Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropical Bos indicus cattle breeds.

Bos indicus cattle breeds have been naturally selected for thousands of years for disease resistance and thermo-tolerance. However, the genetic mechanisms underlying these specific inherited characteristics must be elucidated. Hence, in this study, a whole-genome comparative analysis of the Bos indicus cattle breeds Kangayam, Tharparkar, Sahiwal, Red Sindhi, and Hariana of the Indian subcontinent was conducted. Genetic variant identification analysis revealed 155 851 012 SNPs and 10 062 805 InDels in the mapped reads across all Bos indicus cattle breeds. The functional annotation of 17 252 genes that comprised both SNPs and InDels, with high functional impact on proteins, was carried out. The functional annotation results revealed the pathways involved in the innate immune response, including toll-like receptors, retinoic acid-inducible gene I-like receptors, NOD-like receptors, Jak-STAT signaling pathways, and non-synonymous variants in the candidate immune genes. We also identified several pathways involved in the heat shock response, hair and skin properties, oxidative stress response, osmotic stress response, thermal sweating, feed intake, metabolism, and non-synonymous variants in the candidate thermo-tolerant genes. These pathways and genes directly or indirectly contribute to the disease resistance and thermo-tolerance adaptations of Bos indicus cattle breeds.

Meta-analysis of mammary RNA seq datasets reveals the molecular understanding of bovine lactation biology.

A better understanding of the biology of lactation, both in terms of gene expression and the identification of candidate genes for the production of milk and its components, is made possible by recent advances in RNA seq technology. The purpose of this study was to understand the synthesis of milk components and the molecular pathways involved, as well as to identify candidate genes for milk production traits within whole mammary transcriptomic datasets. We performed a meta-analysis of publically available RNA seq transcriptome datasets of mammary tissue/milk somatic cells. In total, 11 562 genes were commonly identified from all RNA seq based mammary gland transcriptomes. Functional annotation of commonly expressed genes revealed the molecular processes that contribute to the synthesis of fats, proteins, and lactose in mammary secretory cells and the molecular pathways responsible for milk synthesis. In addition, we identified several candidate genes responsible for milk production traits and constructed a gene regulatory network for RNA seq data. In conclusion, this study provides a basic understanding of the lactation biology of cows at the gene expression level.

Modulation of post-hatch growth and immunity through in ovo supplemented nutrients in broiler chickens.

BACKGROUND: Early post-hatch growth and immunity were assessed through in ovo supplementation of nutrients: amino acids (AA), trace elements (TE), fatty acids and vitamins (FAV) grouped under humoral immunity (HI) or cell-mediated immunity (CMI) on the 18th day of incubation at the broad end of the egg using a 25 mm needle. RESULTS: Hatchability in AA groups was better than TE and FAV groups. CMI groups had better hatchability than HI groups. AA and TE groups had higher chick-to-egg weight ratio (P < 0.01) than the FAV group. At 3 weeks of age, a higher body weight (P < 0.01) was recorded in AA for CMI, TE for HI and FAV for HI groups. FAV-injected chicks had a higher bursa weight at hatch, but TE chicks had higher thymus weight at the 3rd week of age. Humoral immune response was not different in in ovo injected chicks compared to control. CMI was higher (P < 0.01) in AA for CMI, TE for CMI and FAV for CMI or HI nutrient-injected chicks. CONCLUSIONS: In ovo injection of AA for CMI and TE for HI may accelerate growth of broiler chickens. In ovo injection of AA, TE or FAV may modulate CMI in chicks.