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Nucleic Acids Res ; 40(15): 7416-29, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-22581777

RESUMO

Cellular oxidative and electrophilic stress triggers a protective response in mammals regulated by NRF2 (nuclear factor (erythroid-derived) 2-like; NFE2L2) binding to deoxyribonucleic acid-regulatory sequences near stress-responsive genes. Studies using Nrf2-deficient mice suggest that hundreds of genes may be regulated by NRF2. To identify human NRF2-regulated genes, we conducted chromatin immunoprecipitation (ChIP)-sequencing experiments in lymphoid cells treated with the dietary isothiocyanate, sulforaphane (SFN) and carried out follow-up biological experiments on candidates. We found 242 high confidence, NRF2-bound genomic regions and 96% of these regions contained NRF2-regulatory sequence motifs. The majority of binding sites were near potential novel members of the NRF2 pathway. Validation of selected candidate genes using parallel ChIP techniques and in NRF2-silenced cell lines indicated that the expression of about two-thirds of the candidates are likely to be directly NRF2-dependent including retinoid X receptor alpha (RXRA). NRF2 regulation of RXRA has implications for response to retinoid treatments and adipogenesis. In mouse, 3T3-L1 cells' SFN treatment affected Rxra expression early in adipogenesis, and knockdown of Nrf2-delayed Rxra expression, both leading to impaired adipogenesis.


Assuntos
Regulação da Expressão Gênica , Fator 2 Relacionado a NF-E2/metabolismo , Receptor X Retinoide alfa/metabolismo , Células 3T3-L1 , Adipócitos/citologia , Adipócitos/metabolismo , Adipogenia , Animais , Sítios de Ligação , Linhagem Celular , Células Cultivadas , Imunoprecipitação da Cromatina , Genoma Humano , Humanos , Isotiocianatos , Linfócitos/efeitos dos fármacos , Linfócitos/metabolismo , Camundongos , MicroRNAs/metabolismo , Fator de Transcrição NF-E2/metabolismo , Motivos de Nucleotídeos , Regiões Promotoras Genéticas , Elementos de Resposta , Análise de Sequência de DNA , Sulfóxidos , Tiocianatos/farmacologia
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