Purification and spectroscopic studies on catechol oxidase from lemon balm (Melissa officinalis).

A catechol oxidase from lemon balm (Melissa officinalis) moCO which only catalyzes the oxidation of catechols to quinones without hydroxylating tyrosine was purified. The molecular mass of the M. officinalis enzyme of 39,370 Da was obtained by MALDI mass spectrometry and the isoelectric point was determined to be 3.4. Addition of 2 eq. H(2)O(2) to the enzyme leads to oxy catechol oxidase. In the UV/Vis spectrum two new absorption bands occur at 343 nm (ε=8510 M(-1)cm(-1)) and 580 nm (ε=580 M(-1)cm(-1)) due to O(2)(2-)Cu (II) charge transfer transitions in accordance with the oxy forms of other type 3 copper proteins. The N-terminal sequence has been determined by Edman degradation to NPVQAPELDKCGTAT, exhibiting a proline at the second and sixth position conserved in other polyphenol oxidases.

Hydrolase-like properties of a cofactor-independent dioxygenase.

Mechanistic promiscuity: The (2-alkyl)-3-hydroxy-4(1H)-quinolone-cleaving dioxygenase Hod has an α/ß-hydrolase fold and a Ser/His/Asp triad in its active site. Isatoic anhydride, a suicide substrate of serine hydrolases, inactivates Hod by covalent modification of the active-site serine, thus indicating that the α/ß-hydrolase fold can accommodate dioxygenase chemistry without completely abandoning hydrolase-like properties.

Dioxygenase-mediated quenching of quinolone-dependent quorum sensing in Pseudomonas aeruginosa.

2-Heptyl-3-hydroxy-4(1H)-quinolone (PQS) is a quorum-sensing signal molecule used by Pseudomonas aeruginosa. The structural similarity between 3-hydroxy-2-methyl-4(1H)-quinolone, the natural substrate for the 2,4-dioxygenase, Hod, and PQS prompted us to investigate whether Hod quenched PQS signaling. Hod is capable of catalyzing the conversion of PQS to N-octanoylanthranilic acid and carbon monoxide. In P. aeruginosa PAO1 cultures, exogenously supplied Hod protein reduced expression of the PQS biosynthetic gene pqsA, expression of the PQS-regulated virulence determinants lectin A, pyocyanin, and rhamnolipids, and virulence in planta. However, the proteolytic cleavage of Hod by extracellular proteases, competitive inhibition by the PQS precursor 2-heptyl-4(1H)-quinolone, and PQS binding to rhamnolipids reduced the efficiency of Hod as a quorum-quenching agent. Nevertheless, these data indicate that enzyme-mediated PQS inactivation has potential as an antivirulence strategy against P. aeruginosa.

Reevaluation of the kinetics of polynuclear mimics for manganese catalases.

Considerable effort has been expended in order to understand the mechanism of manganese catalases and to develop functional mimics for these enzymes. For many years, the most efficient reactivity mimic was [MnIVsalpn(mu-O)]2 [H2salpn = 1,3-bis(salicylideneiminato)propane], a compound that cycles between the MnIV2 and MnIII2 oxidation levels instead of the MnII2 and MnIII2 oxidation states used by the enzyme, with kcat = 250 s(-1) and kcat/KM = 1000 M(-1) s(-1). Recently, a truly exceptional high value of kcat was reported for the complex [Mn(bpia)(mu-OAc)]22+ [bpia = bis(picolyl)(N-methylimidazol-2-yl)amine]. On the basis of a calculated kcat value of 1100 s(-1) and an efficiency kcat/KM of 34 000 M(-1) s(-1), this complex has been suggested to represent a significant breakthrough in catalytic efficiencies of manganese catalase mimics. However, a plot of ri/[cat]T vs [H2O2]0, where the saturation value approaches 1.5 s(-1), is inconsistent with the 1100 s(-1) value tabulated for kcat. Similar discrepancies are observed for two other families of manganese complexes containing either a Mn2(mu-OPh)22+ core and different substituted tripodal ligands or complexes of methyl and ethyl salicylimidate, with an Mn2(mu-OPh)24+ core. Reevaluation of the kinetic parameters for these three systems reveals that the originally reported values were overestimated by a factor of approximately 1000 for both kcat and kcat/KM. We discuss the origin of the discrepancy between the previously published kinetic parameters and the newly derived values. Furthermore, we provide a short analysis of the existing manganese catalase mimics in an effort to provide sound directions for future investigations in this field.

Purification, cloning and characterization of a novel peroxidase isozyme from sweetpotatoes (Ipomoea batatas).

An anionic peroxidase from sweetpotato tubers is purified and characterized. The isozyme ibPrx15 is purified to homogeneity by affinity chromatography using a concanavalin A column. The isoelectric point was determined to pI 4.9. MALDI-MS detected a singly charged molecule with a mass of 42029 Da. Absorption spectra of ibPrx15 compounds I, II and III were obtained after treatment with H(2)O(2) at room temperature. Comparative data of ibPrx15 on substrate specificity to tobacco anionic peroxidase (TOP) and horseradish peroxidase (HRP) reveal similar specific activity towards a series of conventional substrates except for iodide, which is a two-electron donor interacting directly with the compound I derivative in the catalytic cycle. ibPrx15 exhibits a high specific activity towards iodide about 10(3)-fold to that of tobacco peroxidase. The amino acid sequence of the main isozyme ibPrx15 was determined by Edman degradation and by sequencing the amplified cDNA fragments. ibPrx15 has 86% identity to another Ipomoea sequence ibPrx05 and 72% identity with a sequence from Populus trichocarpa (PtPrx72).