Incorporating evolutionary and threat processes into crop wild relatives conservation.

Crop wild relatives (CWR) intra- and interspecific diversity is essential for crop breeding and food security. However, intraspecific genetic diversity, which is central given the idiosyncratic threats to species in landscapes, is usually not considered in planning frameworks. Here, we introduce an approach to develop proxies of genetic differentiation to identify conservation areas, applying systematic conservation planning tools that produce hierarchical prioritizations of the landscape. It accounts for: (i) evolutionary processes, including historical and environmental drivers of genetic diversity, and (ii) threat processes, considering taxa-specific tolerance to human-modified habitats, and their extinction risk status. Our analyses can be used as inputs for developing national action plans for the conservation and use of CWR. Our results also inform public policy to mitigate threat processes to CWR (like crops living modified organisms or agriculture subsidies), and could advise future research (e.g. for potential germplasm collecting). Although we focus on Mesoamerican CWR within Mexico, our methodology offers opportunities to effectively guide conservation and monitoring strategies to safeguard the evolutionary resilience of any taxa, including in regions of complex evolutionary histories and mosaic landscapes.

Gamma radiation on seeds of natal grass [Melinis repens (Willd.) Zizka] induced plant's morphological and nutritional variability.

Induced mutagenesis through gamma radiation generates structural and chemical changes in plants. This study evaluated the morphological and nutritional variability of natal grass [Melinis repens (Willd.) Zizka] plants produced from seed irradiated with gamma radiation. Natal grass seed was collected from wild populations in the state of Chihuahua, Mexico. The seed was exposed to a source of Co60. The radiation doses were: 0, 10, 50, 100, 150, 200, 250, 300 and 350 Gray (Gy). Sixty-six first generation mutant genotypes (M1), produced from irradiated seed, and nine non-mutant genotypes (M0), developed from non-irradiated seed (0 Gy), were evaluated. For the morphological characterization, 18 variables were measured on the plants when they were at the reproductive stage. The nutritional analysis was performed on the M0, as well as on a group of plants from the M1, which resulted morphologically different (p <0.005) from the rest. The differenced M1 plants were classified as promising mutant genotypes (M1p). Results showed that variability was induced in the M1p. These individuals presented morphological differences in leaf weight-tillering weight ratio and foliage height, compared to the rest of the plants (p <0.001). The M1p 250-10 genotype presented the highest (p <0.001) crude protein and the lowest (p <0.001) lignin contents. Gamma radiation in the seed of natal grass induced morphological and nutritional variability. With that, promising mutant genotypes, with desirable morphological and nutritional attributes, were identified.

Unique haplotypes of cacao trees as revealed by trnH-psbA chloroplast DNA.

Cacao trees have been cultivated in Mesoamerica for at least 4,000 years. In this study, we analyzed sequence variation in the chloroplast DNA trnH-psbA intergenic spacer from 28 cacao trees from different farms in the Soconusco region in southern Mexico. Genetic relationships were established by two analysis approaches based on geographic origin (five populations) and genetic origin (based on a previous study). We identified six polymorphic sites, including five insertion/deletion (indels) types and one transversion. The overall nucleotide diversity was low for both approaches (geographic = 0.0032 and genetic = 0.0038). Conversely, we obtained moderate to high haplotype diversity (0.66 and 0.80) with 10 and 12 haplotypes, respectively. The common haplotype (H1) for both networks included cacao trees from all geographic locations (geographic approach) and four genetic groups (genetic approach). This common haplotype (ancient) derived a set of intermediate haplotypes and singletons interconnected by one or two mutational steps, which suggested directional selection and event purification from the expansion of narrow populations. Cacao trees from Soconusco region were grouped into one cluster without any evidence of subclustering based on AMOVA (F ST = 0) and SAMOVA (F ST = 0.04393) results. One population (Mazatán) showed a high haplotype frequency; thus, this population could be considered an important reservoir of genetic material. The indels located in the trnH-psbA intergenic spacer of cacao trees could be useful as markers for the development of DNA barcoding.