ALES: cell lineage analysis and mapping of developmental events.

MOTIVATION: Animals build their bodies by altering the fates of cells. The way in which they do so is reflected in the topology of cell lineages and the fates of terminal cells. Cell lineages should, therefore, contain information about the molecular events that determined them. Here we introduce new tools for visualizing, manipulating, and extracting the information contained in cell lineages. Our tools enable us to analyze very large cell lineages, where previously analyses have only been carried out on cell lineages no larger than a few dozen cells. RESULTS: Ales (A Lineage Evaluation System) allows the display, evaluation and comparison of cell lineages with the aim of identifying molecular and cellular events underlying development. Ales introduces a series of algorithms that locate putative developmental events. The distribution of these predicted events can then be compared to gene expression patterns or other cellular characteristics. In addition, artificial lineages can be generated, or existing lineages modified, according to a range of models, in order to test hypotheses about lineage evolution. AVAILABILITY: The program can run on any operating system with a compliant Java 2 environment. Ales is free for academic use and can be downloaded from http://mbi.dkfz-heidelberg.de/mbi/research/cellsim/ales.

Temperature modulates epidermal cell size in Drosophila melanogaster.

Most ectotherms show increased body size at maturity when reared under colder temperatures. In principle, temperature could produce this outcome by influencing growth, proliferation and/or death of epidermal cells. Here we investigated the effects of rearing temperature on the cell size and cell number in the wing blade, the basitarsus of the leg and the cornea of the eye of Drosophila melanogaster from two populations at opposite ends of a South American latitudinal cline. We found that, in both strains of D. melanogaster and in both sexes, a decrease in rearing temperature increases the size of the wings, legs and eyes through an effect on epidermal cell size, with no significant change in cell number. Our results indicate that temperature has a consistent effect on cell size in the Drosophila epidermis and this may also apply to other cell types. In contrast, the evolutionary effects of temperature on the different organs are not consistent. We discuss our findings in the context of growth control in Drosophila.