Positive impacts of COVID-19 Lock down in Bangladesh: An online investigation.

Background: This research focuses on the positive impacts of the COVID-19 lockdown on society and the environment, despite acknowledging the widespread negative effects of the pandemic and lockdown measures. The research was aimed at pinpointing and evaluating the beneficial results stemming from these measures. Method: Data for the study was collected through an online survey distributed via Google forms to adults over the age of 18 across the country. A total of 1230 participants completed the survey, mostly from rural areas (61.7%), providing valuable insights for analysis. The questionnaire encompassed personal, family, and cohesive social data, along with information on the environment and biodiversity. The study utilized structural equation modeling (SEM) and confirmatory factor analysis (CFA) to analyze the data and examine correlations between variables. Results: The findings indicated that the COVID-19 lockdown had positive implications for individuals and society, leading to increased health consciousness, improved family relationships, and constructive social attitudes. Moreover, restrictions on access to natural tourist destinations and parks during the lockdown contributed to positive changes in biodiversity. These results highlight the importance of adopting appropriate measures during pandemics to foster personal and social well-being, as well as the preservation of natural environments and biodiversity. Conclusion: This study emphasizes the need for further research to promote sustainable living in similar situations. By understanding the data appropriately, individuals can play a constructive role in future pandemics, leading to positive outcomes for both society and the environment.

Amino acid abundance and composition in cell culture medium affects trace metal tolerance and cholesterol synthesis.

Amino acid compositions of cell culture media are empirically designed to enhance cell growth and productivity and vary both across media formulations and over the course of culture due to imbalance in supply and consumption. The interconnected nature of the amino acid transporters and metabolism suggests that changes in amino acid composition can affect cell physiology. In this study, we explore the effect of a step change in amino acid composition from a DMEM: F12-based medium to a formulation varying in relative abundances of all amino acids, evaluated at two amino acid concentrations (lean LAA vs. rich HAA). Cell growth was inhibited in LAA but not HAA. In addition to the expected effects on expression of the cell cycle, amino acid response and mTOR pathway genes in LAA, we observed an unanticipated effect on zinc uptake and efflux genes. This was accompanied by a lower tolerance to zinc supplementation in LAA but not in the other formulations. Histidine was sufficient but not necessary to prevent such zinc toxicity. Additionally, an unanticipated downregulation of genes in the cholesterol synthesis pathway was observed in HAA, accompanied by an increase in cellular cholesterol content, which may depend on the relative abundances of glutamine and other amino acids. This study shows that changes in the amino acid composition without any evident effect on growth may have profound effects on metabolism. Such analyses can help rationalize the designing of medium and feed formulations for bioprocess applications beyond replenishment of consumed components.

Impact of gut microbiome on skin health: gut-skin axis observed through the lenses of therapeutics and skin diseases.

The human intestine hosts diverse microbial communities that play a significant role in maintaining gut-skin homeostasis. When the relationship between gut microbiome and the immune system is impaired, subsequent effects can be triggered on the skin, potentially promoting the development of skin diseases. The mechanisms through which the gut microbiome affects skin health are still unclear. Enhancing our understanding on the connection between skin and gut microbiome is needed to find novel ways to treat human skin disorders. In this review, we systematically evaluate current data regarding microbial ecology of healthy skin and gut, diet, pre- and probiotics, and antibiotics, on gut microbiome and their effects on skin health. We discuss potential mechanisms of the gut-skin axis and the link between the gut and skin-associated diseases, such as psoriasis, atopic dermatitis, acne vulgaris, rosacea, alopecia areata, and hidradenitis suppurativa. This review will increase our understanding of the impacts of gut microbiome on skin conditions to aid in finding new medications for skin-associated diseases.

Floating boat method for carbonate stable isotopic ratio determination in a GasBench II peripheral.

RATIONALE: Efficient high-precision stable isotope ratio determination using the GasBench II peripheral for carbonates involves loading of a reaction vial with carbonate powder and injection of phosphoric acid of high density for carbonate digestion. Herein, we present an alternative method, which bypasses the need for acid dosing with an automated pump. The advantages of the new method include minimization of clogging within capillaries caused by the acid, acid spillage, and diffusive fractionation due to repeated piercing of the septa. METHODS: The alternative method involves the use of low-cost boats preloaded with carbonate powder introduced into an Exetainer vial preinjected with phosphoric acid and placed within the compartment of a heated block maintained at a constant temperature in the GasBench II. RESULTS: The new method yielded an improvement in precision for δ13 CVPDB and δ18 OVPDB values during replicate analyses of NBS 19, with an overall precision of ±0.04‰ and ±0.06‰, respectively. The accuracy and precision of analysis using the conventional method and the floating boat method were statistically re-evaluated using a bootstrap error analysis and Monte Carlo simulation methods. CONCLUSIONS: The proposed floating boat method of acid digestion showed significant improvement in analytical procedure and overall precision. This method is easily adoptable in other laboratories and is free from frequent issues of needle clogging and irregular fractionation due to diffusion facilitated by repeated puncturing of septa, and can serve as an alternative method for high-precision carbonate stable isotope analysis.

Ab initio quantum chemical studies of isotopic fractionation during acid digestion reaction of dolomite for clumped isotope application.

RATIONALE: In 'clumped isotope paleothermometry' carbonates are reacted with anhydrous phosphoric acid to extract CO2 that carries the isotopic signature of the reacting carbonates, and the amount of clumping in the product CO2 is measured. Previous theoretical models for determining clumped isotopic fractionation in product CO2 during acid digestion of carbonates are independent of the cations present in the carbonate lattice. Hence further study is required to understand the cationic effect. METHODS: We studied the acid reaction mechanism based on the protonation of carbonates, calculated the acid fractionation factor for dolomite using the partition functions and vibrational frequencies obtained for the transition state structure, and determined the effect of cations on the acid fractionation factor. Experimentally, carbonates are reacted using the modified sealed vessel method and analyzed in the dual inlet of a ThermoFinnigan MAT 253 isotope ratio mass spectrometer. RESULTS: The oretically obtained acid fractionation factor can be expressed as Δ47 acid fractionation in dolomite = -0.28563 + 0.49508 * (105 /T2 ) - 0.08231 * (105 /T2 )2 for a temperature range between 278.15 and 383.15 K. The theoretical slope of the dolomite-acid digestion curve is lower than that of the calcite-acid digestion curve obtained using the identical reaction mechanism. Our theoretical slope is consistent with the result from the common acid bath experiments but higher than the slope obtained in our experimental study using the modified sealed vessel method and in a previous theoretical study using the H2 CO3 model. CONCLUSIONS: The transition state structure, obtained in our study, includes the cations present in the carbonate minerals and provides distinct acid fractionation factors for calcite and dolomite. The observed gentler slope of the theoretically calculated dolomite-acid digestion curve than of the calcite curve is expected considering the stronger Mg-O bond. Our experimental approach invokes post-digestion isotopic exchange and agrees with the previous theoretical estimates where post-digestion isotopic fractionation was considered.

Fractionation of stable oxygen and clumped isotopes during acid digestion of calcite in the presence of an external direct current electric field.

RATIONALE: Phosphoric acid digestion of carbonate generates CO2 for stable oxygen and clumped isotope analysis using a gas source isotope ratio mass spectrometer. The initial step of the digestion reaction is protonation of calcite while the product CO2 equilibrates with the system allowing further exchange of isotopes to various extents depending on the nature of the acid digestion methods. An external electric field is introduced in the break seal method to demonstrate the role of the protonation reaction and the post-digestion isotopic exchanges in the final isotopic composition of product CO2 . METHODS: An acid digestion experiment following the break seal method was conducted at a constant temperature of 25 ± 0.5°C in the presence of a uniform external electric field of 0.5 kV/cm within a specially fabricated corona chamber. Replicate samples of a calcite powder of a reference standard (MAR J1) were reacted for 24 h in the presence and absence of an external electric field for varying exposure times (6 to 24 h) and the evolved CO2 was analyzed using a dual-inlet MAT 253 isotope ratio mass spectrometer. RESULTS: The CO2 yield from the phosphoric acid digestion of MAR J1 calcite was 20% lower during the reaction in presence of an electric field for an exposure time of 24 h, while the corresponding δ18 O value and Δ47 composition were 0.3‰ and 0.1‰ less, respectively, than without any electric field. CONCLUSIONS: We documented the systematic control of oxygen and clumped isotope ratios in CO2 evolved from the carbonate acid digestion reaction with varying exposure time to the external electric field. We provide a new method involving use of an external electric field to manipulate the isotopic fractionation during the acid digestion reaction of calcite. The experimental observation enabled theoretical understanding of the reaction mechanism of carbonate with phosphoric acid which will be useful for stable and clumped isotope studies.

Structural insights of a cellobiose dehydrogenase enzyme from the basidiomycetes fungus Termitomyces clypeatus.

Filamentous fungi secrete various oxidative enzymes to degrade the glycosidic bonds of polysaccharides. Cellobiose dehydrogenase (CDH) (E.C.1.1.99.18) is one of the important lignocellulose degrading enzymes produced by various filamentous fungi. It contains two stereo specific ligand binding domains, cytochrome and dehydrogenase - one for heme and the other for flavin adenine dinucleotide (FAD) respectively. The enzyme is of commercial importance for its use in amperometric biosensor, biofuel production, lactose determination in food, bioremediation etc. Termitomyces clypeatus, an edible fungus belonging to the basidiomycetes group, is a good producer of CDH. In this paper we have analyzed the structural properties of this enzyme from T. clypeatus and identified a distinct carbohydrate binding module (CBM) which is not present in most fungi belonging to the basidiomycetes group. In addition, the dehydrogenase domain of T. clypeatus CDH exhibited the absence of cellulose binding residues which is in contrast to the dehydrogenase domains of CDH of other basidiomycetes. Sequence analysis of cytochrome domain showed that the important residues of this domain were conserved like in other fungal CDHs. Phylogenetic tree, constructed using basidiomycetes and ascomycetes CDH sequences, has shown that very surprisingly the CDH from T. clypeatus, which is classified as a basidiomycetes fungus, is clustered with the ascomycetes group. A homology model of this protein has been constructed using the CDH enzyme of ascomycetes fungus Myricoccum thermophilum as a template since it has been found to be the best match sequence with T. clypeatus CDH. We also have modelled the protein with its substrate, cellobiose, which has helped us to identify the substrate interacting residues (L354, P606, T629, R631, Y649, N732, H733 and N781) localized within its dehydrogenase domain. Our computational investigation revealed for the first time the presence of all three domains - cytochrome, dehydrogenase and CBM - in the CDH of T. clypeatus, a basidiomycetes fungus. In addition to discovering the unique structural attributes of this enzyme from T. clypeatus, our study also discusses the possible phylogenetic status of this fungus.