive and environmental effects to phenotypic correlation. Two experimental trials on 30 progenies were conducted: one in Campinas, state of São Paulo (SP), Brazil, with two harvests of the aerial part, and one in Monte Alegre do Sul, SP, Brazil, with only one harvest. The trials were conducted in a randomized block design consisting of subplots with three replications, each plot (progeny) consisting of 8 to 15 clonally-replicated plants with subplot harvesting. Variations were detected between progenies and harvests, as well as progeny/harvest interactions in the split plot experiment. High heritability and genetic gains were obtained at both sites for LDM, TDM and OP. The lowest variations among progenies were obtained for LY and EOY, highlighting selection problems. Negative additive genetic correlations were obtained for EOY × LDM, EOY × TDM, LY × TDM and LY × LDM. Selection for LDM resulted in increased oil production per plant (OP), even where there was a negative correlation between LDM × EOY.

Heterogeneity of linalool chemotypes of Lippia alba (Mill.) N.E.Br., based on clonal half-sib progenies

Lippia alba (Mill.) N.E.Br. is an aromatic and medicinal shrub native to the American continent. Despite its potential as a source of essential oil for the pharmaceutical and cosmetics industries, few selection and genetic improvement studies have been carried out. The aim of this study was to provide genetic information on this species for breeding programs, showing its selection potential, by investigating clonal half-sib progenies. The following characteristics were evaluated per plant: leaf dry mass (LDM), total dry mass (TDM), leaf yield (LY), essential oil yield (EOY) and oil production (OP). Estimates were made for the several genetic parameters including absolute genetic gain at 30% selection intensity, correlations and relative contribution of additive and environmental effects to phenotypic correlation. Two experimental trials on 30 progenies were conducted: one in Campinas, state of São Paulo (SP), Brazil, with two harvests of the aerial part, and one in Monte Alegre do Sul, SP, Brazil, with only one harvest. The trials were conducted in a randomized block design consisting of subplots with three replications, each plot (progeny) consisting of 8 to 15 clonally-replicated plants with subplot harvesting. Variations were detected between progenies and harvests, as well as progeny/harvest interactions in the split plot experiment. High heritability and genetic gains were obtained at both sites for LDM, TDM and OP. The lowest variations among progenies were obtained for LY and EOY, highlighting selection problems. Negative additive genetic correlations were obtained for EOY × LDM, EOY × TDM, LY × TDM and LY × LDM. Selection for LDM resulted in increased oil production per plant (OP), even where there was a negative correlation between LDM × EOY.

Performance of ginger grass (Lippia alba) for traits related to the production of essential oil

Lippia alba (Verbenaceae) is a shrub whose essential oil has important biological, pharmacological, and aromatizing properties. To reach the sustained cultivation of new species with economic potential, the present study aimed to evaluate L. alba performance for fresh leaf matter (FM), leaf dry matter (DM), virus symptoms (VS - Cucumber mosaic virus, CMV), oil yield (OY), and oil chemical composition (OC), and to evaluate DM stability and adaptability. Ten genotypes of four chemical groups (chemotypes) were evaluated in six experiments designed as randomized blocks with two plants per plot, over the whole State of São Paulo, Brazil. A 2.0 x 0.4 x 1.6 m spacing was used in Monte Alegre do Sul and Pindorama, while a 1.0 x 0.4 x 0.6 m spacing was used in Campinas, where four experiments were established under different irrigation and fertilization conditions. The genotype effect was significant (p 0.05) for all traits evaluated, with high leaf productivity of IAC-16 (citral chemotype), best OY means in the linalool and limonene/carvone chemotypes, and susceptibility of the latter chemotype to CMV. The genotype performance oscillations in the six environments were significant for FM and DM, and despite their significance for phytochemical traits (OY and OC), they were of low magnitude. No qualitative variation was detected for OC. The IAC-2 (linalool) and IAC-13 (limonene/carvone) genotypes showed high stability and wide adaptability, and are recommended to establish initial cultivations of this species. This research also indicated genetic sources to start Lippia alba genetic breeding programs.

A Lippia alba (Verbenaceae) é um arbusto produtor de óleo essencial com importantes atividades biológicas, farmacológicas e aromatizantes. Visando o cultivo sustentado de uma nova espécie com potencial econômico, os objetivos deste trabalho foram avaliar o desempenho da L. alba para massa de folha fresca (MF), massa de folha seca (MS), sintomas de vírus (SV - Cucumber mosaic virus, CMV), rendimento de óleo essencial (RE) e composição química do óleo (CQ), e avaliar a estabilidade e adaptabilidade fenotípica para o caráter MS. Dez genótipos pertencentes a quatro grupos químicos foram testados em seis experimentos instalados no estado de São Paulo, Brasil, com delineamento em blocos ao acaso e duas plantas por parcela. Em Monte Alegre do Sul e Pindorama, foi utilizado espaçamento de 2,0 x 0,4 x 1,6 m e em Campinas, foram instalados quatro experimentos 1,0 x 0,4 x 0,6 m sob condições distintas de adubação e irrigação. O efeito de genótipo foi significativo para todas as características avaliadas, revelando elevada produtividade de folhas do IAC-16 (citral), RE Yamamoto et al. superior dos quimiotipos linalol e limoneno/carvona e susceptibilidade deste último ao CMV. As oscilações no desempenho dos genótipos nos diferentes experimentos foram de baixa magnitude para os caracteres fitoquímicos (RE e CQ) e nenhuma variação qualitativa foi observada para CQ. Os genótipos IAC-2 (linalol) e IAC-13 (limoneno/carvona) apresentaram-se estáveis para MS e com ampla adaptabilidade, e são recomendados para o início do cultivo da espécie. A presente pesquisa fornece subsídios também para o início de programas de melhoramento genético em L. alba.

Performance of ginger grass (Lippia alba) for traits related to the production of essential oil

Lippia alba (Verbenaceae) is a shrub whose essential oil has important biological, pharmacological, and aromatizing properties. To reach the sustained cultivation of new species with economic potential, the present study aimed to evaluate L. alba performance for fresh leaf matter (FM), leaf dry matter (DM), virus symptoms (VS - Cucumber mosaic virus, CMV), oil yield (OY), and oil chemical composition (OC), and to evaluate DM stability and adaptability. Ten genotypes of four chemical groups (chemotypes) were evaluated in six experiments designed as randomized blocks with two plants per plot, over the whole State of São Paulo, Brazil. A 2.0 x 0.4 x 1.6 m spacing was used in Monte Alegre do Sul and Pindorama, while a 1.0 x 0.4 x 0.6 m spacing was used in Campinas, where four experiments were established under different irrigation and fertilization conditions. The genotype effect was significant (p 0.05) for all traits evaluated, with high leaf productivity of IAC-16 (citral chemotype), best OY means in the linalool and limonene/carvone chemotypes, and susceptibility of the latter chemotype to CMV. The genotype performance oscillations in the six environments were significant for FM and DM, and despite their significance for phytochemical traits (OY and OC), they were of low magnitude. No qualitative variation was detected for OC. The IAC-2 (linalool) and IAC-13 (limonene/carvone) genotypes showed high stability and wide adaptability, and are recommended to establish initial cultivations of this species. This research also indicated genetic sources to start Lippia alba genetic breeding programs.

A Lippia alba (Verbenaceae) é um arbusto produtor de óleo essencial com importantes atividades biológicas, farmacológicas e aromatizantes. Visando o cultivo sustentado de uma nova espécie com potencial econômico, os objetivos deste trabalho foram avaliar o desempenho da L. alba para massa de folha fresca (MF), massa de folha seca (MS), sintomas de vírus (SV - Cucumber mosaic virus, CMV), rendimento de óleo essencial (RE) e composição química do óleo (CQ), e avaliar a estabilidade e adaptabilidade fenotípica para o caráter MS. Dez genótipos pertencentes a quatro grupos químicos foram testados em seis experimentos instalados no estado de São Paulo, Brasil, com delineamento em blocos ao acaso e duas plantas por parcela. Em Monte Alegre do Sul e Pindorama, foi utilizado espaçamento de 2,0 x 0,4 x 1,6 m e em Campinas, foram instalados quatro experimentos 1,0 x 0,4 x 0,6 m sob condições distintas de adubação e irrigação. O efeito de genótipo foi significativo para todas as características avaliadas, revelando elevada produtividade de folhas do IAC-16 (citral), RE Yamamoto et al. superior dos quimiotipos linalol e limoneno/carvona e susceptibilidade deste último ao CMV. As oscilações no desempenho dos genótipos nos diferentes experimentos foram de baixa magnitude para os caracteres fitoquímicos (RE e CQ) e nenhuma variação qualitativa foi observada para CQ. Os genótipos IAC-2 (linalol) e IAC-13 (limoneno/carvona) apresentaram-se estáveis para MS e com ampla adaptabilidade, e são recomendados para o início do cultivo da espécie. A presente pesquisa fornece subsídios também para o início de programas de melhoramento genético em L. alba.

Genetic diversity in common bean accessions evaluated by means of morpho-agronomical and RAPD data

Germplasm banks store genotype samples, improved varieties, landraces and wild species, all generically denominated accessions. The importance of characterizing germplasm banks is based on the identification and knowledge of relevant traits for genetic improvement and ex situ germplasm conservation. Thus, the present study had as aim the evaluation of the genetic diversity among 220 accessions of a Brazilian common bean germplasm bank of the "Instituto Agronômico de Campinas" (IAC) by means of 23 morpho-agronomical descriptors and 19 RAPD loci. These accessions correspond to genotypes from the Andean and Middle American gene pool as well as from cultivars derived from common bean improvement programs. The Middle American accessions and the improved cultivars were clustered into one group, distinct from the one formed by the Andean accessions. In relation to the molecular data, 47% of the genetic similarity was detected among the Middle American accessions, and similar results were observed for the improved cultivars (50%). The Andean accessions revealed 60% of genetic similarity. The cluster constituted by the improved cultivars and the Middle American genotypes differed, basically, in tegument color. Both molecular and morpho-agronomical data sets were equally effective to quantify and organize the genetic diversity of common bean accessions. This information may be useful to direct crosses and for the proper organization of the IAC germplasm bank.

Bancos de germoplasma guardam amostras de genótipos, variedades melhoradas, crioulas e espécies selvagens, todas genericamente denominadas acessos. A importância da caracterização de bancos de germoplasma reside na identificação e no conhecimento de características relevantes para o melhoramento genético e para conservação ex situ do germoplasma. Avaliou-se a diversidade genética entre 220 acessos de feijoeiro de um banco brasileiro de germoplasma de feijoeiro localizado no IAC (Instituto Agronômico, Campinas), por meio de 23 descritores morfo-agronômicos e 19 locos de RAPD. Os acessos correspondem a genótipos do pool gênico andino e mesoamericano e também por cultivares resultantes de programas de melhoramento de feijoeiro. Os acessos mesoamericanos e as cultivares melhoradas foram agrupados em um mesmo grupo, distintamente dos acessos andinos. Com base nos dados moleculares, 47% de similaridade genética foi detectada entre acessos mesoamericanos e resultados semelhantes foram observados para as cultivares melhoradas (50%). Os andinos apresentaram 60% de similaridade genética. O cluster formado pelas cultivares melhoradas e genótipos mesoamericanos apresentou diferenças quanto à coloração do tegumento. Ambos os conjuntos de dados, moleculares e morfo-agronômicos, foram igualmente eficientes para quantificação e estruturação da diversidade genética de acessos de feijoeiro. Essas informações poderão ser utilizadas para orientação de cruzamentos e para a conservação adequada do banco de germoplasma de feijoeiro do IAC.

Genetic diversity in common bean accessions evaluated by means of morpho-agronomical and RAPD data

Germplasm banks store genotype samples, improved varieties, landraces and wild species, all generically denominated accessions. The importance of characterizing germplasm banks is based on the identification and knowledge of relevant traits for genetic improvement and ex situ germplasm conservation. Thus, the present study had as aim the evaluation of the genetic diversity among 220 accessions of a Brazilian common bean germplasm bank of the "Instituto Agronômico de Campinas" (IAC) by means of 23 morpho-agronomical descriptors and 19 RAPD loci. These accessions correspond to genotypes from the Andean and Middle American gene pool as well as from cultivars derived from common bean improvement programs. The Middle American accessions and the improved cultivars were clustered into one group, distinct from the one formed by the Andean accessions. In relation to the molecular data, 47% of the genetic similarity was detected among the Middle American accessions, and similar results were observed for the improved cultivars (50%). The Andean accessions revealed 60% of genetic similarity. The cluster constituted by the improved cultivars and the Middle American genotypes differed, basically, in tegument color. Both molecular and morpho-agronomical data sets were equally effective to quantify and organize the genetic diversity of common bean accessions. This information may be useful to direct crosses and for the proper organization of the IAC germplasm bank.

Bancos de germoplasma guardam amostras de genótipos, variedades melhoradas, crioulas e espécies selvagens, todas genericamente denominadas acessos. A importância da caracterização de bancos de germoplasma reside na identificação e no conhecimento de características relevantes para o melhoramento genético e para conservação ex situ do germoplasma. Avaliou-se a diversidade genética entre 220 acessos de feijoeiro de um banco brasileiro de germoplasma de feijoeiro localizado no IAC (Instituto Agronômico, Campinas), por meio de 23 descritores morfo-agronômicos e 19 locos de RAPD. Os acessos correspondem a genótipos do pool gênico andino e mesoamericano e também por cultivares resultantes de programas de melhoramento de feijoeiro. Os acessos mesoamericanos e as cultivares melhoradas foram agrupados em um mesmo grupo, distintamente dos acessos andinos. Com base nos dados moleculares, 47% de similaridade genética foi detectada entre acessos mesoamericanos e resultados semelhantes foram observados para as cultivares melhoradas (50%). Os andinos apresentaram 60% de similaridade genética. O cluster formado pelas cultivares melhoradas e genótipos mesoamericanos apresentou diferenças quanto à coloração do tegumento. Ambos os conjuntos de dados, moleculares e morfo-agronômicos, foram igualmente eficientes para quantificação e estruturação da diversidade genética de acessos de feijoeiro. Essas informações poderão ser utilizadas para orientação de cruzamentos e para a conservação adequada do banco de germoplasma de feijoeiro do IAC.

Pilocarpine content and molecular diversity in jaborandi

Pilocarpine is an imidazol alkaloid exclusively found in Pilocarpus genus and P. microphyllus accumulates its highest content in the leaves. There is no report in the literature on the variability of the pilocarpine content in this genus. A population of 20 genotypes of P. microphyllus from the state of Maranhão, Brazil, was analyzed for Random Amplification of Polymorphic DNA (RAPD) markers and pilocarpine content. Although it was not possible to establish any correlation between these features, the absence or presence of some markers could indicate in some genotypes a possible association with the content of the alkaloid.

Pilocarpina é um alcalóide imidazólico encontrado exclusivamente em plantas do gênero Pilocarpus, sendo que as folhas de P. microphyllus acumulam o maior conteúdo deste alcalóide. Não há na literatura nenhum relato sobre a variabilidade do conteúdo de pilocarpina nesse gênero. Uma população de 20 plantas de P. microphyllus do estado do Maranhão, Brasil, foi analisada por marcadores Aplicação de DNA polimórfico randomica (RAPD) e quanto ao conteúdo de pilocarpina. Apesar de não ter sido possível estabelecer uma associação entre as variáveis estudadas, a ausência ou a presença de alguns loci marcadores em certos genótipos puderam ser associados ao teor do alcalóide.

Pilocarpine content and molecular diversity in jaborandi

Pilocarpine is an imidazol alkaloid exclusively found in Pilocarpus genus and P. microphyllus accumulates its highest content in the leaves. There is no report in the literature on the variability of the pilocarpine content in this genus. A population of 20 genotypes of P. microphyllus from the state of Maranhão, Brazil, was analyzed for Random Amplification of Polymorphic DNA (RAPD) markers and pilocarpine content. Although it was not possible to establish any correlation between these features, the absence or presence of some markers could indicate in some genotypes a possible association with the content of the alkaloid.

Pilocarpina é um alcalóide imidazólico encontrado exclusivamente em plantas do gênero Pilocarpus, sendo que as folhas de P. microphyllus acumulam o maior conteúdo deste alcalóide. Não há na literatura nenhum relato sobre a variabilidade do conteúdo de pilocarpina nesse gênero. Uma população de 20 plantas de P. microphyllus do estado do Maranhão, Brasil, foi analisada por marcadores Aplicação de DNA polimórfico randomica (RAPD) e quanto ao conteúdo de pilocarpina. Apesar de não ter sido possível estabelecer uma associação entre as variáveis estudadas, a ausência ou a presença de alguns loci marcadores em certos genótipos puderam ser associados ao teor do alcalóide.

Genetic diversity of cultivated Coffea arabica inbred lines assessed by RAPD, AFLP and SSR marker systems

One of the greatest problems in Coffea arabica breeding is identifying precisely any inbred line, based only on botanical and agronomical descriptors, because of the reduced genetic variability of the species, close pedigree origin, which results in small phenotypic variation. Recently, molecular markers have been used for plant germplasm characterization and identification in several commercial species. This work evaluates the reliability of three marker systems: RAPD, AFLP and SSR, to characterize the genetic variability of commercially-used Coffea inbred lines developed by the Instituto Agronômico (IAC), and their potential for cultivar identification. All methods identified polymorphisms among the cultivars. The genetic diversity recognized by the methods is very similar, although is very narrow. RAPD and SSR marker systems grouped more efficiently the evaluated cultivars according to parental origin. None of the methods allowed inbred line identification. Therefore for varietal protection, it would be necessary using a combination of botanical, agronomical and molecular markers descriptors for precise cultivar identification.

A identificação de linhagens de Coffea arabica a partir de descritores botânicos e agronômicos é um problema para o desenvolvimento de cultivares. Basicamente, a limitada variação fenotípica observada em cultivares é o resultado de uma estreita variabilidade genética em C. arabica associada com uma origem genealógica próxima. Recentemente, os uso de marcadores moleculares tem contribuído para a caracterização e identificação de várias espécies de interesse comercial. O objetivo deste trabalho foi comparar a confiabilidade de três tipos de marcadores moleculares, RAPD, AFLP e SSR, para a caracterização da variabilidade genética e uma possível identificação de linhagens comerciais de Coffea desenvolvidas pelo IAC. Os métodos avaliados permitiram identificar polimorfismos entre cultivares. A variabilidade genética detectada por eles é muito semelhante, ainda que reduzida. Marcadores do tipo RAPD e SSR foram mais eficientes em análises de parentesco, e o agrupamento das linhagens correspondeu à sua origem genealógica. No entanto, nenhum dos métodos testados permitiu a identificação individual de linhagens. Neste caso, a utilização conjunta de descritores botânicos, agronômicos e marcadores moleculares é recomendada para a identificação precisa de linhagens, visando processos de proteção legal de cultivares de Coffea.

Genetic diversity of cultivated Coffea arabica inbred lines assessed by RAPD, AFLP and SSR marker systems

One of the greatest problems in Coffea arabica breeding is identifying precisely any inbred line, based only on botanical and agronomical descriptors, because of the reduced genetic variability of the species, close pedigree origin, which results in small phenotypic variation. Recently, molecular markers have been used for plant germplasm characterization and identification in several commercial species. This work evaluates the reliability of three marker systems: RAPD, AFLP and SSR, to characterize the genetic variability of commercially-used Coffea inbred lines developed by the Instituto Agronômico (IAC), and their potential for cultivar identification. All methods identified polymorphisms among the cultivars. The genetic diversity recognized by the methods is very similar, although is very narrow. RAPD and SSR marker systems grouped more efficiently the evaluated cultivars according to parental origin. None of the methods allowed inbred line identification. Therefore for varietal protection, it would be necessary using a combination of botanical, agronomical and molecular markers descriptors for precise cultivar identification.

A identificação de linhagens de Coffea arabica a partir de descritores botânicos e agronômicos é um problema para o desenvolvimento de cultivares. Basicamente, a limitada variação fenotípica observada em cultivares é o resultado de uma estreita variabilidade genética em C. arabica associada com uma origem genealógica próxima. Recentemente, os uso de marcadores moleculares tem contribuído para a caracterização e identificação de várias espécies de interesse comercial. O objetivo deste trabalho foi comparar a confiabilidade de três tipos de marcadores moleculares, RAPD, AFLP e SSR, para a caracterização da variabilidade genética e uma possível identificação de linhagens comerciais de Coffea desenvolvidas pelo IAC. Os métodos avaliados permitiram identificar polimorfismos entre cultivares. A variabilidade genética detectada por eles é muito semelhante, ainda que reduzida. Marcadores do tipo RAPD e SSR foram mais eficientes em análises de parentesco, e o agrupamento das linhagens correspondeu à sua origem genealógica. No entanto, nenhum dos métodos testados permitiu a identificação individual de linhagens. Neste caso, a utilização conjunta de descritores botânicos, agronômicos e marcadores moleculares é recomendada para a identificação precisa de linhagens, visando processos de proteção legal de cultivares de Coffea.