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1.
J Chem Theory Comput ; 2024 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-38967621

RESUMO

We introduce a novel computational framework for excited-state molecular quantum dynamics simulations driven by quantum-computing-based electronic-structure calculations. This framework leverages the fewest-switches surface-hopping method for simulating the nuclear dynamics and calculates the required excited-state transition properties with different flavors of the quantum subspace expansion and quantum equation-of-motion algorithms. We apply our method to simulate the collision reaction between a hydrogen atom and a hydrogen molecule. For this system, we critically compare the accuracy and efficiency of different quantum subspace expansion and equation-of-motion algorithms and show that only methods that can capture both weak and strong electron correlation effects can properly describe the nonadiabatic effects that tune the reactive event.

2.
J Phys Chem Lett ; 15(27): 6958-6965, 2024 Jul 11.
Artigo em Inglês | MEDLINE | ID: mdl-38940632

RESUMO

We introduce a quantum information analysis of vibrational wave functions to understand complex vibrational spectra of molecules with strong anharmonic couplings and vibrational resonances. For this purpose, we define one- and two-modal entropies to guide the identification of strongly coupled vibrational modes and to characterize correlations within modal basis sets. We evaluate these descriptors for multiconfigurational vibrational wave functions which we calculate with the n-mode vibrational density matrix renormalization group algorithm. Based on the quantum information measures, we present a vibrational entanglement analysis of the vibrational ground and excited states of CO2, which display strong anharmonic effects due to the symmetry-induced and accidental (near-) degeneracies. We investigate the entanglement signature of the Fermi resonance and discuss the maximally entangled state arising from the two degenerate bending modes.

3.
Science ; 384(6696): 677-682, 2024 May 10.
Artigo em Inglês | MEDLINE | ID: mdl-38723091

RESUMO

Molecular rings of N carbon atoms (cyclo[N]carbons, or CN) are excellent benchmarking systems for testing quantum chemical theoretical methods and valuable precursors to other carbon-rich materials. Odd-N cyclocarbons, which have been elusive to date, are predicted to be even less stable than even-N cyclocarbons. We report the on-surface synthesis of cyclo[13]carbon, C13, by manipulation of decachlorofluorene with a scanning probe microscope tip. We elucidated the properties of C13 by experiment and theoretical modeling. C13 adopts an open-shell configuration with a triplet ground state and a kinked geometry, which shows different extents of distortion and carbene localization depending on the molecular environment. Moreover, we prepared and characterized the C13 dimer, cyclo[26]carbon, demonstrating the potential of cyclocarbons and their precursors as building blocks for carbon allotropes.

4.
J Chem Theory Comput ; 19(24): 9329-9343, 2023 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-38060309

RESUMO

We present a novel formulation of the vibrational density matrix renormalization group (vDMRG) algorithm tailored to strongly anharmonic molecules described by general, high-dimensional model representations of potential energy surfaces. For this purpose, we extend the vDMRG framework to support vibrational Hamiltonians expressed in the so-called n-mode second-quantization formalism. The resulting n-mode vDMRG method offers full flexibility with respect to both the functional form of the PES and the choice of the single-particle basis set. We leverage this framework to apply, for the first time, vDMRG based on an anharmonic modal basis set optimized with the vibrational self-consistent field algorithm on an on-the-fly constructed PES. We also extend the n-mode vDMRG framework to include excited-state-targeting algorithms in order to efficiently calculate anharmonic transition frequencies. We demonstrate the capabilities of our novel n-mode vDMRG framework for methyloxirane, a challenging molecule with 24 coupled vibrational modes.

5.
J Phys Chem A ; 127(42): 8943-8954, 2023 Oct 26.
Artigo em Inglês | MEDLINE | ID: mdl-37831620

RESUMO

We present a symmetry projection technique for enforcing rotational and parity symmetries in nuclear-electronic Hartree-Fock wave functions, which treat electrons and nuclei on equal footing. The molecular Hamiltonian obeys rotational and parity inversion symmetries, which are, however, broken by expanding in Gaussian basis sets that are fixed in space. We generate a trial wave function with the correct symmetry properties by projecting the wave function onto representations of the three-dimensional rotation group, i.e., the special orthogonal group in three dimensions SO(3). As a consequence, the wave function becomes an eigenfunction of the angular momentum operator which (i) eliminates the contamination of the ground-state wave function by highly excited rotational states arising from the broken rotational symmetry and (ii) enables the targeting of specific rotational states of the molecule. We demonstrate the efficiency of the symmetry projection technique by calculating the energies of the low-lying rotational states of the H2 and H3+ molecules.

6.
Chembiochem ; 24(13): e202300120, 2023 07 03.
Artigo em Inglês | MEDLINE | ID: mdl-37151197

RESUMO

Molecular biology and biochemistry interpret microscopic processes in the living world in terms of molecular structures and their interactions, which are quantum mechanical by their very nature. Whereas the theoretical foundations of these interactions are well established, the computational solution of the relevant quantum mechanical equations is very hard. However, much of molecular function in biology can be understood in terms of classical mechanics, where the interactions of electrons and nuclei have been mapped onto effective classical surrogate potentials that model the interaction of atoms or even larger entities. The simple mathematical structure of these potentials offers huge computational advantages; however, this comes at the cost that all quantum correlations and the rigorous many-particle nature of the interactions are omitted. In this work, we discuss how quantum computation may advance the practical usefulness of the quantum foundations of molecular biology by offering computational advantages for simulations of biomolecules. We not only discuss typical quantum mechanical problems of the electronic structure of biomolecules in this context, but also consider the dominating classical problems (such as protein folding and drug design) as well as data-driven approaches of bioinformatics and the degree to which they might become amenable to quantum simulation and quantum computation.


Assuntos
Metodologias Computacionais , Simulação de Dinâmica Molecular , Teoria Quântica , Biologia Molecular , Estrutura Molecular
7.
J Chem Theory Comput ; 19(20): 6933-6991, 2023 Oct 24.
Artigo em Inglês | MEDLINE | ID: mdl-37216210

RESUMO

The developments of the open-source OpenMolcas chemistry software environment since spring 2020 are described, with a focus on novel functionalities accessible in the stable branch of the package or via interfaces with other packages. These developments span a wide range of topics in computational chemistry and are presented in thematic sections: electronic structure theory, electronic spectroscopy simulations, analytic gradients and molecular structure optimizations, ab initio molecular dynamics, and other new features. This report offers an overview of the chemical phenomena and processes OpenMolcas can address, while showing that OpenMolcas is an attractive platform for state-of-the-art atomistic computer simulations.

8.
J Chem Theory Comput ; 19(3): 856-873, 2023 Feb 14.
Artigo em Inglês | MEDLINE | ID: mdl-36701300

RESUMO

This work presents a general framework for deriving exact and approximate Newton self-consistent field (SCF) orbital optimization algorithms by leveraging concepts borrowed from differential geometry. Within this framework, we extend the augmented Roothaan-Hall (ARH) algorithm to unrestricted electronic and nuclear-electronic calculations. We demonstrate that ARH yields an excellent compromise between stability and computational cost for SCF problems that are hard to converge with conventional first-order optimization strategies. In the electronic case, we show that ARH overcomes the slow convergence of orbitals in strongly correlated molecules with the example of several iron-sulfur clusters. For nuclear-electronic calculations, ARH significantly enhances the convergence already for small molecules, as demonstrated for a series of protonated water clusters.

9.
J Chem Theory Comput ; 18(7): 4203-4217, 2022 Jul 12.
Artigo em Inglês | MEDLINE | ID: mdl-35666238

RESUMO

In this work, we present the first implementation of the transcorrelated electronic Hamiltonian in an optimization procedure for matrix product states by the density matrix renormalization group (DMRG) algorithm. In the transcorrelation ansatz, the electronic Hamiltonian is similarity-transformed with a Jastrow factor to describe the cusp in the wave function at electron-electron coalescence. As a result, the wave function is easier to approximate accurately with the conventional expansion in terms of one-particle basis functions and Slater determinants. The transcorrelated Hamiltonian in first quantization comprises up to three-body interactions, which we deal with in the standard way by applying robust density fitting to two- and three-body integrals entering the second-quantized representation of this Hamiltonian. The lack of hermiticity of the transcorrelated Hamiltonian is taken care of along the lines of the first work on transcorrelated DMRG [ J. Chem. Phys. 2020, 153, 164115] by encoding it as a matrix product operator and optimizing the corresponding ground state wave function with imaginary-time time-dependent DMRG. We demonstrate our quantum chemical transcorrelated DMRG approach at the example of several atoms and first-row diatomic molecules. We show that transcorrelation improves the convergence rate to the complete basis set limit in comparison to conventional DMRG. Moreover, we study extensions of our approach that aim at reducing the cost of handling the matrix product operator representation of the transcorrelated Hamiltonian.

10.
J Chem Theory Comput ; 18(1): 234-250, 2022 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-34978441

RESUMO

We recently introduced [J. Chem. Phys. 2020, 152, 204103] the nuclear-electronic all-particle density matrix renormalization group (NEAP-DMRG) method to solve the molecular Schrödinger equation, based on a stochastically optimized orbital basis, without invoking the Born-Oppenheimer approximation. In this work, we combine the DMRG method with the nuclear-electronic Hartree-Fock (NEHF-DMRG) approach, treating nuclei and electrons on the same footing. Inter- and intraspecies correlations are described within the DMRG method without truncating the excitation degree of the full configuration interaction wave function. We extend the concept of orbital entanglement and mutual information to nuclear-electronic wave functions and demonstrate that they are reliable metrics to detect strong correlation effects. We apply the NEHF-DMRG method to the HeHHe+ molecular ion, to obtain accurate proton densities, ground-state total energies, and vibrational transition frequencies by comparison with state-of-the-art data obtained with grid-based approaches and modern configuration interaction methods. For HCN, we improve on the accuracy of the latter approaches with respect to both the ground-state absolute energy and proton density, which is a major challenge for multireference nuclear-electronic state-of-the-art methods.

11.
J Chem Theory Comput ; 18(1): 415-430, 2022 Jan 11.
Artigo em Inglês | MEDLINE | ID: mdl-34914392

RESUMO

We introduce DMRG[FEAST], a new method for optimizing excited-state many-body wave functions with the density matrix renormalization group (DMRG) algorithm. Our approach applies the FEAST algorithm, originally designed for large-scale diagonalization problems, to matrix product state wave functions. We show that DMRG[FEAST] enables the stable optimization of both low- and high-energy eigenstates, therefore overcoming the limitations of state-of-the-art excited-state DMRG algorithms. We demonstrate the reliability of DMRG[FEAST] by calculating anharmonic vibrational excitation energies of molecules with up to 30 fully coupled degrees of freedom.

12.
Acc Chem Res ; 55(1): 35-43, 2022 01 04.
Artigo em Inglês | MEDLINE | ID: mdl-34918903

RESUMO

Quantum mechanical methods have been well-established for the elucidation of reaction paths of chemical processes and for the explicit dynamics of molecular systems. While they are usually deployed in routine manual calculations on reactions for which some insights are already available (typically from experiment), new algorithms and continuously increasing capabilities of modern computer hardware allow for exploratory open-ended computational campaigns that are unbiased and therefore enable unexpected discoveries. Highly efficient and even automated procedures facilitate systematic approaches toward the exploration of uncharted territory in molecular transformations and dynamics. In this work, we elaborate on such explorative approaches that range from reaction network explorations with (stationary) quantum chemical methods to explorative molecular dynamics and migrant wave packet dynamics. The focus is on recent developments that cover the following strategies. (i) Pruning search options for elementary reaction steps by heuristic rules based on the first-principles of quantum mechanics: Rules are required for reducing the combinatorial explosion of potentially reactive atom pairings, and rooting them in concepts derived from the electronic wave function makes them applicable to any molecular system. (ii) Enforcing reactive events by external biases: Inducing a reaction requires constraints that steer and direct elementary-step searches, which can be formulated in terms of forces, velocities, or supplementary potentials. (iii) Manual steering facilitated by interactive quantum mechanics: As ultrafast quantum chemical methods allow for real-time manual interactions with molecular systems, human-intuition-guided paths can be easily explored with suitable human-machine interfaces. (iv) New approaches for transition-state optimization with continuous curve representations can provide stable schemes to be driven in an automated way by allowing for an efficient tuning of the curve's parameters (instead of a manipulation of a collection of structures along the path), and (v) reactive molecular dynamics and direct wave packet propagation exploit the equations of motion of an underlying mechanical theory (usually, classical Newtonian mechanics or Schrödinger quantum mechanics). Explorative approaches are likely to replace the current state of the art in computational chemistry, because they reduce the human effort to be invested in reaction path elucidations, they are less prone to errors and bias-free, and they cover more extensive regions of the relevant configuration space. As a result, computational investigations that rely on these techniques are more likely to deliver surprising discoveries.

13.
J Chem Theory Comput ; 17(12): 7477-7485, 2021 Dec 14.
Artigo em Inglês | MEDLINE | ID: mdl-34860525

RESUMO

We present an approximation to the state-interaction approach for matrix product state (MPS) wave functions (MPSSI) in a nonorthogonal molecular orbital basis, first presented by Knecht et al. [J. Chem. Theory Comput., 2016, 28, 5881], that allows for a significant reduction of the computational cost without significantly compromising its accuracy. The approximation is well-suited if the molecular orbital basis is close to orthogonality, and its reliability may be estimated a priori with a single numerical parameter. For an example of a platinum azide complex, our approximation offers up to 63-fold reduction in computational time compared to the original method for wave function overlaps and spin-orbit couplings, while still maintaining numerical accuracy.

14.
J Chem Theory Comput ; 17(6): 3320-3334, 2021 Jun 08.
Artigo em Inglês | MEDLINE | ID: mdl-34043347

RESUMO

In this work, we simulate the electron dynamics in molecular systems with the time-dependent density matrix renormalization group (TD-DMRG) algorithm. We leverage the generality of the so-called tangent-space TD-DMRG formulation and design a computational framework in which the dynamics is driven by the exact nonrelativistic electronic Hamiltonian. We show that by parametrizing the wave function as a matrix product state, we can accurately simulate the dynamics of systems including up to 20 electrons and 32 orbitals. We apply the TD-DMRG algorithm to three problems that are hardly targeted by time-independent methods: the calculation of molecular (hyper)polarizabilities, the simulation of electronic absorption spectra, and the study of ultrafast ionization dynamics.

15.
J Chem Phys ; 153(16): 164115, 2020 Oct 28.
Artigo em Inglês | MEDLINE | ID: mdl-33138430

RESUMO

We introduce the transcorrelated Density Matrix Renormalization Group (tcDMRG) theory for the efficient approximation of the energy for strongly correlated systems. tcDMRG encodes the wave function as a product of a fixed Jastrow or Gutzwiller correlator and a matrix product state. The latter is optimized by applying the imaginary-time variant of time-dependent (TD) DMRG to the non-Hermitian transcorrelated Hamiltonian. We demonstrate the efficiency of tcDMRG with the example of the two-dimensional Fermi-Hubbard Hamiltonian, a notoriously difficult target for the DMRG algorithm, for different sizes, occupation numbers, and interaction strengths. We demonstrate fast energy convergence of tcDMRG, which indicates that tcDMRG could increase the efficiency of standard DMRG beyond quasi-monodimensional systems and provides a generally powerful approach toward the dynamic correlation problem of DMRG.

16.
Chem Sci ; 11(26): 6842-6855, 2020 Jul 14.
Artigo em Inglês | MEDLINE | ID: mdl-32874524

RESUMO

We introduce a framework for the calculation of ground and excited state energies of bosonic systems suitable for near-term quantum devices and apply it to molecular vibrational anharmonic Hamiltonians. Our method supports generic reference modal bases and Hamiltonian representations, including the ones that are routinely used in classical vibrational structure calculations. We test different parametrizations of the vibrational wavefunction, which can be encoded in quantum hardware, based either on heuristic circuits or on the bosonic Unitary Coupled Cluster Ansatz. In particular, we define a novel compact heuristic circuit and demonstrate that it provides a good compromise in terms of circuit depth, optimization costs, and accuracy. We evaluate the requirements, number of qubits and circuit depth, for the calculation of vibrational energies on quantum hardware and compare them with state-of-the-art classical vibrational structure algorithms for molecules with up to seven atoms.

17.
J Chem Theory Comput ; 16(8): 5218-5226, 2020 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-32667793

RESUMO

The UPS spectra of six hydrocarbon cage compounds have been investigated by a Green-function approach in conjunction with a full harmonic treatment of vibrational modulation effects. The remarkable agreement with experimental results points out the reliability of the proposed computational approach and the strong interplay of stereoelectronic and vibrational effects in tuning the overall spectra.

18.
J Chem Phys ; 152(20): 204103, 2020 May 29.
Artigo em Inglês | MEDLINE | ID: mdl-32486651

RESUMO

We introduce the Nuclear-Electronic All-Particle Density Matrix Renormalization Group (NEAP-DMRG) method for solving the time-independent Schrödinger equation simultaneously for electrons and other quantum species. In contrast to the already existing multicomponent approaches, in this work, we construct from the outset a multi-reference trial wave function with stochastically optimized non-orthogonal Gaussian orbitals. By iterative refining of the Gaussians' positions and widths, we obtain a compact multi-reference expansion for the multicomponent wave function. We extend the DMRG algorithm to multicomponent wave functions to take into account inter- and intra-species correlation effects. The efficient parameterization of the total wave function as a matrix product state allows NEAP-DMRG to accurately approximate the full configuration interaction energies of molecular systems with more than three nuclei and 12 particles in total, which is currently a major challenge for other multicomponent approaches. We present the NEAP-DMRG results for two few-body systems, i.e., H2 and H3 +, and one larger system, namely, BH3.

19.
J Chem Phys ; 152(21): 214117, 2020 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-32505150

RESUMO

MOLCAS/OpenMolcas is an ab initio electronic structure program providing a large set of computational methods from Hartree-Fock and density functional theory to various implementations of multiconfigurational theory. This article provides a comprehensive overview of the main features of the code, specifically reviewing the use of the code in previously reported chemical applications as well as more recent applications including the calculation of magnetic properties from optimized density matrix renormalization group wave functions.

20.
J Chem Phys ; 152(4): 040903, 2020 Jan 31.
Artigo em Inglês | MEDLINE | ID: mdl-32007028

RESUMO

In the past two decades, the density matrix renormalization group (DMRG) has emerged as an innovative new method in quantum chemistry relying on a theoretical framework very different from that of traditional electronic structure approaches. The development of the quantum chemical DMRG has been remarkably fast: it has already become one of the reference approaches for large-scale multiconfigurational calculations. This perspective discusses the major features of DMRG, highlighting its strengths and weaknesses also in comparison with other novel approaches. The method is presented following its historical development, starting from its original formulation up to its most recent applications. Possible routes to recover dynamical correlation are discussed in detail. Emerging new fields of applications of DMRG are explored, such as its time-dependent formulation and the application to vibrational spectroscopy.

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