Realization of either physisorption or chemisorption of 2H-tetraphenylporphyrin on the Cu(111) from density functional theory.

The adsorption of organic molecules to surfaces is a central issue to achieve fully-functional molecular devices, for which porphyrins are well-studied due to their chemical stability and functional diversity. Herein, we investigate both the physical and the chemical adsorption of the free-base tetraphenylporphyrin 2H-TPP on the Cu(111) surface within the framework of density functional theory and find that the most stable physisorbed configuration is more weakly bound by -0.31 eV than the chemisorbed configuration. We use the electron localization function to investigate the difference in binding mechanisms between strong physisorption and weak chemisorption. We have computed a reaction barrier of 0.12 eV in going from physical binding to chemical bonding to the surface, and a barrier of 50 meV in going between neighboring physical binding sites. Our results support the possibility of realizing free-base porphyrins either physisorbed or chemisorbed on Cu(111) depending on the deposition procedure and experimental conditions.

Prospects for Engineering Thermoelectric Properties in La1/3NbO3 Ceramics Revealed via Atomic-Level Characterization and Modeling.

A combination of experimental and computational techniques has been employed to explore the crystal structure and thermoelectric properties of A-site-deficient perovskite La1/3NbO3 ceramics. Crystallographic data from X-ray and electron diffraction confirmed that the room temperature structure is orthorhombic with Cmmm as a space group. Atomically resolved imaging and analysis showed that there are two distinct A sites: one is occupied with La and vacancies, and the second site is fully unoccupied. The diffuse superstructure reflections observed through diffraction techniques are shown to originate from La vacancy ordering. La1/3NbO3 ceramics sintered in air showed promising high-temperature thermoelectric properties with a high Seebeck coefficient of S1 = -650 to -700 µV/K and a low and temperature-stable thermal conductivity of k = 2-2.2 W/m·K in the temperature range of 300-1000 K. First-principles electronic structure calculations are used to link the temperature dependence of the Seebeck coefficient measured experimentally to the evolution of the density of states with temperature and indicate possible avenues for further optimization through electron doping and control of the A-site occupancies. Moreover, lattice thermal conductivity calculations give insights into the dependence of the thermal conductivity on specific crystallographic directions of the material, which could be exploited via nanostructuring to create high-efficiency compound thermoelectrics.

Descriptors for predicting the lattice constant of body centered cubic crystal.

The prediction of the lattice constant of binary body centered cubic crystals is performed in terms of first principle calculations and machine learning. In particular, 1541 binary body centered cubic crystals are calculated using density functional theory. Results from first principle calculations, corresponding information from periodic table, and mathematically tailored data are stored as a dataset. Data mining reveals seven descriptors which are key to determining the lattice constant where the contribution of descriptors is also discussed and visualized. Support vector regression (SVR) technique is implemented to train the data where the predicted lattice constants have the mean score of 83.6% accuracy via cross-validation and maximum error of 4% when compared to experimentally determined lattice constants. In addition, trained SVR is successful in predicting material combinations from a desired lattice constant. Thus, a set of descriptors for determining the lattice constant is identified and can be used as a base descriptor for lattice constants of further complex crystals. This would allow for the acceleration of the search for lattice constants of desired atomic compositions as well as the prediction of new materials based on a specified lattice constant.

Mechanism for limiting thickness of thin oxide films on aluminum.

A first-principles account of the observed limiting thickness of oxide films formed on aluminum during oxidizing conditions is presented. The results uncover enhanced bonding of oxygen to thin alumina films in contact with metallic aluminum that stems from charge transfer between a reconstructed oxide-metal interface and the adsorbed molecules. The first-principles results are compared with the traditional Cabrera-Mott (CM) model, which is a classical continuum model. Within the CM model, charged surface oxygen species and metal ions generate a (Mott) potential that drives oxidation. An apparent limiting thickness is observed as the oxidation rate decreases rapidly with film growth. The present results support experimental estimates of the Mott potential and film thicknesses. In contrast to the CM model, however, the calculations reveal a real limiting thickness that originates from a diminishing oxygen adsorption energy beyond a certain oxide film thickness.

Analysis of porphyrines as catalysts for electrochemical reduction of O2 and oxidation of H2O.

Bioinspired structures are promising as improved catalysts for various redox reactions. One example is metal hangman-porphyrines (MHP), which recently have been suggested for oxygen reduction/evolution reaction (ORR/OER). The unique properties of the MHPs are attributed to both the hangman scaffold and the C6F5 side groups. Herein, the OER/ORR over various transition metal MHPs is investigated by density functional theory calculations within an electrochemical framework. A comparison of the reaction landscape for MHP, metal porphyrine (MP) and metaltetrafluorophenyloporphyrines (MTFPP), allow for a disentanglement of the different roles of the hangman motif and the side groups. In agreement with experimental studies, it is found that Fe and Co are the best MHP metal centers to catalyze these reactions. We find that the addition of the three-dimensional moiety in the form of hangman scaffold does not break the apparently universal energy relation between *OH and *OOH intermediates. However, the hangman motif is found to stabilize the oxygen intermediate, whereas addition of C6F5 groups reduces the binding energy of all reaction intermediates. Our results indicate that the combination of these two effects allow new design possibilities for macromolecular systems with enhanced catalytic OER/ORR activity.

Inversion of the shuttlecock shaped metal phthalocyanines MPc (M = Ge, Sn, Pb)--a density functional study.

Shuttlecock shaped metal-phthalocyanine (MPc) can adsorb on a substrate surface having the central metal atom either down or up and the possibility of reversible switching between these two adsorption configurations shows great promise for use in nanomechanical devices. Using density functional theory we investigate the mechanism of the internal conformational inversion of germanium, tin and lead phthalocyanine in terms of the geometry, energy barrier of the reaction, and redox properties of the central metal atom. We have found the same mechanism of inversion for GePc and SnPc but a different one for PbPc. Inversion proceeds through two transition states, separated by a planar local minimum, for GePc and SnPc, but through one transition state distorting the phthalocyanine macrocycle for PbPc. The energy barrier of inversion is 4.27 eV for PbPc and 2.12 and 3.16 eV for GePc and SnPc, respectively. Such high barriers are unlikely to be overcome at normal experimental conditions, and in many cases alternative explanations for switching between "up" and "down" conformation need to be sought, such as ionization assisted inversion or even flipping over of the molecules. Our calculations show that the inversion of GePc and SnPc is accompanied by reversible two electron oxidation (M(II)<--> M(IV)) of the metal atom, through intersystem crossing. The difference in mechanism of inversion for GePc (SnPc) and PbPc is assigned to the different nature of the central metal atom.