Ensifer, Phyllobacterium and Rhizobium species occupy nodules of Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a Canadian site without a history of cultivation.

Phage-resistant and -susceptible bacteria from nodules of alfalfa and sweet clover, grown at a site without a known history of cultivation, were identified as diverse genotypes of Ensifer, Rhizobium and Phyllobacterium species based on sequence analysis of ribosomal (16S and 23S rRNA) and protein-encoding (atpD and recA) genes, Southern hybridization/RFLP and a range of phenotypic characteristics. Among phage-resistant bacteria, one genotype of Rhizobium sp. predominated on alfalfa (frequency approximately 68 %) but was recovered infrequently ( approximately 1 %) from sweet clover. A second genotype was isolated infrequently only from alfalfa. These genotypes fixed nitrogen poorly in association with sweet clover and Phaseolus vulgaris, but were moderately effective with alfalfa. They produced a near-neutral reaction on mineral salts agar containing mannitol, which is atypical of the genus Rhizobium. A single isolate of Ensifer sp. and two of Phyllobacterium sp. were recovered only from sweet clover. All were highly resistant to multiple antibiotics. Phylogenetic analysis indicated that Ensifer sp. strain T173 is closely related to, but separate from, the non-symbiotic species 'Sinorhizobium morelense'. Strain T173 is unique in that it possesses a 175 kb symbiotic plasmid and elicits ineffective nodules on alfalfa, sweet clover, Medicago lupulina and Macroptilium atropurpureum. The two Phyllobacterium spp. were non-symbiotic and probably represent bacterial opportunists. Three genotypes of E. meliloti that were symbiotically effective with alfalfa and sweet clover were encountered infrequently. Among phage-susceptible isolates, two genotypes of E. medicae were encountered infrequently and were highly effective with alfalfa, sweet clover and Medicago polymorpha. The ecological and practical implications of the findings are discussed.

Identification and cloning of the bacterial nodulation specificity gene in the Sinorhizobium meliloti--Medicago laciniata symbiosis.

Medicago laciniata (cut-leaf medic) is an annual medic that is highly nodulation specific, nodulating only with a restricted range of Sinorhizobium meliloti. e.g., strain 102L4, but not with most strains that nodulate Medicago sativa (alfalfa), e.g., strains RCR2011 and Rm41. Our aim was to identify and clone the S. meliloti 102L4 gene implicated in the specific nodulation of M. laciniata and to characterize the adjacent nodulation (nod) region. An 11-kb EcoRI DNA fragment from S. meliloti 102L4 was shown to complement strain RCR2011 for nodulation of M. laciniata. Nucleotide sequencing revealed that this fragment contained nodABCIJ genes whose overall arrangement was similar to those found in strains RCR2011 and Rm41, which do not nodulate M. laciniata. Data for Tn5 mutagenesis of the nodABCIJ region of strain 102L4 suggested that the nodC gene was involved in the specific nodulation of M. laciniata. Tn5 insertions in the nodIJ genes gave mutants with nodulation delay phenotypes on both M. laciniata and M. sativa. Only subclones of the 11-kb DNA fragment containing a functional nodC gene from strain 102L4 were able to complement strain RCR2011 for nodulation of M. laciniata. The practical implications of these findings are discussed in the context of the development of a specific M. sativa - S. meliloti combination that excludes competition for nodulation by bacterial competitors resident in soil.

Temporal effects on the composition of a population of Sinorhizobium meliloti associated with Medicago sativa and Melilotus alba.

An assessment was made of the impact of temporal separation on the composition of a population of Sinorhizobium meliloti associated with Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a single site that had no known history of alfalfa cultivation. Root nodules were sampled on six occasions over two seasons, and a total of 1620 isolates of S. meliloti were characterized on the basis of phage sensitivity using 16 typing phages. Plant infection tests indicated that symbiotic S. meliloti were deficient in the soil at the time of planting and that these bacteria were present at low density during the first season (<10(2)/g of soil); in the second season numbers increased markedly to about 10(5)/g of soil. Overall, 37 and 51 phage types, respectively, were encountered among the nodule isolates from M. sativa and M. alba. The data indicate significant temporal shifts in the frequency and diversity of types associated with the two legume species. Apparent temporal variation with respect to the frequency of types appeared largely unpredictable and was not attributable to any one sampling time. The results indicate an apparent reduction in phenotypic diversity over the course of the experiment. Differential host plant selection of specific types with respect to nodule occupancy was indicated by significant interactions between legume species and either the frequency or diversity of phage types. Isolates from M. sativa that were resistant to lysis by all typing phages (type 14) were unusual in that they were predominant on this host at all sampling times (between 53% and 82% nodule occupancy) and were relatively homogeneous on the basis of DNA hybridization with 98% of the isolates analysed sharing the same nod EFG hybridization profile. In contrast, those isolates from M. alba comprising type 14 were encountered at low total frequency (2%) and were genetically heterogeneous on the basis of Southern hybridization. The implications of the observed temporal and host plant variation for ecological studies are discussed.

Sinorhizobium meliloti plasmid pRm1132f replicates by a rolling-circle mechanism.

pRm1132f isolated from Sinorhizobium meliloti is a group III rolling-circle-replicating (RCR) plasmid. At least seven of eight open reading frames in the nucleotide sequence represented coding regions. The minimal replicon contained a rep gene and single- and double-stranded origins of replication. Detection of single-stranded plasmid DNA confirmed that pRm1132f replicated via an RCR mechanism.

Construction and properties of cloning vectors based on a 7.2-kb Rhizobium meliloti cryptic plasmid.

Cloning vectors (pFD1001, pFD1192, pFD1194, and pFD1212) were constructed by extension of the host range of a 7.2-kb Rhizobium meliloti cryptic plasmid (pRM1132f) with the ColE1-based plasmids, pBR322, pACYC177, pACYC 184, pSUP301, or pHC179; mobilization was facilitated by introduction of the oriT region from pRK2, a broad-host-range plasmid. The vector plasmids transferred readily into a wide range of gram-negative bacteria and had relatively low copy number in R. meliloti; two constructs, pFD1001 and pFD1212, were completely stable in R. meliloti isolated from nodules of alfalfa (Medicago sativa). A representative of the vector constructs (pFD1001) could be maintained in R. meliloti in the presence of the broad-host-range shuttle plasmid pRK290. These two vector plasmids could be introduced into R. meliloti, either simultaneously or singly when pRK290 was the resident plasmid; however, entry of pRK290 was blocked when pFD1001 was the resident plasmid. The cloning vectors constructed in this study should prove to be useful for the genetic manipulation of Rhizobium.

Genetic analysis of a region of the Rhizobium meliloti pSym plasmid specifying catabolism of trigonelline, a secondary metabolite present in legumes.

Genes controlling the catabolism of trigonelline, a secondary metabolite that is often present in legumes, are located on the pSym megaplasmid of Rhizobium meliloti. To investigate the role of bacterial trigonelline catabolism in the Rhizobium-legume symbiosis, we identified and characterized the R. meliloti RCR2011 genetic loci (trc) controlling trigonelline catabolism. Tn5-B20 mutagenesis showed that the trc region is a continuous DNA segment of 9 kb located 4 kb downstream of the nifAB and fdxN genes. Trc mutants fell into two classes according to their phenotype and location: (i) mutants carrying Tn5-B20 insertions in the right-hand part of the trc region were incapable of growing on trigonelline as the sole carbon and/or nitrogen source, and (ii) insertions in the left-hand part of the trc region resulted in delayed growth on trigonelline as the sole carbon and/or nitrogen source. No significant defect in nodule formation or nitrogen fixation was detected for mutants of either class. Screening of a set of R. meliloti strains from various geographical origins showed that all of these strains are able to catabolize trigonelline and show sequence homology between their megaplasmids and a trc probe.

Cryptic plasmid and rifampin resistance in Rhizobium meliloti influencing nodulation competitiveness.

An assessment was made of the relative contributions of a spontaneous mutation to rifampin resistance and a cryptic plasmid, pTA2, to competitive nodulation of Medicago sativa by a strain of Rhizobium meliloti. This was facilitated by use of rifampin-resistant derivatives of this strain in which pTA2 was originally present, cured, or reintroduced. Both curing of pTA2 and spontaneous mutation to rifampin resistance significantly influenced nodulating competitiveness, but the effect of rifampin resistance was greater and such that the contribution of pTA2 was evident only in cases in which paired competitors had the common rifampin resistance background. The data suggest that rifampin-resistant derivatives contain an altered RNA polymerase insensitive to the action of rifampin. All R. meliloti derivatives had symbiotic characteristics and phage susceptibility patterns similar to those of the wild type. Plasmid pTA2 transfer or other genetic interchange was not detected in nodules of M. sativa inoculated with paired competitors.

Leucine transport in cells isolated from cold-hardened and nonhardened winter rye.

The properties of the leucine transport systems of cells isolated from dark-grown cold-hardened and nonhardened winter rye (Secale cereale L. cv. Puma) epicotyls were remarkably similar. After 1 hour of incubation, leucine was accumulated in the cells 80- to 100-fold above that of the external medium, but the transported leucine was not metabolized. Approximately one-third of the accumulated leucine was present in the vacuole after 40 minutes of incubation. At 25 degrees C, efflux of leucine from the vacuole was 6 to 10 times slower than it was from the cytoplasm, while at 5 degrees C efflux from the cells was inhibited.The apparent K(m) and V(max) for leucine uptake for both types of cells were of the order of 20 to 60 micromolar and 0.5 to 1.3 nanomoles per minute per 10(6) cells. The pH and temperature optima for both types of cells were 5 and 25 degrees C, respectively. The leucine transport system for these cells was relatively specific for amino acids lacking either bulky or charged groups on the amino acid side chains.Arrhenius plots for leucine uptake by hardened and nonhardened cells showed discontinuities at 13 degrees C, and the energies of activation were similar. The results suggests that biochemical changes which occur in rye cells upon cold hardening did not result in an observable perturbation of the properties of the leucine transport system.

Methionine transport by mycelia of Fusarium oxysporum f. sp. lycopersici.

Mycelia of Fusarium oxysporum f. sp. lycopersici accumulated L-methionine by an energy-dependent process, and the energy required for uptake may be derived from either respiration or glycolysis. The pH optimum for transport was 4 and the temperature optimum was 35 degrees C. The apparent Km for methionine uptake was 2.5-3.3 microM and the Vmax 0.24-0.30 mmol . min-1 . mg dry weight-1. S-adenosylhomocysteine (Ado-Hcys) was the major metabolic product of methionine although S-adenosylmethionine (Ado-Met), homocysteine (Hcys), and an unidentified metabolite (compound X) were also detected. The failure to demonstrate efflux of accumulated methionine in the presence of the uncoupler 2,4-dinitrophenol or excess unlabeled methionine was probably due to the fact that methionine was rapidly metabolized within the cells. Acidic and basic amino acids, and those amino acids having less than a four-carbon chain, did not inhibit methionine uptake. The rate of uptake of methionine, which was greatest in log phase mycelia, decreased substantially as the cells entered the stationary phase.

Effect of thiols on macroconidia of Fusarium sulphureum.

Treatment of Fusarium sulphureum macroconidial cells with five thiols alters their morphology. Macroconidial cells incubated in dithiothreitol (DTT), dithioerythritol (DTE), or thiourea differentiate into thick-walled, chlamydospore-like cells (thiol-induced spores). These cells appear similar in size and shape to chlamydospores in the light microscope, but differ markedly in cell wall structure when viewed in the electron microscope (EM). Incubation of macroconidia with both DTT and DTE also leads to the formation of large swollen cells (giant cells) which have a parietal cytoplasm and electron-tranparent cell walls; most of these giant cells lyse within 3 to 7 days of incubation. Thiourea-induced spores are characterized by the deposition of a thick, electron-dense, extracellular layer and an accumulation of mitochondria. DTT and DTE, at the concentrations used, inhibit macroconidial germination while thiourea, mercaptoethanol, and cysteine do not. With the latter three thiols, the newly formed hyphal cells become elongated with either one or both ends swollen. Mercaptoethanol-treated cells contain an abundance of mitochondria. The DTT-induced spore differs from both macroconidia and chlamydospores with respect to cellular lipid and cell wall composition. While the thiols have different effects on the macroconidia, the fact that they all induce cell expansion suggests that they react at some common sites.

The effect of ionic surface-active agents on macroconidial plasma membrane of Fusarium sulphureum.

A method was developed for direct assessment of changes in cytoplasmic volume and permeability of plasma membranes of intact cells to divalent cations. This technique, which ultilized an amphipathic spin label partitioning between intracellular aqueous and hydrophobic environments, allowed estimates of the proportion of cells in a homogenous population sustaining membrane damage associated with Ni+2 and water permeability and the rate at which such damage was induced. Several specific effects of cationic and anionic surfactants on the macroconidial plasma membranes of Fusarium sulphureum Schlect (isolate 1) were distinguished on the basis of detergent concentration and charge. The induction of water uptake by the cells was found to be an effect of dodecylguanidine acetate (Dodine), a cationic fungicide, at low concentration. At higher concentrations (greater than 5 X 10(-5) M) both the impermeability of the plasma membrane to divalent cations and the ability to accumulate actively L-phenylalanine were lost irreversibly and cell lysis occurred above 5 X 10(-4) M. Sodium dodecyl sulfate eliminated divalent cation impermeability more rapidly than Dodine but was less effective in inhibiting active transport function. An antagonistic effect between cationic and anionic detergents was observed.

Requirements for the rapid conversion of macroconidia of Fusarium sulphureum to chlamydospores.

Chlamydospores of Fusarium sulphureum were formed within 72 h by incubating macroconidia at 37 degrees C in stationary culture in a medium containing mannitol and inorganic salts. The conversion process was dependent on inoculum level, temperature, aeration, and the presence of an external source of nitrogen and carbon. Chlamydospore formation was not inhibited by an uncoupler of oxidative phosphorylation, 2,4-dinitrophenol, or by inhibitors of bacterial cell wall synthesis; however, it was affected by inhibitors of respiration and of protein and chitin synthesis.

Transport of phenylalanine by conidia of Fusarium sulphureum.

L-Phenylalanine was actively transported by conidia of Fusarium sulphurenum Schlect (isolate 1). Uptake was optimal at pH 7, 30 degrees C; respiration-dependent; and was unaffected by relatively high internal concentrations of phenylalanine. The Km for transport was 1-3 X 10(-5) M and the Vmax was 2.5-4 nmol/min per milligram dry weight. Phenylalanine is transported by a general transport system for basic and neutral amino acids. Sucrose repressed uptake of phenylalanine and this repression was largely negated by cycloheximide. Efflux of accumulated phenylalanine was influx-dependent; this transport system deteriorated slowly with aging of the conidial culture.

Temperature-induced alterations in phospholipids of Fusarium oxysporum f. sp. lycopersici.

Ten phospholipids were identified in hyphal membrane preparations of Fusarium oxysporum f. sp. lycopersici when the cells were grown to the late log phase at 15, 25, and 37 degrees C, respectively. The major phospholipids present were phosphatidylcholine (PC) and phosphatidylethanolamine (PE), which together made up about 70% of the total membrane phospholipids. The degree of unsaturation in the acyl group of the phospholipids was inversely related to growth temperature. The polar head group composition was also affected by growth temperature. Cells grown at 15 and 25 degrees C contained the same relative proportions of PC and PE, but when the growth temperature was raised to 37 degrees C, the ratio of PC to PE was doubled. A methylating system capable of converting PE to PC was demonstrated in vitro.

Cell wall of Fusarium sulphureum; I. Chemical composition of the hyphal wall.

The hyphae wall of Fusarium sulphureum Schlect. (Isolate 1) was isolated and purified. Electron microscopy studies showed that the isolated cell wall consisted of two distinct layers, an outer electron dense layer and a broader electron transparent inner layer. Chemical analysis revealed that the cell wall contained 66% carbohydrate, 7.3% protein, 5.5% lipid and 1.8% ash. The major cell wall component N-acetylglucosamine (39%) was shown by X-ray diffraction analysis to be present as chitin. Glucose constituted 14% of the cell wall, while mannose, galactose, and glucuronic acid, accounted for 15% of the cell wall. Glucuronic acid appears to be predominantly linked to galactose in the intact wall.